HEADER TRANSCRIPTION 14-MAR-18 6FZF TITLE PPAR MUTANT COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA COMPND 9 COACTIVATOR 1-ALPHA; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: PPARGC-1-ALPHA,LIGAND EFFECT MODULATOR 6; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 2 17-JAN-24 6FZF 1 REMARK REVDAT 1 13-FEB-19 6FZF 0 JRNL AUTH N.ROCHEL,C.KRUCKER,L.COUTOS-THEVENOT,J.OSZ,R.ZHANG,E.GUYON, JRNL AUTH 2 W.ZITA,S.VANTHONG,O.A.HERNANDEZ,M.BOURGUET,K.A.BADAWY, JRNL AUTH 3 F.DUFOUR,C.PELUSO-ILTIS,S.HECKLER-BEJI,A.DEJAEGERE,A.KAMOUN, JRNL AUTH 4 A.DE REYNIES,Y.NEUZILLET,S.REBOUISSOU,C.BERAUD,H.LANG, JRNL AUTH 5 T.MASSFELDER,Y.ALLORY,S.CIANFERANI,R.H.STOTE,F.RADVANYI, JRNL AUTH 6 I.BERNARD-PIERROT JRNL TITL RECURRENT ACTIVATING MUTATIONS OF PPAR GAMMA ASSOCIATED WITH JRNL TITL 2 LUMINAL BLADDER TUMORS. JRNL REF NAT COMMUN V. 10 253 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30651555 JRNL DOI 10.1038/S41467-018-08157-Y REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 50664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.6265 - 4.3174 0.99 4548 142 0.1262 0.1455 REMARK 3 2 4.3174 - 3.4351 0.98 4454 140 0.1155 0.1571 REMARK 3 3 3.4351 - 3.0033 0.98 4440 139 0.1502 0.2052 REMARK 3 4 3.0033 - 2.7298 0.98 4458 140 0.1650 0.2166 REMARK 3 5 2.7298 - 2.5348 0.99 4500 141 0.1701 0.2333 REMARK 3 6 2.5348 - 2.3857 0.99 4487 140 0.1744 0.2171 REMARK 3 7 2.3857 - 2.2665 0.99 4446 140 0.1732 0.2152 REMARK 3 8 2.2665 - 2.1680 0.99 4443 139 0.1945 0.2623 REMARK 3 9 2.1680 - 2.0847 0.99 4513 141 0.2052 0.2653 REMARK 3 10 2.0847 - 2.0129 0.99 4441 140 0.2371 0.3059 REMARK 3 11 2.0129 - 1.9500 0.98 4395 137 0.2831 0.3036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4999 REMARK 3 ANGLE : 0.845 6771 REMARK 3 CHIRALITY : 0.046 771 REMARK 3 PLANARITY : 0.005 923 REMARK 3 DIHEDRAL : 15.293 3189 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5572 31.3671 -23.4028 REMARK 3 T TENSOR REMARK 3 T11: 0.2720 T22: 0.2733 REMARK 3 T33: 0.2296 T12: -0.0017 REMARK 3 T13: 0.0396 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 3.7852 L22: 3.9263 REMARK 3 L33: 8.5691 L12: 2.7558 REMARK 3 L13: 4.6897 L23: 2.1157 REMARK 3 S TENSOR REMARK 3 S11: -0.3018 S12: 0.5684 S13: 0.1693 REMARK 3 S21: -0.2690 S22: 0.2555 S23: 0.1172 REMARK 3 S31: -0.3513 S32: 0.2889 S33: 0.1049 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8143 44.6601 -0.9627 REMARK 3 T TENSOR REMARK 3 T11: 0.3127 T22: 0.3350 REMARK 3 T33: 0.5658 T12: -0.0565 REMARK 3 T13: -0.0177 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 9.2575 L22: 7.0380 REMARK 3 L33: 2.1188 L12: 0.8819 REMARK 3 L13: -2.8196 L23: -0.6420 REMARK 3 S TENSOR REMARK 3 S11: -0.0690 S12: 0.0795 S13: 1.0421 REMARK 3 S21: 0.0475 S22: -0.0772 S23: 0.8939 REMARK 3 S31: -0.4324 S32: -0.4252 S33: 0.1397 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8368 42.3414 7.5577 REMARK 3 T TENSOR REMARK 3 T11: 0.5414 T22: 0.6000 REMARK 3 T33: 0.6498 T12: 0.0708 REMARK 3 T13: -0.0319 T23: -0.1523 REMARK 3 L TENSOR REMARK 3 L11: 3.5873 L22: 1.5882 REMARK 3 L33: 3.8253 L12: 0.0364 REMARK 3 L13: 1.7206 L23: -0.0050 REMARK 3 S TENSOR REMARK 3 S11: -0.1311 S12: -0.9750 S13: 0.4944 REMARK 3 S21: 0.8088 S22: 0.1519 S23: 0.1729 REMARK 3 