HEADER TRANSCRIPTION 15-MAR-18 6FZS TITLE CRYSTAL STRUCTURE OF SMAD5-MH1 BOUND TO THE GGCGC SITE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MOTHERS AGAINST DPP HOMOLOG 5,JV5-1,SMAD FAMILY MEMBER 5, COMPND 5 HSMAD5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3'); COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMAD5, MADH5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS SMADS, TRANSCRIPTION FACTOR, DNA COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.KACZMARSKA,J.A.MARQUEZ,M.J.MACIAS REVDAT 4 17-JAN-24 6FZS 1 REMARK REVDAT 3 20-JAN-21 6FZS 1 JRNL REVDAT 2 07-OCT-20 6FZS 1 REMARK REVDAT 1 02-OCT-19 6FZS 0 JRNL AUTH L.RUIZ,Z.KACZMARSKA,T.GOMES,E.ARAGON,C.TORNER,R.FREIER, JRNL AUTH 2 B.BAGINSKI,P.MARTIN-MALPARTIDA,J.A.MARQUEZ,T.N.CORDEIRO, JRNL AUTH 3 R.PLUTA,M.J.MACIAS JRNL TITL UNVEILING THE DIMER/MONOMER PROPENSITIES OF SMAD MH1-DNA JRNL TITL 2 COMPLEXES JRNL REF COMPUTATIONAL AND STRUCTURAL V. 19 2021 JRNL REF 2 BIOTECHNOLOGY JOURNAL JRNL DOI 10.1016/J.CSBJ.2020.12.044 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 NUMBER OF REFLECTIONS : 16665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 766 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.47 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.77 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 704 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2347 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 660 REMARK 3 BIN R VALUE (WORKING SET) : 0.2317 REMARK 3 BIN FREE R VALUE : 0.2787 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.25 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2010 REMARK 3 NUCLEIC ACID ATOMS : 656 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.81910 REMARK 3 B22 (A**2) : -1.13330 REMARK 3 B33 (A**2) : -1.68580 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.381 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.248 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.339 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.241 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2798 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3916 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 890 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 367 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2798 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 346 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2755 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.28 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 16.9895 -6.2586 -18.8186 REMARK 3 T TENSOR REMARK 3 T11: -0.0573 T22: -0.1046 REMARK 3 T33: -0.0340 T12: 0.0048 REMARK 3 T13: -0.0049 T23: -0.0709 REMARK 3 L TENSOR REMARK 3 L11: 1.7415 L22: 0.8747 REMARK 3 L33: 4.1587 L12: -0.4544 REMARK 3 L13: -1.4785 L23: 0.0075 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.3218 S13: 0.0123 REMARK 3 S21: 0.0530 S22: 0.0203 S23: 0.0837 REMARK 3 S31: -0.0296 S32: 0.1024 S33: -0.0032 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 27.7343 -48.2959 -5.9429 REMARK 3 T TENSOR REMARK 3 T11: 0.0409 T22: -0.1056 REMARK 3 T33: -0.1417 T12: -0.0843 REMARK 3 T13: 0.0079 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.8391 L22: 1.2377 REMARK 3 L33: 1.6218 L12: -0.2635 REMARK 3 L13: -1.1741 L23: -0.8645 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: -0.0600 S13: -0.1750 