HEADER HYDROLASE 21-MAR-18 6G1I TITLE GH124 CELLULASE FROM RUMINICLOSTRIDIUM THERMOCELLUM IN COMPLEX WITH MN TITLE 2 AND FRUCTOSYLATED CELLOPENTAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 131-350.; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM (STRAIN ATCC 27405 / SOURCE 3 DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372); SOURCE 4 ORGANISM_COMMON: RUMINICLOSTRIDIUM THERMOCELLUM; SOURCE 5 ORGANISM_TAXID: 203119; SOURCE 6 GENE: CTHE_0435; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METAL BINDING, 2-OXOHISTIDINE, CELLULASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.URRESTI,G.J.DAVIES,P.H.WALTON REVDAT 4 17-JAN-24 6G1I 1 HETSYN LINK REVDAT 3 29-JUL-20 6G1I 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 19-DEC-18 6G1I 1 LINK REVDAT 1 15-AUG-18 6G1I 0 JRNL AUTH S.URRESTI,A.CARTMELL,F.LIU,P.H.WALTON,G.J.DAVIES JRNL TITL STRUCTURAL STUDIES OF THE UNUSUAL METAL-ION SITE OF THE JRNL TITL 2 GH124 ENDOGLUCANASE FROM RUMINICLOSTRIDIUM THERMOCELLUM. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 496 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 30084399 JRNL DOI 10.1107/S2053230X18006842 REMARK 2 REMARK 2 RESOLUTION. 0.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 204772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 10962 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10031 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 586 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 196 REMARK 3 SOLVENT ATOMS : 461 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.04000 REMARK 3 B22 (A**2) : 1.38000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.022 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.802 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3938 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3380 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5412 ; 1.887 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7858 ; 1.132 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 5.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;33.624 ;23.088 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;11.888 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.961 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4361 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 892 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1755 ; 1.085 ; 1.013 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1756 ; 1.090 ; 1.015 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2205 ; 1.406 ; 1.530 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2205 ; 1.406 ; 1.530 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2183 ; 3.903 ; 1.211 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2176 ; 3.902 ; 1.208 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3175 ; 4.844 ; 1.762 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4825 ; 5.023 ;13.403 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4711 ; 4.876 ;13.115 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7266 ; 3.830 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 270 ;22.973 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7304 ;12.438 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 215828 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.990 REMARK 200 RESOLUTION RANGE LOW (A) : 74.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2XQO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TACSIMATE, PEG 3350, MANGANESE (II) REMARK 280 ACETATE, PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.57000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.66400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.08650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.66400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.57000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.08650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 128 REMARK 465 PRO A 129 REMARK 465 ALA A 130 REMARK 465 PRO A 131 REMARK 465 ALA A 132 REMARK 465 ASN A 133 REMARK 465 THR A 134 REMARK 465 GLN A 135 REMARK 465 SER A 136 REMARK 465 GLY A 137 