HEADER TRANSFERASE 14-MAR-18 6FZB TITLE AADA IN COMPLEX WITH ATP, MAGNESIUM AND STREPTOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTOMYCIN 3''-ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.47; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM STR. LT2; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 ATCC: 700720; SOURCE 6 GENE: AADA, STM1264; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AMINOGLYCOSIDE ADENYL TRANSFERASE, ANT(3'')9, ANTIBIOTIC RESISTANCE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KANCHUGAL P,M.SELMER REVDAT 5 17-JAN-24 6FZB 1 LINK REVDAT 4 21-AUG-19 6FZB 1 REMARK REVDAT 3 01-AUG-18 6FZB 1 JRNL REVDAT 2 20-JUN-18 6FZB 1 JRNL REVDAT 1 13-JUN-18 6FZB 0 JRNL AUTH A.L.STERN,S.E.VAN DER VERREN,S.KANCHUGAL P,J.NASVALL, JRNL AUTH 2 H.GUTIERREZ-DE-TERAN,M.SELMER JRNL TITL STRUCTURAL MECHANISM OF AADA, A DUAL-SPECIFICITY JRNL TITL 2 AMINOGLYCOSIDE ADENYLYLTRANSFERASE FROMSALMONELLA ENTERICA. JRNL REF J. BIOL. CHEM. V. 293 11481 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29871922 JRNL DOI 10.1074/JBC.RA118.003989 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.CHEN,J.NASVALL,S.WU,D.I.ANDERSSON,M.SELMER REMARK 1 TITL STRUCTURE OF AADA FROM SALMONELLA ENTERICA: A MONOMERIC REMARK 1 TITL 2 AMINOGLYCOSIDE (3'')(9) ADENYLTRANSFERASE. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 71 2267 2015 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 26527143 REMARK 1 DOI 10.1107/S1399004715016429 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3434 - 4.9387 1.00 2601 136 0.1478 0.1731 REMARK 3 2 4.9387 - 3.9210 1.00 2597 135 0.1317 0.1681 REMARK 3 3 3.9210 - 3.4256 1.00 2570 139 0.1610 0.1863 REMARK 3 4 3.4256 - 3.1125 1.00 2611 136 0.1873 0.2408 REMARK 3 5 3.1125 - 2.8895 1.00 2623 137 0.1948 0.2115 REMARK 3 6 2.8895 - 2.7192 1.00 2602 137 0.1919 0.2392 REMARK 3 7 2.7192 - 2.5830 1.00 2561 136 0.1906 0.2184 REMARK 3 8 2.5830 - 2.4706 1.00 2645 140 0.1870 0.2191 REMARK 3 9 2.4706 - 2.3755 1.00 2554 135 0.2066 0.2554 REMARK 3 10 2.3755 - 2.2935 1.00 2616 136 0.2113 0.2471 REMARK 3 11 2.2935 - 2.2218 1.00 2561 138 0.2262 0.2297 REMARK 3 12 2.2218 - 2.1583 1.00 2636 135 0.2436 0.2628 REMARK 3 13 2.1583 - 2.1015 1.00 2570 140 0.2678 0.3071 REMARK 3 14 2.1015 - 2.0502 1.00 2589 129 0.2758 0.3325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4456 REMARK 3 ANGLE : 0.660 6114 REMARK 3 CHIRALITY : 0.037 716 REMARK 3 PLANARITY : 0.003 757 REMARK 3 DIHEDRAL : 12.962 2686 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2316 78.9240 77.8394 REMARK 3 T TENSOR REMARK 3 T11: 0.3913 T22: 0.3408 REMARK 3 T33: 0.4493 T12: 0.0260 REMARK 3 T13: 0.0503 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 3.4910 L22: 2.3350 REMARK 3 L33: 1.5745 L12: -2.1919 REMARK 3 L13: -0.6118 L23: -0.3480 REMARK 3 S TENSOR REMARK 3 S11: -0.1781 S12: 0.0229 S13: -0.7012 REMARK 3 S21: -0.0296 S22: 0.0016 S23: 0.5934 REMARK 3 S31: 0.3084 S32: -0.1442 S33: 0.1751 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8329 