REMARK 3 S21: 0.0443 S22: 0.0713 S23: 0.2038 REMARK 3 S31: 0.1569 S32: -0.2954 S33: -0.0492 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.4226 -28.8806 -8.8861 REMARK 3 T TENSOR REMARK 3 T11: -0.3500 T22: -0.1806 REMARK 3 T33: -0.2420 T12: -0.0994 REMARK 3 T13: -0.0387 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 2.8124 L22: 14.5402 REMARK 3 L33: 4.6858 L12: -0.6341 REMARK 3 L13: -1.0717 L23: -1.4957 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.1709 S13: -0.1211 REMARK 3 S21: 0.0837 S22: 0.4748 S23: -0.6846 REMARK 3 S31: -0.4956 S32: -0.2450 S33: -0.4135 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 18.1487 -26.5229 -10.1145 REMARK 3 T TENSOR REMARK 3 T11: -0.2336 T22: -0.3036 REMARK 3 T33: -0.3391 T12: -0.0173 REMARK 3 T13: -0.0354 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.3020 L22: 13.3474 REMARK 3 L33: 6.4547 L12: -2.7090 REMARK 3 L13: -2.6135 L23: -2.4927 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: -0.5252 S13: 0.1627 REMARK 3 S21: -0.2229 S22: 0.3503 S23: -0.2147 REMARK 3 S31: -0.6440 S32: -0.4135 S33: -0.2725 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 53.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KMP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NAF, 0.1 M BIS-TRIS PROPANE PH REMARK 280 7.5, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.88200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.59400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.68700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.59400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.88200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.68700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.76400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 36.68700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.59400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 VAL A 135 REMARK 465 LEU A 136 REMARK 465 PRO A 137 REMARK 465 PRO A 138 REMARK 465 GLY B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 PRO B 137 REMARK 465 PRO B 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 10 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 40 CD CE NZ REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 PHE B 10 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 26 CD OE1 OE2 REMARK 470 LYS B 40 CD CE NZ REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 SER B 133 OG REMARK 470 LEU B 136 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 11 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC D 11 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 79 63.33 36.82 REMARK 500 ARG A 94 -54.72 -135.23 REMARK 500 SER B 79 72.53 41.76 REMARK 500 ARG B 94 -53.97 -135.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 110 SG 111.9 REMARK 620 3 CYS A 122 SG 110.7 109.0 REMARK 620 4 HIS A 127 ND1 103.6 111.3 110.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 CYS B 110 SG 110.3 REMARK 620 3 CYS B 122 SG 108.8 105.3 REMARK 620 4 HIS B 127 ND1 106.5 115.4 110.