HEADER VIRAL PROTEIN 20-MAR-18 6G13 TITLE C-TERMINAL DOMAIN OF MERS-COV NUCLEOCAPSID COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MIDDLE EAST RESPIRATORY SYNDROME-RELATED SOURCE 3 CORONAVIRUS; SOURCE 4 ORGANISM_TAXID: 1335626; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOCAPSID, RNA BINDING PROTEIN, MERS, CORONAVIRUS, CTD, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.V.NGUYEN,F.P.FERRON,J.LICHIERE,B.CANARD,N.PAPAGEORGIOU,B.COUTARD REVDAT 2 17-JAN-24 6G13 1 REMARK REVDAT 1 27-FEB-19 6G13 0 JRNL AUTH T.H.V.NGUYEN,J.LICHIERE,B.CANARD,N.PAPAGEORGIOU,S.ATTOUMANI, JRNL AUTH 2 F.FERRON,B.COUTARD JRNL TITL STRUCTURE AND OLIGOMERIZATION STATE OF THE C-TERMINAL REGION JRNL TITL 2 OF THE MIDDLE EAST RESPIRATORY SYNDROME CORONAVIRUS JRNL TITL 3 NUCLEOPROTEIN. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 8 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30644840 JRNL DOI 10.1107/S2059798318014948 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 2914 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1108 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2210 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1060 REMARK 3 BIN R VALUE (WORKING SET) : 0.2211 REMARK 3 BIN FREE R VALUE : 0.2193 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.33 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3624 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.17740 REMARK 3 B22 (A**2) : -5.17740 REMARK 3 B33 (A**2) : 10.35490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.122 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.115 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.119 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.114 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3806 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5177 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1310 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 643 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3806 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 453 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4436 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.36 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.09 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -43.3641 35.4192 -35.1683 REMARK 3 T TENSOR REMARK 3 T11: -0.1448 T22: 0.0778 REMARK 3 T33: -0.0849 T12: -0.0264 REMARK 3 T13: -0.0056 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.5972 L22: 1.4883 REMARK 3 L33: 4.3407 L12: 0.4366 REMARK 3 L13: 1.1418 L23: 1.0649 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.1498 S13: -0.1565 REMARK 3 S21: -0.0142 S22: 0.1440 S23: 0.0334 REMARK 3 S31: 0.0221 S32: 0.7456 S33: -0.1144 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -30.1544 43.3867 -10.6955 REMARK 3 T TENSOR REMARK 3 T11: -0.0924 T22: 0.1210 REMARK 3 T33: -0.1520 T12: -0.0798 REMARK 3 T13: -0.0245 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 3.0556 L22: 1.1909 REMARK 3 L33: 2.5776 L12: 0.8202 REMARK 3 L13: -1.3953 L23: -0.1822 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: -0.1592 S13: -0.0730 REMARK 3 S21: 0.1207 S22: 0.0885 S23: -0.1165 REMARK 3 S31: 0.1076 S32: 0.2239 S33: 0.0571 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -43.7654 