S31: -0.8184 S32: -0.7054 S33: 0.4666 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0274 27.7761 -8.4959 REMARK 3 T TENSOR REMARK 3 T11: 0.2539 T22: 0.2450 REMARK 3 T33: 0.2572 T12: -0.0027 REMARK 3 T13: 0.0480 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.8852 L22: 1.4002 REMARK 3 L33: 3.5289 L12: 1.0958 REMARK 3 L13: 1.8900 L23: 1.0182 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.1485 S13: 0.0762 REMARK 3 S21: 0.0926 S22: -0.1747 S23: 0.1899 REMARK 3 S31: 0.1586 S32: -0.2896 S33: 0.2170 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1818 29.8267 -1.9784 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.2548 REMARK 3 T33: 0.2777 T12: -0.0019 REMARK 3 T13: 0.0151 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.4583 L22: 1.8712 REMARK 3 L33: 5.8170 L12: 0.6307 REMARK 3 L13: -0.4531 L23: 1.7660 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -0.1904 S13: 0.1033 REMARK 3 S21: 0.1456 S22: -0.0671 S23: -0.0325 REMARK 3 S31: 0.2472 S32: 0.2172 S33: 0.0432 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7438 20.0844 -17.4577 REMARK 3 T TENSOR REMARK 3 T11: 0.3102 T22: 0.1958 REMARK 3 T33: 0.2428 T12: -0.0114 REMARK 3 T13: 0.0188 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 7.7322 L22: 3.5057 REMARK 3 L33: 3.5254 L12: 2.7604 REMARK 3 L13: -2.7750 L23: -0.9703 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: 0.3389 S13: -0.4428 REMARK 3 S21: 0.1134 S22: 0.0194 S23: -0.0062 REMARK 3 S31: 0.1945 S32: -0.1720 S33: 0.1495 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5520 16.6895 -26.2702 REMARK 3 T TENSOR REMARK 3 T11: 0.4170 T22: 0.2530 REMARK 3 T33: 0.2667 T12: 0.0205 REMARK 3 T13: 0.0607 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 6.2427 L22: 3.1981 REMARK 3 L33: 4.3413 L12: 1.5251 REMARK 3 L13: -2.1112 L23: -0.3660 REMARK 3 S TENSOR REMARK 3 S11: -0.5015 S12: 0.7088 S13: -0.9312 REMARK 3 S21: -0.3677 S22: 0.1503 S23: -0.3067 REMARK 3 S31: 0.5713 S32: -0.0155 S33: 0.3164 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2580 17.3185 -4.3765 REMARK 3 T TENSOR REMARK 3 T11: 0.4319 T22: 0.2368 REMARK 3 T33: 0.2933 T12: -0.0253 REMARK 3 T13: 0.0357 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 3.6920 L22: 3.0734 REMARK 3 L33: 4.9022 L12: -1.7874 REMARK 3 L13: -3.8370 L23: 3.2067 REMARK 3 S TENSOR REMARK 3 S11: -0.4947 S12: -0.1697 S13: -0.4556 REMARK 3 S21: 0.2932 S22: -0.1290 S23: 0.1306 REMARK 3 S31: 1.5490 S32: 0.0843 S33: 0.6212 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 460 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9077 24.8825 3.9677 REMARK 3 T TENSOR REMARK 3 T11: 0.3414 T22: 0.4103 REMARK 3 T33: 0.3147 T12: -0.0842 REMARK 3 T13: 0.1372 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 9.7112 L22: 4.6085 REMARK 3 L33: 6.6595 L12: 0.1851 REMARK 3 L13: 5.4953 L23: -1.5678 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: -0.6725 S13: -0.1410 REMARK 3 S21: 0.2353 S22: -0.4418 S23: 0.2436 REMARK 3 S31: 0.6169 S32: -0.9541 S33: 0.4628 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 203 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3010 -3.6370 -31.5191 REMARK 3 T TENSOR REMARK 3 T11: 0.6907 T22: 0.3529 REMARK 3 T33: 0.2335 T12: 0.0230 REMARK 3 T13: 