REMARK 465 ILE A 138 REMARK 465 LEU A 139 REMARK 465 ASN A 140 REMARK 465 GLY B 128 REMARK 465 PRO B 129 REMARK 465 ALA B 130 REMARK 465 PRO B 131 REMARK 465 ALA B 132 REMARK 465 ASN B 133 REMARK 465 THR B 134 REMARK 465 GLN B 135 REMARK 465 SER B 136 REMARK 465 GLY B 137 REMARK 465 ILE B 138 REMARK 465 LEU B 139 REMARK 465 ASN B 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 175 CD GLU A 175 OE2 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 323 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 309 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 309 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 309 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 204 -1.44 -141.32 REMARK 500 ALA A 233 -146.30 -96.61 REMARK 500 TYR A 310 -64.39 -108.82 REMARK 500 THR A 333 -168.41 -113.87 REMARK 500 SER B 204 -2.96 -140.58 REMARK 500 ALA B 233 -144.91 -97.95 REMARK 500 TYR B 310 -67.06 -104.12 REMARK 500 THR B 333 -165.70 -109.51 REMARK 500 ASN B 344 75.20 -150.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 181 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 740 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 741 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 742 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A 743 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 744 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B 713 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 714 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B 715 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B 716 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B 717 DISTANCE = 6.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 409 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD1 REMARK 620 2 GLN A 172 OE1 97.9 REMARK 620 3 GLU A 175 OE2 88.6 95.7 REMARK 620 4 HIS A 176 NE2 167.5 92.9 84.0 REMARK 620 5 OHI A 264 ND1 92.3 90.9 173.1 93.8 REMARK 620 6 HOH A 513 O 80.8 178.6 84.7 88.5 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 409 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 141 OD1 REMARK 620 2 GLN B 172 OE1 93.3 REMARK 620 3 GLU B 175 OE1 90.9 95.2 REMARK 620 4 HIS B 176 NE2 169.8 94.8 82.2 REMARK 620 5 OHI B 264 ND1 92.5 93.1 170.9 93.3 REMARK 620 6 HOH B 509 O 83.5 176.7 84.1 88.3 87.9 REMARK 620 N 1 2 3 4 5 DBREF 6G1I A 130 350 UNP A3DCJ4 A3DCJ4_CLOTH 130 350 DBREF 6G1I B 130 350 UNP A3DCJ4 A3DCJ4_CLOTH 130 350 SEQADV 6G1I GLY A 128 UNP A3DCJ4 EXPRESSION TAG SEQADV 6G1I PRO A 129 UNP A3DCJ4 EXPRESSION TAG SEQADV 6G1I GLY B 128 UNP A3DCJ4 EXPRESSION TAG SEQADV 6G1I PRO B 129 UNP A3DCJ4 EXPRESSION TAG SEQRES 1 A 223 GLY PRO ALA PRO ALA ASN THR GLN SER GLY ILE LEU ASN SEQRES 2 A 223 ASP GLY TYR PHE PRO PRO GLY THR SER LYS HIS GLU LEU SEQRES 3 A 223 ILE ALA ARG ALA SER SER LEU LYS VAL SER GLU VAL LYS SEQRES 4 A 223 ALA ILE ILE LYS LYS GLN VAL ASP GLU HIS TRP ASP VAL SEQRES 5 A 223 ILE ARG ASP VAL CYS GLY PHE LYS ASN LYS GLU VAL ALA SEQRES 6 A 223 TYR ALA PHE PHE PHE GLY MET ALA THR ARG GLU SER THR SEQRES 7 A 223 PHE ARG ALA ALA THR GLU THR GLY SER GLY ALA SER HIS SEQRES 8 A 223 ALA PHE GLY PRO LEU GLN THR ALA GLU THR ALA TYR ALA SEQRES 9 A 223 ASN ALA ASN PRO ASN TYR MET PRO GLU HIS ASN VAL PRO SEQRES 10 A 223 GLU MET HIS GLN TYR ASP PHE THR GLU TYR ASN PHE TYR SEQRES 11 A 223 ASP VAL GLY ILE SER VAL OHI MET GLY ILE ARG HIS PHE SEQRES 12 A 223 LEU HIS PHE ALA ARG LEU ALA LYS GLU LYS TYR SER GLY SEQRES 13 A 223 ARG ASP ILE ALA ARG HIS GLY LEU MET GLY TYR ASN THR SEQRES 14 A 223 GLY TRP ILE ASP GLY ALA ASP GLU SER TRP ILE VAL ARG SEQRES 15 A 223 TYR ALA ASP GLU THR ALA ALA LEU GLY ALA TRP TYR LEU SEQRES 16 A 223 ARG ASN ASN HIS MET SER ASP ASP GLU PHE THR TRP ASP SEQRES 17 A 223 THR ASP PRO ARG VAL ASP ARG SER ASN PRO TRP GLU ILE SEQRES 18 A 223 TYR TYR SEQRES 1 B 223 GLY PRO ALA PRO ALA ASN THR GLN SER GLY ILE LEU ASN SEQRES 2 B 223 ASP GLY TYR PHE PRO PRO GLY THR SER LYS HIS GLU LEU SEQRES 3 B 223 ILE ALA ARG ALA SER SER LEU LYS VAL SER GLU VAL LYS SEQRES 4 B 223 ALA ILE ILE LYS LYS GLN VAL ASP GLU HIS TRP ASP VAL SEQRES 5 B 223 ILE ARG ASP VAL CYS GLY PHE LYS ASN LYS GLU