27.4591 -48.7132 REMARK 3 T TENSOR REMARK 3 T11: -0.1693 T22: 0.1324 REMARK 3 T33: -0.1409 T12: 0.0447 REMARK 3 T13: -0.0085 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 1.6045 L22: 1.8610 REMARK 3 L33: 7.5778 L12: 1.1649 REMARK 3 L13: 1.9901 L23: 2.8789 REMARK 3 S TENSOR REMARK 3 S11: -0.0911 S12: 0.5332 S13: -0.2524 REMARK 3 S21: -0.0754 S22: 0.3664 S23: -0.1301 REMARK 3 S31: 0.3556 S32: 1.4622 S33: -0.2752 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -38.5674 30.8020 -6.3081 REMARK 3 T TENSOR REMARK 3 T11: 0.0367 T22: -0.0055 REMARK 3 T33: -0.1465 T12: -0.1015 REMARK 3 T13: 0.0689 T23: 0.0809 REMARK 3 L TENSOR REMARK 3 L11: 3.5826 L22: 1.6736 REMARK 3 L33: 2.8890 L12: 0.6482 REMARK 3 L13: -1.6031 L23: -0.4394 REMARK 3 S TENSOR REMARK 3 S11: -0.4339 S12: -0.1461 S13: -0.6624 REMARK 3 S21: 0.1115 S22: 0.0893 S23: -0.1537 REMARK 3 S31: 0.8008 S32: -0.0221 S33: 0.3447 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200007617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978714 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 28.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER PHENIX 1.10.1-2155 REMARK 200 STARTING MODEL: 2JW8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM NITRATE, 2.2M AMSO4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.88200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.76400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.76400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.88200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 247 REMARK 465 GLY A 248 REMARK 465 THR A 249 REMARK 465 LYS A 250 REMARK 465 LYS A 251 REMARK 465 ASP A 252 REMARK 465 ALA A 253 REMARK 465 ALA A 254 REMARK 465 ALA A 255 REMARK 465 ALA A 256 REMARK 465 LYS A 257 REMARK 465 ASN A 258 REMARK 465 LYS A 259 REMARK 465 HIS A 332 REMARK 465 HIS B 247 REMARK 465 GLY B 248 REMARK 465 THR B 249 REMARK 465 LYS B 250 REMARK 465 LYS B 251 REMARK 465 ASP B 252 REMARK 465 ALA B 253 REMARK 465 ALA B 254 REMARK 465 ALA B 255 REMARK 465 ALA B 256 REMARK 465 LYS B 257 REMARK 465 ASN B 258 REMARK 465 HIS B 332 REMARK 465 HIS C 247 REMARK 465 GLY C 248 REMARK 465 THR C 249 REMARK 465 LYS C 250 REMARK 465 LYS C 251 REMARK 465 ASP C 252 REMARK 465 ALA C 253 REMARK 465 ALA C 254 REMARK 465 ALA C 255 REMARK 465 ALA C 256 REMARK 465 LYS C 257 REMARK 465 ASN C 258 REMARK 465 HIS C 332 REMARK 465 HIS D 247 REMARK 465 GLY D 248 REMARK 465 THR D 249 REMARK 465 LYS D 250 REMARK 465 LYS D 251 REMARK 465 ASP D 252 REMARK 465 ALA D 253 REMARK 465 ALA D 254 REMARK 465 ALA D 255 REMARK 465 ALA D 256 REMARK 465 LYS D 257 REMARK 465 HIS D 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 259 CG CD CE NZ REMARK 470 LYS C 259 CG CD CE NZ REMARK 470 ASN D 258 CG OD1 ND2 REMARK 470 LYS D 259 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 279 CG - CD - NE ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG A 279 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 326 55.04 -155.93 REMARK 500 GLN A 327 -72.32 -61.92 REMARK 500 LYS D 259 -169.06 -78.