75.7665 74.4784 REMARK 3 T TENSOR REMARK 3 T11: 0.4498 T22: 0.3320 REMARK 3 T33: 0.4559 T12: 0.0503 REMARK 3 T13: 0.0741 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 3.2235 L22: 2.7093 REMARK 3 L33: 1.2163 L12: -1.5211 REMARK 3 L13: 0.2581 L23: -0.4238 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: 0.0363 S13: -0.3246 REMARK 3 S21: 0.0393 S22: -0.0945 S23: 0.3274 REMARK 3 S31: 0.2131 S32: -0.1572 S33: 0.1321 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3903 77.6148 60.6186 REMARK 3 T TENSOR REMARK 3 T11: 0.4326 T22: 0.3955 REMARK 3 T33: 0.5178 T12: -0.0411 REMARK 3 T13: 0.0545 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.0671 L22: 3.9189 REMARK 3 L33: 5.9643 L12: -0.1948 REMARK 3 L13: 0.3222 L23: -1.8056 REMARK 3 S TENSOR REMARK 3 S11: -0.2386 S12: 0.1975 S13: -0.1709 REMARK 3 S21: -0.4301 S22: 0.0904 S23: 0.5905 REMARK 3 S31: 0.2876 S32: -0.2289 S33: 0.1592 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8115 90.1322 63.3450 REMARK 3 T TENSOR REMARK 3 T11: 0.3184 T22: 0.2770 REMARK 3 T33: 0.2814 T12: 0.0033 REMARK 3 T13: 0.0106 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 3.4754 L22: 3.8725 REMARK 3 L33: 4.2959 L12: -1.0364 REMARK 3 L13: -1.6702 L23: 0.4777 REMARK 3 S TENSOR REMARK 3 S11: 0.0955 S12: 0.0479 S13: 0.1082 REMARK 3 S21: 0.0022 S22: -0.0120 S23: 0.0964 REMARK 3 S31: -0.3203 S32: -0.0935 S33: -0.0853 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.8222 93.3717 84.5150 REMARK 3 T TENSOR REMARK 3 T11: 0.2774 T22: 0.4013 REMARK 3 T33: 0.3424 T12: 0.0229 REMARK 3 T13: 0.0170 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 5.6108 L22: 5.6066 REMARK 3 L33: 2.6380 L12: 0.5992 REMARK 3 L13: -0.8683 L23: 0.5406 REMARK 3 S TENSOR REMARK 3 S11: -0.0667 S12: 0.3025 S13: -0.6183 REMARK 3 S21: -0.0952 S22: -0.1533 S23: 0.1906 REMARK 3 S31: 0.2373 S32: -0.1127 S33: 0.1827 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.5118 92.7214 91.7675 REMARK 3 T TENSOR REMARK 3 T11: 0.3580 T22: 0.4701 REMARK 3 T33: 0.4506 T12: -0.0178 REMARK 3 T13: 0.0661 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 4.7746 L22: 1.7318 REMARK 3 L33: 0.9240 L12: -1.4346 REMARK 3 L13: 0.1459 L23: 0.2742 REMARK 3 S TENSOR REMARK 3 S11: -0.1512 S12: -0.1191 S13: -0.6396 REMARK 3 S21: 0.0722 S22: -0.0349 S23: 0.3079 REMARK 3 S31: 0.2621 S32: -0.1974 S33: 0.1819 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 159 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.1110 105.7518 105.2493 REMARK 3 T TENSOR REMARK 3 T11: 0.4041 T22: 0.4179 REMARK 3 T33: 0.4885 T12: -0.0498 REMARK 3 T13: 0.0439 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 4.1124 L22: 3.7145 REMARK 3 L33: 7.2109 L12: 1.2439 REMARK 3 L13: 2.1595 L23: 0.4164 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: -0.6248 S13: -0.5792 REMARK 3 S21: 0.4063 S22: -0.3673 S23: -0.2632 REMARK 3 S31: 0.3569 S32: -0.4862 S33: 0.3093 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.0007 115.0749 102.5304 REMARK 