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 DBREF 6FZS A 9 138 UNP Q99717 SMAD5_HUMAN 9 138 DBREF 6FZS B 9 138 UNP Q99717 SMAD5_HUMAN 9 138 DBREF 6FZS C 1 16 PDB 6FZS 6FZS 1 16 DBREF 6FZS D 1 16 PDB 6FZS 6FZS 1 16 SEQADV 6FZS GLY A 7 UNP Q99717 EXPRESSION TAG SEQADV 6FZS PRO A 8 UNP Q99717 EXPRESSION TAG SEQADV 6FZS GLY B 7 UNP Q99717 EXPRESSION TAG SEQADV 6FZS PRO B 8 UNP Q99717 EXPRESSION TAG SEQRES 1 A 132 GLY PRO SER PHE THR SER PRO ALA VAL LYS ARG LEU LEU SEQRES 2 A 132 GLY TRP LYS GLN GLY ASP GLU GLU GLU LYS TRP ALA GLU SEQRES 3 A 132 LYS ALA VAL ASP ALA LEU VAL LYS LYS LEU LYS LYS LYS SEQRES 4 A 132 LYS GLY ALA MET GLU GLU LEU GLU LYS ALA LEU SER SER SEQRES 5 A 132 PRO GLY GLN PRO SER LYS CYS VAL THR ILE PRO ARG SER SEQRES 6 A 132 LEU ASP GLY ARG LEU GLN VAL SER HIS ARG LYS GLY LEU SEQRES 7 A 132 PRO HIS VAL ILE TYR CYS ARG VAL TRP ARG TRP PRO ASP SEQRES 8 A 132 LEU GLN SER HIS HIS GLU LEU LYS PRO LEU ASP ILE CYS SEQRES 9 A 132 GLU PHE PRO PHE GLY SER LYS GLN LYS GLU VAL CYS ILE SEQRES 10 A 132 ASN PRO TYR HIS TYR LYS ARG VAL GLU SER PRO VAL LEU SEQRES 11 A 132 PRO PRO SEQRES 1 B 132 GLY PRO SER PHE THR SER PRO ALA VAL LYS ARG LEU LEU SEQRES 2 B 132 GLY TRP LYS GLN GLY ASP GLU GLU GLU LYS TRP ALA GLU SEQRES 3 B 132 LYS ALA VAL ASP ALA LEU VAL LYS LYS LEU LYS LYS LYS SEQRES 4 B 132 LYS GLY ALA MET GLU GLU LEU GLU LYS ALA LEU SER SER SEQRES 5 B 132 PRO GLY GLN PRO SER LYS CYS VAL THR ILE PRO ARG SER SEQRES 6 B 132 LEU ASP GLY ARG LEU GLN VAL SER HIS ARG LYS GLY LEU SEQRES 7 B 132 PRO HIS VAL ILE TYR CYS ARG VAL TRP ARG TRP PRO ASP SEQRES 8 B 132 LEU GLN SER HIS HIS GLU LEU LYS PRO LEU ASP ILE CYS SEQRES 9 B 132 GLU PHE PRO PHE GLY SER LYS GLN LYS GLU VAL CYS ILE SEQRES 10 B 132 ASN PRO TYR HIS TYR LYS ARG VAL GLU SER PRO VAL LEU SEQRES 11 B 132 PRO PRO SEQRES 1 C 16 DT DG DC DA DG DG DC DG DC DG DC DC DT SEQRES 2 C 16 DG DC DA SEQRES 1 D 16 DT DG DC DA DG DG DC DG DC DG DC DC DT SEQRES 2 D 16 DG DC DA HET ZN A 201 1 HET ZN B 201 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *143(H2 O) HELIX 1 AA1 SER A 12 TRP A 21 1 10 HELIX 2 AA2 ASP A 25 LYS A 43 1 19 HELIX 3 AA3 GLY A 47 SER A 58 1 12 HELIX 4 AA4 LEU A 84 ARG A 94 1 11 HELIX 5 AA5 SER A 100 HIS A 102 5 3 HELIX 6 AA6 PRO A 113 LYS A 117 5 5 HELIX 7 AA7 ASN A 124 TYR A 126 5 3 HELIX 8 AA8 SER B 12 TRP B 21 1 10 HELIX 9 AA9 ASP B 25 LYS B 43 1 19 HELIX 10 AB1 GLY B 47 SER B 58 1 12 HELIX 11 AB2 LEU B 84 ARG B 94 1 11 HELIX 12 AB3 SER B 100 HIS B 102 5 3 HELIX 13 AB4 PRO B 113 LYS B 117 5 5 HELIX 14 AB5 ASN B 124 TYR B 126 5 3 SHEET 1 AA1 2 THR A 67 PRO A 69 0 SHEET 2 AA1 2 GLU A 120 CYS A 122 -1 O VAL A 121 N ILE A 68 SHEET 1 AA2 2 LEU A 76 VAL A 78 0 SHEET 2 AA2 2 ARG A 81 GLY A 83 -1 O GLY A 83 N LEU A 76 SHEET 1 AA3 2 LEU A 104 PRO A 106 0 SHEET 2 AA3 2 TYR A 128 ARG A 130 -1 O LYS A 129 N LYS A 105 SHEET 1 AA4 2 THR B 67 PRO B 69 0 SHEET 2 AA4 2 GLU B 120 CYS B 122 -1 O VAL B 121 N ILE B 68 SHEET 1 AA5 2 LEU B 76 VAL B 78 0 SHEET 2 AA5 2 ARG B 81 GLY B 83 -1 O GLY B 83 N LEU B 76 SHEET 1 AA6 2 LEU B 104 PRO B 106 0 SHEET 2 AA6 2 TYR B 128 ARG B 130 -1 O LYS B 129 N LYS B 105 LINK SG CYS A 65 ZN ZN A 201 1555 1555 2.39 LINK SG CYS A 110 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 122 ZN ZN A 201 1555 1555 2.31 LINK ND1 HIS A 127 ZN ZN A 201 1555 1555 1.99 LINK SG CYS B 65 ZN ZN B 201 1555 1555 2.41 LINK SG CYS B 110 ZN ZN B 201 1555 1555 2.26 LINK SG CYS B 122 ZN ZN B 201 1555 1555 2.40 LINK ND1 HIS B 127 ZN ZN B 201 1555 1555 1.93 SITE 1 AC1 4 CYS A 65 CYS A 110 CYS A 122 HIS A 127 SITE 1 AC2 4 CYS B 65 CYS B 110 CYS B 122 HIS B 127 CRYST1 67.764 73.374 89.188 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014757 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011212 0.00000