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 589 DISTANCE = 14.73 ANGSTROMS REMARK 525 HOH B 586 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH C 574 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH C 575 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH C 576 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH C 577 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH C 578 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH C 579 DISTANCE = 7.92 ANGSTROMS REMARK 525 HOH C 580 DISTANCE = 8.36 ANGSTROMS REMARK 525 HOH C 581 DISTANCE = 9.73 ANGSTROMS REMARK 525 HOH C 582 DISTANCE = 11.43 ANGSTROMS REMARK 525 HOH C 583 DISTANCE = 15.59 ANGSTROMS REMARK 525 HOH D 452 DISTANCE = 14.71 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMO C 401 DBREF1 6G13 A 249 372 UNP A0A0D3MU51_9BETC DBREF2 6G13 A A0A0D3MU51 249 372 DBREF1 6G13 B 249 372 UNP A0A0D3MU51_9BETC DBREF2 6G13 B A0A0D3MU51 249 372 DBREF1 6G13 C 249 372 UNP A0A0D3MU51_9BETC DBREF2 6G13 C A0A0D3MU51 249 372 DBREF1 6G13 D 249 372 UNP A0A0D3MU51_9BETC DBREF2 6G13 D A0A0D3MU51 249 372 SEQADV 6G13 HIS A 247 UNP A0A0D3MU5 EXPRESSION TAG SEQADV 6G13 GLY A 248 UNP A0A0D3MU5 EXPRESSION TAG SEQADV 6G13 HIS B 247 UNP A0A0D3MU5 EXPRESSION TAG SEQADV 6G13 GLY B 248 UNP A0A0D3MU5 EXPRESSION TAG SEQADV 6G13 HIS C 247 UNP A0A0D3MU5 EXPRESSION TAG SEQADV 6G13 GLY C 248 UNP A0A0D3MU5 EXPRESSION TAG SEQADV 6G13 HIS D 247 UNP A0A0D3MU5 EXPRESSION TAG SEQADV 6G13 GLY D 248 UNP A0A0D3MU5 EXPRESSION TAG SEQRES 1 A 126 HIS GLY THR LYS LYS ASP ALA ALA ALA ALA LYS ASN LYS SEQRES 2 A 126 MET ARG HIS LYS ARG THR SER THR LYS SER PHE ASN MET SEQRES 3 A 126 VAL GLN ALA PHE GLY LEU ARG GLY PRO GLY ASP LEU GLN SEQRES 4 A 126 GLY ASN PHE GLY ASP LEU GLN LEU ASN LYS LEU GLY THR SEQRES 5 A 126 GLU ASP PRO ARG TRP PRO GLN ILE ALA GLU LEU ALA PRO SEQRES 6 A 126 THR ALA SER ALA PHE MET GLY MET SER GLN PHE LYS LEU SEQRES 7 A 126 THR HIS GLN ASN ASN ASP ASP HIS GLY ASN PRO VAL TYR SEQRES 8 A 126 PHE LEU ARG TYR SER GLY ALA ILE LYS LEU ASP PRO LYS SEQRES 9 A 126 ASN PRO ASN TYR ASN LYS TRP LEU GLU LEU LEU GLU GLN SEQRES 10 A 126 ASN ILE ASP ALA TYR LYS THR PHE PRO SEQRES 1 B 126 HIS GLY THR LYS LYS ASP ALA ALA ALA ALA LYS ASN LYS SEQRES 2 B 126 MET ARG HIS LYS ARG THR SER THR LYS SER PHE ASN MET SEQRES 3 B 126 VAL GLN ALA PHE GLY LEU ARG GLY PRO GLY ASP LEU GLN SEQRES 4 B 126 GLY ASN PHE GLY ASP LEU GLN LEU ASN LYS LEU GLY THR SEQRES 5 B 126 GLU ASP PRO ARG TRP PRO GLN ILE ALA GLU LEU ALA PRO SEQRES 6 B 126 THR ALA SER ALA PHE MET GLY MET SER GLN PHE LYS LEU SEQRES 7 B 126 THR HIS GLN ASN ASN ASP ASP HIS GLY ASN PRO VAL TYR SEQRES 8 B 126 PHE LEU ARG TYR SER GLY ALA ILE LYS LEU ASP PRO LYS SEQRES 9 B 126 ASN PRO ASN TYR ASN LYS TRP LEU GLU LEU LEU GLU GLN SEQRES 10 B 126 ASN ILE ASP ALA TYR LYS THR PHE PRO SEQRES 1 C 126 HIS GLY THR LYS LYS ASP ALA ALA ALA ALA LYS ASN LYS SEQRES 2 C 126 MET ARG HIS LYS ARG THR SER THR LYS SER PHE ASN MET SEQRES 3 C 126 VAL GLN ALA PHE GLY LEU ARG GLY PRO GLY ASP LEU GLN SEQRES 4 C 126 GLY ASN PHE GLY ASP LEU GLN LEU ASN LYS LEU GLY THR SEQRES 5 C 126 GLU ASP PRO ARG TRP PRO GLN ILE ALA GLU LEU ALA PRO SEQRES 6 C 126 THR ALA SER ALA PHE MET GLY MET SER GLN PHE LYS LEU SEQRES 7 C 126 THR HIS GLN ASN ASN ASP ASP HIS GLY ASN PRO VAL TYR SEQRES 8 C 126 PHE LEU ARG TYR SER GLY ALA ILE LYS LEU ASP PRO LYS SEQRES 9 C 126 ASN PRO ASN TYR ASN LYS TRP LEU GLU LEU LEU GLU GLN SEQRES 10 C 126 ASN ILE ASP ALA TYR LYS THR PHE PRO