3 T TENSOR REMARK 3 T11: 0.2568 T22: 0.2902 REMARK 3 T33: 0.2788 T12: -0.0133 REMARK 3 T13: 0.0117 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 4.4095 L22: 3.0761 REMARK 3 L33: 3.9908 L12: -0.6401 REMARK 3 L13: -1.0743 L23: 1.4628 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: -0.0466 S13: -0.0026 REMARK 3 S21: -0.0158 S22: 0.0479 S23: -0.1795 REMARK 3 S31: -0.0104 S32: 0.2366 S33: -0.0822 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07438 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38252 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 71.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5G4A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% V/V PEG 500* MME; 10 % W/V PEG REMARK 280 20000, 0.02M DL-GLUTAMIC ACID MONOHYDRATE; 0.02M DLALANINE; REMARK 280 0.02M GLYCINE; 0.02M DL-LYSINE MONOHYDROCHLORIDE; 0.02M DL- REMARK 280 SERINE, 0.1M SODIUM HEPES-MOPS PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.24000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.62000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 265 REMARK 465 GLY A 266 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 MET B 1 REMARK 465 LYS B 265 REMARK 465 GLY B 266 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 268 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 267 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 174 -39.65 -132.35 REMARK 500 GLN B 174 -48.34 -136.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 ASP A 49 OD2 95.8 REMARK 620 3 ATP A 304 O2A 107.5 88.2 REMARK 620 4 ATP A 304 O2B 172.4 88.7 78.6 REMARK 620 5 ATP A 304 O2G 93.5 170.2 92.1 81.8 REMARK 620 6 HOH A 407 O 82.3 88.1 169.8 91.7 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD2 REMARK 620 2 ASP A 49 OD1 94.3 REMARK 620 3 GLU A 87 OE1 90.8 93.7 REMARK 620 4 ATP A 304 O2A 104.3 92.7 163.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 47 OD1 REMARK 620 2 ASP B 49 OD2 95.5 REMARK 620 3 ATP B 304 O1A 107.8 89.4 REMARK 620 4 ATP B 304 O1B 167.0 93.4 81.7 REMARK 620 5 ATP B 304 O2G 90.0 173.2 92.7 80.6 REMARK 620 6 HOH B 405 O 80.8 88.7 171.3 90.0 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 47 OD2 REMARK 620 2 ASP B 49 OD1 94.2 REMARK 620 3 GLU B 87 OE1 89.7 97.7 REMARK 620 4 ATP B 304 O1A 103.4 90.4 164.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SRY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SRY B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5G4A RELATED DB: PDB REMARK 900 AADA IN COMPLEX WITH ATP AND MAGNESIUM REMARK 900 RELATED ID: 5LUH RELATED DB: PDB REMARK 900 AADA E87Q IN COMPLEX WITH ATP, CALCIUM AND STREPTOMYCIN REMARK 900 RELATED ID: 5LPA RELATED DB: PDB REMARK 900 AADA E87Q IN COMPLEX WITH ATP, CALCIUM AND DIHYDROSTREPTOMYCIN DBREF 6FZB A 1 262 UNP Q8ZPX9 Q8ZPX9_SALTY 1 262 DBREF 6FZB B 1 262 UNP Q8ZPX9 Q8ZPX9_SALTY 1 262 SEQADV 6FZB LYS A 265 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB GLY A 266 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS A 267 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS A 268 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS A 269 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS A 270 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS A 271 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS A 272 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB LYS B 265 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB GLY B 266 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS B 267 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS B 268 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS B 269 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS B 270 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS B 271 UNP Q8ZPX9 EXPRESSION TAG SEQADV 6FZB HIS B 272 UNP Q8ZPX9 EXPRESSION TAG SEQRES 1 A 270 MET THR LEU SER ILE PRO PRO SER ILE GLN CYS GLN THR SEQRES 2 A 270 GLU ALA ALA CYS ARG LEU ILE THR ARG VAL THR GLY ASP SEQRES 3 A 270 THR LEU ARG ALA ILE HIS LEU TYR GLY SER ALA VAL ALA SEQRES 4 A 270 GLY GLY LEU LYS PRO ASN SER ASP ILE ASP LEU LEU VAL SEQRES 5 A 270 THR ILE CYS GLN PRO LEU THR GLU ALA GLN ARG ALA THR SEQRES 6 A 270 LEU MET GLN GLU LEU LEU ALA LEU SER SER PRO PRO GLY SEQRES 7 A 270 ALA SER ALA GLU LYS ARG ALA LEU GLU VAL THR VAL VAL SEQRES 8 A 270 LEU TYR SER GLN LEU VAL PRO TRP CYS PHE PRO PRO SER SEQRES 9 A 270 ARG GLU MET GLN PHE GLY GLU TRP LEU ARG GLU ASP ILE SEQRES 10 A 270 CYS GLN GLY ILE TYR GLU PRO ALA GLN GLN ASP TRP ASP SEQRES 11 A 270 MET VAL LEU LEU ILE THR GLN ILE LEU GLU THR SER ILE SEQRES 12 A 270 PRO LEU LYS GLY GLU ARG ALA GLU ARG LEU PHE THR PRO SEQRES 13 A 270 ALA PRO ALA ALA GLN LEU LEU LYS ALA LEU ARG TYR PRO SEQRES 14 A 270 LEU ASP LEU TRP GLN SER THR ALA ASP VAL GLN GLY ASP SEQRES 15 A 270 GLU TYR HIS ILE VAL LEU THR LEU ALA ARG ILE TRP TYR SEQRES 16 A 270 THR LEU SER THR GLY ARG PHE THR SER LYS ASP ALA ALA SEQRES 17 A 270 ALA ASP TRP LEU LEU PRO GLN LEU PRO GLU ASP TYR ALA SEQRES 18 A 270 ALA THR LEU ARG ALA ALA GLN ARG GLU TYR LEU GLY LEU SEQRES 19 A 270 GLU GLN GLN ASP TRP HIS ILE LEU LEU PRO ALA VAL VAL SEQRES 20 A 270 ARG PHE VAL ASP PHE ALA LYS ALA HIS ILE PRO THR GLN SEQRES 21 A 270 PHE THR LYS GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 270 MET THR LEU SER ILE PRO PRO SER ILE GLN CYS GLN THR SEQRES 2 B 270 GLU ALA ALA CYS ARG LEU ILE THR ARG VAL THR GLY ASP SEQRES 3 B 270 THR LEU ARG ALA ILE HIS LEU TYR GLY SER ALA VAL ALA SEQRES 4 B 270 GLY GLY LEU LYS PRO ASN SER ASP ILE ASP LEU LEU VAL SEQRES 5 B 270 THR ILE CYS GLN PRO LEU THR GLU ALA GLN ARG ALA THR SEQRES 6 B 270 LEU MET GLN GLU LEU LEU ALA LEU SER SER PRO PRO GLY SEQRES 7 B 270 ALA SER ALA GLU LYS ARG ALA LEU GLU VAL THR VAL VAL SEQRES 8 B 270 LEU TYR SER GLN LEU VAL PRO TRP CYS PHE PRO PRO SER SEQRES 9 B 270 ARG GLU MET GLN PHE GLY GLU TRP LEU ARG GLU ASP ILE SEQRES 10 B 270 CYS GLN GLY ILE TYR GLU PRO ALA GLN GLN ASP TRP ASP SEQRES 11 B 270 MET VAL LEU LEU ILE THR GLN ILE LEU GLU THR SER ILE SEQRES 12 