HEADER TRANSPORT PROTEIN 16-MAR-18 6G04 TITLE NMR SOLUTION STRUCTURE OF YEAST TSR2(1-152) IN COMPLEX WITH S26A(100- TITLE 2 119) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-RRNA-PROCESSING PROTEIN TSR2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 20S RRNA ACCUMULATION PROTEIN 2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 40S RIBOSOMAL PROTEIN S26-A; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: SMALL RIBOSOMAL SUBUNIT PROTEIN ES26-A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: TSR2, YLR435W; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: CODONPLUSRIL; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 13 S288C); SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: RPS26A, RPS26, YGL189C, G1355; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_VARIANT: CODONPLUSRIL KEYWDS RIBOSOME MATURATION, TRANSPORT OF RIBOSOMAL PROTEIN S26, NUCLEAR KEYWDS 2 UNLOADING FACTOR, ESCORTIN, NUCLEUS, ALPHA-HELICAL PROTEIN, KEYWDS 3 EUKARYOTIC SPECIFIC SEGMENTS, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.MICHEL,S.SCHUETZ,F.F.DAMBERGER,F.H.-T.ALLAIN,V.G.PANSE REVDAT 3 15-MAY-24 6G04 1 REMARK REVDAT 2 08-MAY-19 6G04 1 REMARK REVDAT 1 19-SEP-18 6G04 0 JRNL AUTH S.SCHUTZ,E.MICHEL,F.F.DAMBERGER,M.OPLOVA,C.PENA,A.LEITNER, JRNL AUTH 2 R.AEBERSOLD,F.H.ALLAIN,V.G.PANSE JRNL TITL MOLECULAR BASIS FOR DISASSEMBLY OF AN IMPORTIN:RIBOSOMAL JRNL TITL 2 PROTEIN COMPLEX BY THE ESCORTIN TSR2. JRNL REF NAT COMMUN V. 9 3669 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30201955 JRNL DOI 10.1038/S41467-018-06160-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009164. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.15 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 41 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] TSR2(1 REMARK 210 -152), 0.5 MM S26A(100-119), 20 REMARK 210 MM SODIUM PHOSPHATE, 1 MM [U-2H] REMARK 210 DTT, 10 UM EDTA, 95% H2O/5% D2O; REMARK 210 0.5 MM TSR2(1-152), 0.5 MM [U- REMARK 210 13C; U-15N] S26A(100-119), 20 MM REMARK 210 SODIUM PHOSPHATE, 1 MM [U-2H] REMARK 210 DTT, 10 UM EDTA, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D C(CO)NH; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 900 MHZ; 700 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, ATNOS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 7 -30.16 -131.63 REMARK 500 1 GLN A 8 -36.21 -165.00 REMARK 500 1 ILE A 10 -62.40 -156.02 REMARK 500 1 THR A 13 23.97 -148.60 REMARK 500 1 GLU A 100 -29.13 -154.40 REMARK 500 1 ASP A 108 18.25 59.88 REMARK 500 1 TYR A 129 21.65 -153.53 REMARK 500 1 THR A 145 -27.29 -154.02 REMARK 500 1 LYS A 147 -34.16 -147.49 REMARK 500 1 SER A 148 113.13 -166.09 REMARK 500 1 HIS A 153 24.57 -152.54 REMARK 500 1 GLU A 155 15.01 -152.14 REMARK 500 1 HIS B 5 168.62 59.37 REMARK 500 1 ARG B 9 -65.33 -121.75 REMARK 500 1 ARG B 12 11.70 -143.77 REMARK 500 2 GLN A 8 -64.05 -158.66 REMARK 500 2 ILE A 10 -77.55 -146.99 REMARK 500 2 THR A 13 23.48 -149.23 REMARK 500 2 GLU A 100 -32.63 -155.90 REMARK 500 2 ASP A 108 20.00 59.31 REMARK 500 2 TYR A 129 17.84 -152.65 REMARK 500 2 THR A 145 -36.74 -142.55 REMARK 500 2 SER A 148 -28.83 -146.74 REMARK 500 2 VAL A 151 37.30 -88.73 REMARK 500 2 ARG B 9 -67.94 -120.41 REMARK 500 