VAL ALA SEQRES 6 B 223 TYR ALA PHE PHE PHE GLY MET ALA THR ARG GLU SER THR SEQRES 7 B 223 PHE ARG ALA ALA THR GLU THR GLY SER GLY ALA SER HIS SEQRES 8 B 223 ALA PHE GLY PRO LEU GLN THR ALA GLU THR ALA TYR ALA SEQRES 9 B 223 ASN ALA ASN PRO ASN TYR MET PRO GLU HIS ASN VAL PRO SEQRES 10 B 223 GLU MET HIS GLN TYR ASP PHE THR GLU TYR ASN PHE TYR SEQRES 11 B 223 ASP VAL GLY ILE SER VAL OHI MET GLY ILE ARG HIS PHE SEQRES 12 B 223 LEU HIS PHE ALA ARG LEU ALA LYS GLU LYS TYR SER GLY SEQRES 13 B 223 ARG ASP ILE ALA ARG HIS GLY LEU MET GLY TYR ASN THR SEQRES 14 B 223 GLY TRP ILE ASP GLY ALA ASP GLU SER TRP ILE VAL ARG SEQRES 15 B 223 TYR ALA ASP GLU THR ALA ALA LEU GLY ALA TRP TYR LEU SEQRES 16 B 223 ARG ASN ASN HIS MET SER ASP ASP GLU PHE THR TRP ASP SEQRES 17 B 223 THR ASP PRO ARG VAL ASP ARG SER ASN PRO TRP GLU ILE SEQRES 18 B 223 TYR TYR MODRES 6G1I OHI A 264 HIS MODIFIED RESIDUE MODRES 6G1I OHI B 264 HIS MODIFIED RESIDUE HET OHI A 264 11 HET OHI B 264 11 HET FRU C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET BGC C 4 11 HET BGC D 1 12 HET BGC D 2 11 HET BGC D 3 11 HET BGC D 4 11 HET FRU E 1 12 HET BGC E 2 11 HET BGC E 3 11 HET BGC E 4 11 HET BGC F 1 12 HET BGC F 2 11 HET BGC F 3 11 HET BGC F 4 11 HET MN A 409 1 HET MLA A 410 7 HET MN B 409 1 HET MLA B 410 7 HETNAM OHI 3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANINE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM MLA MALONIC ACID HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 1 OHI 2(C6 H7 N3 O3) FORMUL 3 FRU 2(C6 H12 O6) FORMUL 3 BGC 14(C6 H12 O6) FORMUL 7 MN 2(MN 2+) FORMUL 8 MLA 2(C3 H4 O4) FORMUL 11 HOH *461(H2 O) HELIX 1 AA1 SER A 149 LEU A 160 1 12 HELIX 2 AA2 LYS A 161 GLY A 185 1 25 HELIX 3 AA3 ASN A 188 THR A 205 1 18 HELIX 4 AA4 SER A 214 SER A 217 5 4 HELIX 5 AA5 THR A 228 TYR A 230 5 3 HELIX 6 AA6 THR A 252 ASP A 258 1 7 HELIX 7 AA7 ASP A 258 GLU A 279 1 22 HELIX 8 AA8 GLY A 283 GLY A 297 1 15 HELIX 9 AA9 ASP A 303 ASN A 324 1 22 HELIX 10 AB1 TRP A 346 TYR A 350 5 5 HELIX 11 AB2 SER B 149 LEU B 160 1 12 HELIX 12 AB3 LYS B 161 HIS B 176 1 16 HELIX 13 AB4 HIS B 176 GLY B 185 1 10 HELIX 14 AB5 ASN B 188 THR B 205 1 18 HELIX 15 AB6 SER B 214 SER B 217 5 4 HELIX 16 AB7 THR B 228 TYR B 230 5 3 HELIX 17 AB8 THR B 252 ASP B 258 1 7 HELIX 18 AB9 ASP B 258 GLU B 279 1 22 HELIX 19 AC1 GLY B 283 GLY B 297 1 15 HELIX 20 AC2 ASP B 303 ASN B 324 1 22 HELIX 21 AC3 TRP B 346 TYR B 350 5 5 SHEET 1 AA1 3 GLU A 211 THR A 212 0 SHEET 2 AA1 3 ALA A 219 PHE A 220 -1 O ALA A 219 N THR A 212 SHEET 3 AA1 3 THR A 225 ALA A 226 -1 O THR A 225 N PHE A 220 SHEET 1 AA2 3 GLU B 211 THR B 212 0 SHEET 2 AA2 3 ALA B 219 PHE B 220 -1 O ALA B 219 N THR B 212 SHEET 3 AA2 3 THR B 225 ALA B 226 -1 O THR B 225 N PHE B 220 LINK C VAL A 263 N OHI A 264 1555 1555 1.35 LINK C OHI A 264 N MET A 265 1555 1555 1.37 LINK C VAL B 263 N OHI B 264 1555 1555 1.34 LINK C OHI B 264 N MET B 265 1555 1555 1.32 LINK O4 FRU C 1 C1 BGC C 2 1555 1555 1.41 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.39 LINK O4 BGC C 3 C1 BGC C 4 1555 1555 1.43 LINK O4 BGC D 1 C1 BGC D 2 1555 1555 1.40 LINK O4 BGC D 2 C1 BGC D 3 1555 1555 1.41 LINK O4 BGC D 3 C1 BGC D 4 1555 1555 1.41 LINK O4 FRU E 1 C1 BGC E 2 1555 1555 1.41 LINK O4 BGC E 2 C1 BGC E 3 1555 1555 1.38 LINK O4 BGC E 3 C1 BGC E 4 1555 1555 1.44 LINK O4 BGC F 1 C1 BGC F 2 1555 1555 1.37 LINK O4 BGC F 2 C1 BGC F 3 1555 1555 1.40 LINK O4 BGC F 3 C1 BGC F 4 1555 1555 1.40 LINK OD1 ASP A 141 MN MN A 409 1555 1555 2.18 LINK OE1 GLN A 172 MN MN A 409 1555 1555 2.09 LINK OE2BGLU A 175 MN MN A 409 1555 1555 2.16 LINK NE2 HIS A 176 MN MN A 409 1555 1555 2.26 LINK ND1 OHI A 264 MN MN A 409 1555 1555 2.26 LINK MN MN A 409 O HOH A 513 1555 1555 2.31 LINK OD1 ASP B 141 MN MN B 409 1555 1555 2.15 LINK OE1 GLN B 172 MN MN B 409 1555 1555 2.16 LINK OE1 GLU B 175 MN MN B 409 1555 1555 2.21 LINK NE2 HIS B 176 MN MN B 409 1555 1555 2.19 LINK ND1 OHI B 264 MN MN B 409 1555 1555 2.23 LINK MN MN B 409 O HOH B 509 1555 1555 2.31 CRYST1 71.140 74.173 77.328 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014057 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012932 0.00000