0.0218 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 6.5642 L22: 6.1261 REMARK 3 L33: 3.2370 L12: 0.5657 REMARK 3 L13: 0.1316 L23: -4.3487 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: 0.8776 S13: 0.1723 REMARK 3 S21: -1.3828 S22: -0.0426 S23: 0.1995 REMARK 3 S31: 0.6105 S32: 0.1469 S33: -0.0387 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7666 -14.3965 -17.2745 REMARK 3 T TENSOR REMARK 3 T11: 0.4342 T22: 0.2513 REMARK 3 T33: 0.3108 T12: -0.0649 REMARK 3 T13: -0.0012 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 7.9752 L22: 9.5128 REMARK 3 L33: 5.8743 L12: 7.3712 REMARK 3 L13: 0.0932 L23: -3.8099 REMARK 3 S TENSOR REMARK 3 S11: -0.3399 S12: 0.0967 S13: -0.3982 REMARK 3 S21: -0.6065 S22: 0.1809 S23: 0.0302 REMARK 3 S31: 0.5862 S32: -0.6184 S33: 0.1601 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 238 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4318 -23.3049 -3.7048 REMARK 3 T TENSOR REMARK 3 T11: 0.3833 T22: 0.3199 REMARK 3 T33: 0.4420 T12: -0.0970 REMARK 3 T13: 0.0617 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 8.5719 L22: 7.1159 REMARK 3 L33: 3.0097 L12: -1.1762 REMARK 3 L13: 2.1119 L23: -2.7732 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: 0.1222 S13: -0.5722 REMARK 3 S21: -0.5468 S22: 0.0890 S23: 0.2574 REMARK 3 S31: 0.6398 S32: 0.3466 S33: -0.0153 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0749 -21.6044 5.5658 REMARK 3 T TENSOR REMARK 3 T11: 0.4146 T22: 0.4539 REMARK 3 T33: 0.4402 T12: 0.0184 REMARK 3 T13: 0.0635 T23: 0.0927 REMARK 3 L TENSOR REMARK 3 L11: 9.3809 L22: 7.2183 REMARK 3 L33: 5.6603 L12: -0.4662 REMARK 3 L13: -1.1713 L23: -0.1172 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: -0.7346 S13: -0.1801 REMARK 3 S21: 0.8602 S22: 0.2571 S23: 0.0590 REMARK 3 S31: 0.1736 S32: -0.2140 S33: -0.1550 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 277 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2137 -5.6350 -9.1317 REMARK 3 T TENSOR REMARK 3 T11: 0.3282 T22: 0.1905 REMARK 3 T33: 0.2363 T12: -0.0073 REMARK 3 T13: 0.0061 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 2.2204 L22: 2.0366 REMARK 3 L33: 1.8779 L12: 0.3082 REMARK 3 L13: -0.1700 L23: -0.7967 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.0798 S13: 0.0112 REMARK 3 S21: 0.1239 S22: -0.0343 S23: 0.0224 REMARK 3 S31: -0.1185 S32: 0.0174 S33: 0.0343 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 403 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8586 5.7266 -26.5080 REMARK 3 T TENSOR REMARK 3 T11: 0.5770 T22: 0.2671 REMARK 3 T33: 0.3522 T12: 0.0267 REMARK 3 T13: -0.0390 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 7.8067 L22: 2.8335 REMARK 3 L33: 5.4271 L12: 0.5114 REMARK 3 L13: 4.7027 L23: -0.0066 REMARK 3 S TENSOR REMARK 3 S11: -0.5338 S12: 0.4626 S13: 0.9488 REMARK 3 S21: -0.7267 S22: 0.1920 S23: 0.4111 REMARK 3 S31: -0.5185 S32: -0.0653 S33: 0.3299 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 431 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3071 3.6941 -4.2379 REMARK 3 T TENSOR REMARK 3 T11: 0.5424 T22: 0.2545 REMARK 3 T33: 0.3316 T12: 0.0198 REMARK 3 T13: 0.0274 T23: -0.0620 REMARK 3 L TENSOR REMARK 3 L11: 2.9470 L22: 4.1405 REMARK 3 L33: 3.3271 L12: -1.1184 REMARK 3 L13: 2.8212 L23: -1.8322 REMARK 3 S TENSOR REMARK 3 S11: -0.5668 S12: -0.3316 S13: 0.4101 REMARK 3 S21: 1.0607 S22: 0.1085 S23: -0.0974 REMARK 3 S31: -1.7583 S32: -0.2261 S33: 0.4829 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 460 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1981 -4.3722 2.8747 REMARK 3 T TENSOR REMARK 3 T11: 0.5019 T22: 0.4382 REMARK 3 T33: 0.2795 T12: -0.0547 REMARK 3 T13: -0.0480 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 7.1394 L22: 7.4019 REMARK 3 L33: 2.2553 L12: -0.2836 REMARK 3 L13: -2.9822 L23: 1.6831 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: -1.1902 S13: 0.0766 REMARK 3 S21: 0.9635 S22: -0.3565 S23: -0.3622 REMARK 3 S31: -0.8664 S32: 0.6129 S33: 0.1565 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 140 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.8848 29.1067 -8.4248 REMARK 3 T TENSOR REMARK 3 T11: 0.2677 T22: 0.4680 REMARK 3 T33: 0.4617 T12: -0.0294 REMARK 3 T13: 0.0539 T23: -0.1288 REMARK 3 L TENSOR REMARK 3 L11: 5.9499 L22: 4.7165 REMARK 3 L33: 3.3753 L12: -3.1784 REMARK 3 L13: 3.7369 L23: -0.2373 REMARK 3 S TENSOR REMARK 3 S11: 0.2399 S12: 0.4182 S13: -0.6118 REMARK 3 S21: -0.3432 S22: 0.1091 S23: 0.5111 REMARK 3 S31: -0.1155 S32: -0.8773 S33: -0.2992 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 140 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0755 -8.3494 -9.9038 REMARK 3 T TENSOR REMARK 3 T11: 0.3563 T22: 0.4339 REMARK 3 T33: 0.5110 T12: 0.0085 REMARK 3 T13: 0.0131 T23: 0.0615 REMARK 3 L TENSOR REMARK 3 L11: 3.6736 L22: 3.4780 REMARK 3 L33: 3.6365 L12: -2.2539 REMARK 3 L13: -1.8399 L23: -1.1304 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.2941 S13: -0.0988 REMARK 3 S21: -0.0137 S22: -0.2797 S23: -0.6455 REMARK 3 S31: 0.8690 S32: 1.0707 S33: 0.2324 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972422 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 17.626 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.75330 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1PRG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M AMMONIUM SULFATE, REMARK 280 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.84200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 227 REMARK 465 SER A 228 REMARK 465 HIS A 229 REMARK 465 MET A 230 REMARK 465 GLN A 231 REMARK 465 LEU A 232 REMARK 465 ASN A 233 REMARK 465 PRO A 234 REMARK 465 GLY B 227 REMARK 465 SER B 228 REMARK 465 HIS B 229 REMARK 465 MET B 230 REMARK 465 GLU C 139 REMARK 465 GLU D 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 268 44.18 -77.12 REMARK 500 PHE A 292 110.02 -161.80 REMARK 500 SER A 456 76.74 -115.48 REMARK 500 GLN A 458 61.58 -116.77 REMARK 500 LYS B 268 59.50 -92.02 REMARK 500 PHE B 292 114.12 -167.59 REMARK 500 SER B 456 73.77 -104.42 REMARK 500 ASP B 490 49.71 -107.24 REMARK 500 LEU B 504 -75.80 -89.