2 ARG B 12 13.60 -142.55 REMARK 500 3 SER A 6 -11.30 -151.16 REMARK 500 3 ILE A 10 -55.10 -157.08 REMARK 500 3 THR A 13 25.89 -148.90 REMARK 500 3 GLU A 100 -27.36 -143.55 REMARK 500 3 TYR A 129 17.28 -149.12 REMARK 500 3 THR A 145 -28.91 -149.12 REMARK 500 3 HIS A 153 25.04 -152.87 REMARK 500 3 ARG B 7 107.32 -45.00 REMARK 500 3 ARG B 9 -74.43 -113.25 REMARK 500 3 ARG B 12 15.83 -144.63 REMARK 500 4 ILE A 10 -63.48 -156.03 REMARK 500 4 THR A 13 23.85 -150.10 REMARK 500 4 ASP A 108 18.65 59.57 REMARK 500 4 ASN A 126 21.76 -140.10 REMARK 500 4 ASN A 128 30.71 -84.77 REMARK 500 4 TYR A 129 16.44 -69.92 REMARK 500 4 THR A 145 -29.17 -145.77 REMARK 500 4 ILE A 154 148.07 53.50 REMARK 500 4 SER B 3 -162.49 55.58 REMARK 500 4 GLN B 4 6.75 -69.22 REMARK 500 4 HIS B 5 168.45 61.46 REMARK 500 4 ARG B 7 106.49 -42.32 REMARK 500 4 ARG B 9 -76.27 -120.14 REMARK 500 4 ARG B 12 15.48 -143.86 REMARK 500 REMARK 500 THIS ENTRY HAS 217 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34247 RELATED DB: BMRB REMARK 900 ASSIGNMENTS OF TSR2(1-152) IN ITS FREE STATE REMARK 900 RELATED ID: 6G03 RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF TSR2(1-152) IN ITS FREE STATE REMARK 900 RELATED ID: 34248 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF YEAST TSR2(1-152) IN COMPLEX WITH REMARK 900 S26A(100-119) DBREF 6G04 A 5 156 UNP Q06672 TSR2_YEAST 1 152 DBREF 6G04 B 7 26 UNP P39938 RS26A_YEAST 100 119 SEQADV 6G04 SER A 1 UNP Q06672 EXPRESSION TAG SEQADV 6G04 GLY A 2 UNP Q06672 EXPRESSION TAG SEQADV 6G04 SER A 3 UNP Q06672 EXPRESSION TAG SEQADV 6G04 HIS A 4 UNP Q06672 EXPRESSION TAG SEQADV 6G04 SER B 1 UNP P39938 EXPRESSION TAG SEQADV 6G04 GLY B 2 UNP P39938 EXPRESSION TAG SEQADV 6G04 SER B 3 UNP P39938 EXPRESSION TAG SEQADV 6G04 GLN B 4 UNP P39938 EXPRESSION TAG SEQADV 6G04 HIS B 5 UNP P39938 EXPRESSION TAG SEQADV 6G04 MET B 6 UNP P39938 EXPRESSION TAG SEQRES 1 A 156 SER GLY SER HIS MET SER THR GLN TYR ILE ASP GLU THR SEQRES 2 A 156 ALA PHE VAL GLN ALA GLU GLN GLY LYS THR ASN LEU MET SEQRES 3 A 156 PHE SER ASP GLU LYS GLN GLN ALA ARG PHE GLU LEU GLY SEQRES 4 A 156 VAL SER MET VAL ILE TYR LYS TRP ASP ALA LEU ASP VAL SEQRES 5 A 156 ALA VAL GLU ASN SER TRP GLY GLY PRO ASP SER ALA GLU SEQRES 6 A 156 LYS ARG ASP TRP ILE THR GLY ILE VAL VAL ASP LEU PHE SEQRES 7 A 156 LYS ASN GLU LYS VAL VAL ASP ALA ALA LEU ILE GLU GLU SEQRES 8 A 156 THR LEU LEU TYR ALA MET ILE ASP GLU PHE GLU THR ASN SEQRES 9 A 156 VAL GLU ASP ASP SER ALA LEU PRO ILE ALA VAL GLU VAL SEQRES 10 A 156 ILE ASN ILE TYR ASN ASP CYS PHE ASN LEU ASN TYR ASN SEQRES 11 A 156 LYS VAL GLU LYS LEU TYR LEU GLU TRP GLN GLU LYS GLN SEQRES 12 A 156 ARG THR LYS LYS SER LYS ARG VAL VAL HIS ILE GLU GLY SEQRES 1 B 26 SER GLY SER GLN HIS MET ARG PRO ARG PHE ASN ARG GLU SEQRES 2 B 26 ASN LYS VAL SER PRO ALA ASP ALA ALA LYS LYS ALA LEU HELIX 1 AA1 ASP A 29 TYR A 45 1 17 HELIX 2 AA2 TRP A 47 ASN A 56 1 10 HELIX 3 AA3 ASP A 62 GLU A 81 1 20 HELIX 4 AA4 ALA A 86 TYR A 95 1 10 HELIX 5 AA5 ALA A 110 PHE A 125 1 16 HELIX 6 AA6 TYR A 129 TRP A 139 1 11 HELIX 7 AA7 GLN A 140 LYS A 142 5 3 HELIX 8 AA8 ALA B 21 LEU B 26 1 6 SHEET 1 AA1 2 PHE A 15 GLN A 17 0 SHEET 2 AA1 2 VAL A 83 ASP A 85 -1 O VAL A 84 N VAL A 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1