SEQRES 1 D 126 HIS GLY THR LYS LYS ASP ALA ALA ALA ALA LYS ASN LYS SEQRES 2 D 126 MET ARG HIS LYS ARG THR SER THR LYS SER PHE ASN MET SEQRES 3 D 126 VAL GLN ALA PHE GLY LEU ARG GLY PRO GLY ASP LEU GLN SEQRES 4 D 126 GLY ASN PHE GLY ASP LEU GLN LEU ASN LYS LEU GLY THR SEQRES 5 D 126 GLU ASP PRO ARG TRP PRO GLN ILE ALA GLU LEU ALA PRO SEQRES 6 D 126 THR ALA SER ALA PHE MET GLY MET SER GLN PHE LYS LEU SEQRES 7 D 126 THR HIS GLN ASN ASN ASP ASP HIS GLY ASN PRO VAL TYR SEQRES 8 D 126 PHE LEU ARG TYR SER GLY ALA ILE LYS LEU ASP PRO LYS SEQRES 9 D 126 ASN PRO ASN TYR ASN LYS TRP LEU GLU LEU LEU GLU GLN SEQRES 10 D 126 ASN ILE ASP ALA TYR LYS THR PHE PRO HET TMO A 401 14 HET TMO A 402 14 HET PEG A 403 17 HET TMO B 401 14 HET CL B 402 1 HET TMO C 401 14 HETNAM TMO TRIMETHYLAMINE OXIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION FORMUL 5 TMO 4(C3 H9 N O) FORMUL 7 PEG C4 H10 O3 FORMUL 9 CL CL 1- FORMUL 11 HOH *310(H2 O) HELIX 1 AA1 MET A 260 ARG A 264 5 5 HELIX 2 AA2 ASN A 271 GLY A 277 1 7 HELIX 3 AA3 ASP A 290 GLY A 297 1 8 HELIX 4 AA4 THR A 298 ASP A 300 5 3 HELIX 5 AA5 ARG A 302 ALA A 307 1 6 HELIX 6 AA6 GLU A 308 ALA A 310 5 3 HELIX 7 AA7 THR A 312 SER A 320 1 9 HELIX 8 AA8 ASN A 353 ILE A 365 1 13 HELIX 9 AA9 ASP A 366 PHE A 371 5 6 HELIX 10 AB1 MET B 260 ARG B 264 5 5 HELIX 11 AB2 ASN B 271 GLY B 277 1 7 HELIX 12 AB3 ASP B 290 GLY B 297 1 8 HELIX 13 AB4 THR B 298 ASP B 300 5 3 HELIX 14 AB5 ARG B 302 ALA B 307 1 6 HELIX 15 AB6 GLU B 308 ALA B 310 5 3 HELIX 16 AB7 THR B 312 SER B 320 1 9 HELIX 17 AB8 ASN B 353 ILE B 365 1 13 HELIX 18 AB9 ASP B 366 PHE B 371 5 6 HELIX 19 AC1 MET C 260 ARG C 264 5 5 HELIX 20 AC2 ASN C 271 GLY C 277 1 7 HELIX 21 AC3 ASP C 290 GLY C 297 1 8 HELIX 22 AC4 THR C 298 ASP C 300 5 3 HELIX 23 AC5 ARG C 302 ALA C 307 1 6 HELIX 24 AC6 GLU C 308 ALA C 310 5 3 HELIX 25 AC7 THR C 312 SER C 320 1 9 HELIX 26 AC8 ASN C 353 ILE C 365 1 13 HELIX 27 AC9 ASP C 366 PHE C 371 5 6 HELIX 28 AD1 MET D 260 ARG D 264 5 5 HELIX 29 AD2 ASN D 271 GLY D 277 1 7 HELIX 30 AD3 ASP D 290 GLY D 297 1 8 HELIX 31 AD4 THR D 298 ASP D 300 5 3 HELIX 32 AD5 ARG D 302 ALA D 307 1 6 HELIX 33 AD6 GLU D 308 ALA D 310 5 3 HELIX 34 AD7 THR D 312 SER D 320 1 9 HELIX 35 AD8 ASN D 353 ILE D 365 1 13 HELIX 36 AD9 ASP D 366 PHE D 371 5 6 SHEET 1 AA1 4 GLN A 321 THR A 325 0 SHEET 2 AA1 4 PHE A 338 LEU A 347 -1 O SER A 342 N GLN A 321 SHEET 3 AA1 4 ASN C 334 LYS C 346 -1 O TYR C 337 N LEU A 347 SHEET 4 AA1 4 GLN C 321 ASP C 330 -1 N LYS C 323 O ARG C 340 SHEET 1 AA2 4 GLN B 321 GLN B 327 0 SHEET 2 AA2 4 VAL B 336 LYS B 346 -1 O SER B 342 N GLN B 321 SHEET 3 AA2 4 ASN D 334 LEU D 347 -1 O ILE D 345 N LEU B 339 SHEET 4 AA2 4 GLN D 321 ASP D 330 -1 N LYS D 323 O ARG D 340 SITE 1 AC1 7 LYS A 295 HOH A 579 LYS B 259 ARG B 264 SITE 2 AC1 7 THR B 265 HOH B 508 HOH B 518 SITE 1 AC2 6 ARG A 264 THR A 265 PHE A 270 HOH A 503 SITE 2 AC2 6 LYS B 295 HOH B 565 SITE 1 AC3 6 ARG A 261 ARG A 264 VAL A 273 GLN A 274 SITE 2 AC3 6 GLY A 277 HOH A 557 SITE 1 AC4 2 ARG B 261 ARG B 264 SITE 1 AC5 2 ASP B 290 HOH B 555 SITE 1 AC6 1 ARG C 264 CRYST1 120.680 120.680 92.646 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008286 0.004784 0.000000 0.00000 SCALE2 0.000000 0.009568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010794 0.00000