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDK A 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDK B 4000 DBREF 6FZF A 231 505 UNP P37231 PPARG_HUMAN 231 505 DBREF 6FZF B 231 505 UNP P37231 PPARG_HUMAN 231 505 DBREF 6FZF C 139 152 UNP Q9UBK2 PRGC1_HUMAN 139 152 DBREF 6FZF D 139 152 UNP Q9UBK2 PRGC1_HUMAN 139 152 SEQADV 6FZF GLY A 227 UNP P37231 EXPRESSION TAG SEQADV 6FZF SER A 228 UNP P37231 EXPRESSION TAG SEQADV 6FZF HIS A 229 UNP P37231 EXPRESSION TAG SEQADV 6FZF MET A 230 UNP P37231 EXPRESSION TAG SEQADV 6FZF MET A 475 UNP P37231 THR 475 ENGINEERED MUTATION SEQADV 6FZF GLY B 227 UNP P37231 EXPRESSION TAG SEQADV 6FZF SER B 228 UNP P37231 EXPRESSION TAG SEQADV 6FZF HIS B 229 UNP P37231 EXPRESSION TAG SEQADV 6FZF MET B 230 UNP P37231 EXPRESSION TAG SEQADV 6FZF MET B 475 UNP P37231 THR 475 ENGINEERED MUTATION SEQRES 1 A 279 GLY SER HIS MET GLN LEU ASN PRO GLU SER ALA ASP LEU SEQRES 2 A 279 ARG ALA LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SEQRES 3 A 279 SER PHE PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU SEQRES 4 A 279 THR GLY LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR SEQRES 5 A 279 ASP MET ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS SEQRES 6 A 279 PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU SEQRES 7 A 279 VAL ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER SEQRES 8 A 279 VAL GLU ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER SEQRES 9 A 279 ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL SEQRES 10 A 279 THR LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR SEQRES 11 A 279 MET LEU ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SEQRES 12 A 279 SER GLU GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SEQRES 13 A 279 SER LEU ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS SEQRES 14 A 279 PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP SEQRES 15 A 279 ASP SER ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SEQRES 16 A 279 SER GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE SEQRES 17 A 279 GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU SEQRES 18 A 279 GLN LEU LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE SEQRES 19 A 279 ALA LYS LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE SEQRES 20 A 279 VAL MET GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS SEQRES 21 A 279 THR GLU THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU SEQRES 22 A 279 ILE TYR LYS ASP LEU TYR SEQRES 1 B 279 GLY SER HIS MET GLN LEU ASN PRO GLU SER ALA ASP LEU SEQRES 2 B 279 ARG ALA LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SEQRES 3 B 279 SER PHE PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU SEQRES 4 B 279 THR GLY LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR SEQRES 5 B 279 ASP MET ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS SEQRES 6 B 279 PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU SEQRES 7 B 279 VAL ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER SEQRES 8 B 279 VAL GLU ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER SEQRES 9 B 279 ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL SEQRES 10 B 279 THR LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR SEQRES 11 B 279 MET LEU ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SEQRES 12 B 279 SER GLU GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SEQRES 13 B 279 SER LEU ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS SEQRES 14 B 279 PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP SEQRES 15 B 279 ASP SER ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SEQRES 16 B 279 SER GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE SEQRES 17 B 279 GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU SEQRES 18 B 279 GLN LEU LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE SEQRES 19 B 279 ALA LYS LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE SEQRES 20 B 279 VAL MET GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS SEQRES 21 B 279 THR GLU THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU SEQRES 22 B 279 ILE TYR LYS ASP LEU TYR SEQRES 1 C 14 GLU GLU PRO SER LEU LEU LYS LYS LEU LEU LEU ALA PRO SEQRES 2 C 14 ALA SEQRES 1 D 14 GLU GLU PRO SER LEU LEU LYS LYS LEU LEU LEU ALA PRO SEQRES 2 D 14 ALA HET EDK A4000 37 HET EDK B4000 37 HETNAM EDK (2~{S})-3-[4-[2-[METHYL(PYRIDIN-2-YL) HETNAM 2 EDK AMINO]ETHOXY]PHENYL]-2-[[2-(PHENYLCARBONYL) HETNAM 3 EDK PHENYL]AMINO]PROPANOIC ACID FORMUL 5 EDK 2(C30 H29 N3 O4) FORMUL 7 HOH *567(H2 O) HELIX 1 AA1 GLU A 235 PHE A 254 1 20 HELIX 2 AA2 THR A 257 GLY A 267 1 11 HELIX 3 AA3 ASP A 279 GLU A 287 1 9 HELIX 4 AA4 ASP A 288 ILE A 290 5 3 HELIX 5 AA5 PRO A 297 SER A 302 5 6 HELIX 6 AA6 GLU A 304 ILE A 331 1 28 HELIX 7 AA7 GLY A 333 LEU A 337 5 5 HELIX 8 AA8 ASP A 338 LEU A 361 1 24 HELIX 9 AA9 ARG A 378 LEU A 384 1 7 HELIX 10 AB1 PRO A 387 PHE A 391 5 5 HELIX 11 AB2 MET A 392 ALA A 404 1 13 HELIX 12 AB3 ASP A 408 LEU A 421 1 14 HELIX 13 AB4 ASN A 430 HIS A 453 1 24 HELIX 14 AB5 GLN A 458 GLU A 488 1 31 HELIX 15 AB6 HIS A 494 LYS A 502 1 9 HELIX 16 AB7 ASN B 233 PHE B 254 1 22 HELIX 17 AB8 THR B 257 THR B 266 1 10 HELIX 18 AB9 ASP B 279 GLY B 286 1 8 HELIX 19 AC1 GLU B 287 ILE B 290 5 4 HELIX 20 AC2 PRO B 297 SER B 302 5 6 HELIX 21 AC3 GLU B 304 SER B 330 1 27 HELIX 22 AC4 ASP B 338 LEU B 361 1 24 HELIX 23 AC5 ARG B 378 LEU B 384 1 7 HELIX 24 AC6 PRO B 387 PHE B 391 5 5 HELIX 25 AC7 MET B 392 ALA B 404 1 13 HELIX 26 AC8 ASP B 408 LEU B 421 1 14 HELIX 27 AC9 ASN B 430 HIS B 453 1 24 HELIX 28 AD1 GLN B 458 GLU B 488 1 31 HELIX 29 AD2 HIS B 494 LYS B 502 1 9 HELIX 30 AD3 SER C 142 ALA C 150 1 9 HELIX 31 AD4 SER D 142 ALA D 150 1 9 SHEET 1 AA1 4 PHE A 275 ILE A 277 0 SHEET 2 AA1 4 GLY A 374 THR A 377 1 O PHE A 375 N PHE A 275 SHEET 3 AA1 4 GLY A 366 ILE A 369 -1 N ILE A 369 O GLY A 374 SHEET 4 AA1 4 MET A 362 ASN A 363 -1 N ASN A 363 O GLY A 366 SHEET 1 AA2 4 PHE B 275 ILE B 277 0 SHEET 2 AA2 4 GLY B 374 THR B 377 1 O PHE B 375 N ILE B 277 SHEET 3 AA2 4 GLY B 366 ILE B 369 -1 N VAL B 367 O MET B 376 SHEET 4 AA2 4 MET B 362 ASN B 363 -1 N ASN B 363 O GLY B 366 CISPEP 1 LYS A 386 PRO A 387 0 -2.63 CISPEP 2 LYS B 386 PRO B 387 0 -0.29 SITE 1 AC1 16 PHE A 310 GLY A 312 CYS A 313 GLN A 314 SITE 2 AC1 16 SER A 317 HIS A 351 TYR A 355 LEU A 358 SITE 3 AC1 16 ILE A 369 PHE A 388 PHE A 391 HIS A 477 SITE 4 AC1 16 LEU A 497 TYR A 501 HOH A4228 HOH A4238 SITE 1 AC2 14 PHE B 310 GLY B 312 CYS B 313 GLN B 314 SITE 2 AC2 14 SER B 317 HIS B 351 LEU B 358 ILE B 369 SITE 3 AC2 14 PHE B 388 PHE B 391 HIS B 477 LEU B 497 SITE 4 AC2 14 TYR B 501 HOH B4158 CRYST1 53.644 123.684 54.466 90.00 95.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018641 0.000000 0.001733 0.00000 SCALE2 0.000000 0.008085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018439 0.00000