B 270 PRO LEU LYS GLY GLU ARG ALA GLU ARG LEU PHE THR PRO SEQRES 13 B 270 ALA PRO ALA ALA GLN LEU LEU LYS ALA LEU ARG TYR PRO SEQRES 14 B 270 LEU ASP LEU TRP GLN SER THR ALA ASP VAL GLN GLY ASP SEQRES 15 B 270 GLU TYR HIS ILE VAL LEU THR LEU ALA ARG ILE TRP TYR SEQRES 16 B 270 THR LEU SER THR GLY ARG PHE THR SER LYS ASP ALA ALA SEQRES 17 B 270 ALA ASP TRP LEU LEU PRO GLN LEU PRO GLU ASP TYR ALA SEQRES 18 B 270 ALA THR LEU ARG ALA ALA GLN ARG GLU TYR LEU GLY LEU SEQRES 19 B 270 GLU GLN GLN ASP TRP HIS ILE LEU LEU PRO ALA VAL VAL SEQRES 20 B 270 ARG PHE VAL ASP PHE ALA LYS ALA HIS ILE PRO THR GLN SEQRES 21 B 270 PHE THR LYS GLY HIS HIS HIS HIS HIS HIS HET SRY A 301 79 HET MG A 302 1 HET MG A 303 1 HET ATP A 304 43 HET CL A 305 1 HET CL A 306 1 HET PEG A 307 17 HET PEG A 308 17 HET SRY B 301 79 HET MG B 302 1 HET MG B 303 1 HET ATP B 304 43 HET GOL B 305 28 HETNAM SRY STREPTOMYCIN HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN SRY STREPTOMYCIN A HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SRY 2(C21 H39 N7 O12) FORMUL 4 MG 4(MG 2+) FORMUL 6 ATP 2(C10 H16 N5 O13 P3) FORMUL 7 CL 2(CL 1-) FORMUL 9 PEG 2(C4 H10 O3) FORMUL 15 GOL C3 H8 O3 FORMUL 16 HOH *193(H2 O) HELIX 1 AA1 PRO A 6 SER A 8 5 3 HELIX 2 AA2 ILE A 9 GLY A 25 1 17 HELIX 3 AA3 GLY A 35 GLY A 40 1 6 HELIX 4 AA4 THR A 59 SER A 74 1 16 HELIX 5 AA5 SER A 94 LEU A 96 5 3 HELIX 6 AA6 GLY A 110 TRP A 112 5 3 HELIX 7 AA7 LEU A 113 CYS A 118 1 6 HELIX 8 AA8 TRP A 129 THR A 141 1 13 HELIX 9 AA9 ARG A 149 PHE A 154 1 6 HELIX 10 AB1 PRO A 158 TYR A 168 1 11 HELIX 11 AB2 TYR A 168 TRP A 173 1 6 HELIX 12 AB3 SER A 175 GLN A 180 1 6 HELIX 13 AB4 ASP A 182 GLY A 200 1 19 HELIX 14 AB5 SER A 204 LEU A 213 1 10 HELIX 15 AB6 PRO A 214 LEU A 216 5 3 HELIX 16 AB7 PRO A 217 LEU A 232 1 16 HELIX 17 AB8 LEU A 242 ILE A 257 1 16 HELIX 18 AB9 PRO B 6 SER B 8 5 3 HELIX 19 AC1 ILE B 9 GLY B 25 1 17 HELIX 20 AC2 GLY B 35 GLY B 40 1 6 HELIX 21 AC3 THR B 59 SER B 74 1 16 HELIX 22 AC4 SER B 94 LEU B 96 5 3 HELIX 23 AC5 GLY B 110 TRP B 112 5 3 HELIX 24 AC6 LEU B 113 CYS B 118 1 6 HELIX 25 AC7 TRP B 129 THR B 141 1 13 HELIX 26 AC8 ARG B 149 LEU B 153 5 5 HELIX 27 AC9 PRO B 158 TYR B 168 1 11 HELIX 28 AD1 PRO B 169 LEU B 172 5 4 HELIX 29 AD2 SER B 175 GLN B 180 1 6 HELIX 30 AD3 ASP B 182 GLY B 200 1 19 HELIX 31 AD4 SER B 204 LEU B 213 1 10 HELIX 32 AD5 PRO B 214 LEU B 216 5 3 HELIX 33 AD6 PRO B 217 LEU B 232 1 16 HELIX 34 AD7 ASP B 238 ILE B 257 1 20 SHEET 1 AA1 5 MET A 107 PHE A 109 0 SHEET 2 AA1 5 LEU A 86 LEU A 92 -1 N VAL A 88 O PHE A 109 SHEET 3 AA1 5 ILE A 48 ILE A 54 1 N VAL A 52 O THR A 89 SHEET 4 AA1 5 LEU A 28 TYR A 34 -1 N ARG A 29 O THR A 53 SHEET 5 AA1 5 ILE A 143 LYS A 146 -1 O ILE A 143 N LEU A 33 SHEET 1 AA2 2 SER A 104 ARG A 105 0 SHEET 2 AA2 2 GLN A 126 GLN A 127 -1 O GLN A 126 N ARG A 105 SHEET 1 AA3 6 GLN B 126 GLN B 127 0 SHEET 2 AA3 6 SER B 104 PHE B 109 -1 N ARG B 105 O GLN B 126 SHEET 3 AA3 6 LEU B 86 LEU B 92 -1 N VAL B 88 O PHE B 109 SHEET 4 AA3 6 ILE B 48 ILE B 54 1 N VAL B 52 O THR B 89 SHEET 5 AA3 6 LEU B 28 TYR B 34 -1 N ARG B 29 O THR B 53 SHEET 6 AA3 6 ILE B 143 LYS B 146 -1 O ILE B 143 N LEU B 33 SSBOND 1 CYS A 11 CYS B 11 1555 1555 2.04 LINK OD1 ASP A 47 MG MG A 302 1555 1555 2.05 LINK OD2 ASP A 47 MG MG A 303 1555 1555 2.30 LINK OD2 ASP A 49 MG MG A 302 1555 1555 2.18 LINK OD1 ASP A 49 MG MG A 303 1555 1555 2.22 LINK OE1 GLU A 87 MG MG A 303 1555 1555 2.05 LINK MG MG A 302 O2A ATP A 304 1555 1555 2.05 LINK MG MG A 302 O2B ATP A 304 1555 1555 1.93 LINK MG MG A 302 O2G ATP A 304 1555 1555 2.02 LINK MG MG A 302 O HOH A 407 1555 1555 2.09 LINK MG MG A 303 O2A ATP A 304 1555 1555 2.36 LINK OD1 ASP B 47 MG MG B 302 1555 1555 2.06 LINK OD2 ASP B 47 MG MG B 303 1555 1555 2.24 LINK OD2 ASP B 49 MG MG B 302 1555 1555 2.17 LINK OD1 ASP B 49 MG MG B 303 1555 1555 2.36 LINK OE1 GLU B 87 MG MG B 303 1555 1555 2.12 LINK MG MG B 302 O1A ATP B 304 1555 1555 2.04 LINK MG MG B 302 O1B ATP B 304 1555 1555 1.90 LINK MG MG B 302 O2G ATP B 304 1555 1555 2.06 LINK MG MG B 302 O HOH B 405 1555 1555 2.16 LINK MG MG B 303 O1A ATP B 304 1555 1555 2.36 CISPEP 1 VAL A 97 PRO A 98 0 -2.10 CISPEP 2 PHE A 101 PRO A 102 0 -4.38 CISPEP 3 VAL B 97 PRO B 98 0 -2.46 CISPEP 4 PHE B 101 PRO B 102 0 -5.31 SITE 1 AC1 10 GLU A 87 TRP A 112 ASP A 130 TRP A 173 SITE 2 AC1 10 ALA A 177 ASP A 178 ASP A 182 HIS A 185 SITE 3 AC1 10 ATP A 304 HOH A 411 SITE 1 AC2 5 ASP A 47 ASP A 49 MG A 303 ATP A 304 SITE 2 AC2 5 HOH A 407 SITE 1 AC3 6 ASP A 47 ASP A 49 GLU A 87 MG A 302 SITE 2 AC3 6 ATP A 304 HOH A 425 SITE 1 AC4 25 SER A 36 GLY A 41 SER A 46 ASP A 47 SITE 2 AC4 25 ASP A 49 ASP A 130 LEU A 133 LEU A 134 SITE 3 AC4 25 GLN A 137 ARG A 192 ILE A 193 THR A 196 SITE 4 AC4 25 PHE A 202 LYS A 205 TYR A 231 SRY A 301 SITE 5 AC4 25 MG A 302 MG A 303 HOH A 407 HOH A 422 SITE 6 AC4 25 HOH A 448 HOH A 457 HOH A 460 HOH A 480 SITE 7 AC4 25 HOH A 483 SITE 1 AC5 3 GLY B 41 LEU B 42 PHE B 252 SITE 1 AC6 4 GLY A 41 LEU A 42 PHE A 252 HOH A 440 SITE 1 AC7 4 GLU A 151 ARG A 152 PHE A 154 THR A 155 SITE 1 AC8 4 GLU B 151 ARG B 152 LEU B 153 THR B 155 SITE 1 AC9 10 GLU B 87 TRP B 112 ASP B 130 TRP B 173 SITE 2 AC9 10 ALA B 177 ASP B 178 ASP B 182 HIS B 185 SITE 3 AC9 10 ATP B 304 HOH B 439 SITE 1 AD1 5 ASP B 47 ASP B 49 MG B 303 ATP B 304 SITE 2 AD1 5 HOH B 405 SITE 1 AD2 5 ASP B 47 ASP B 49 GLU B 87 MG B 302 SITE 2 AD2 5 ATP B 304 SITE 1 AD3 26 SER B 36 GLY B 41 SER B 46 ASP B 47 SITE 2 AD3 26 ASP B 49 ASP B 130 LEU B 133 LEU B 134 SITE 3 AD3 26 GLN B 137 LEU B 166 ARG B 192 ILE B 193 SITE 4 AD3 26 THR B 196 PHE B 202 LYS B 205 TYR B 231 SITE 5 AD3 26 SRY B 301 MG B 302 MG B 303 HOH B 405 SITE 6 AD3 26 HOH B 422 HOH B 438 HOH B 447 HOH B 459 SITE 7 AD3 26 HOH B 470 HOH B 472 SITE 1 AD4 7 ALA A 15 ARG A 18 ARG A 22 ALA B 15 SITE 2 AD4 7 ARG B 18 LEU B 19 ARG B 22 CRYST1 82.670 82.670 79.860 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012096 0.006984 0.000000 0.00000 SCALE2 0.000000 0.013968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012522 0.00000