HEADER TRANSFERASE 24-MAR-18 6G34 TITLE CRYSTAL STRUCTURE OF HASPIN IN COMPLEX WITH 5-IODOTUBERCIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE HASPIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GERM CELL-SPECIFIC GENE 2 PROTEIN,H-HASPIN,HAPLOID GERM COMPND 5 CELL-SPECIFIC NUCLEAR PROTEIN KINASE; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HASPIN, GSG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, INHIBITORS, SLOW OFF-RATE, KINETICS, HALOGEN, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.HEROVEN,A.CHAIKUAD,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,S.KNAPP, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 17-JAN-24 6G34 1 REMARK REVDAT 3 13-JUN-18 6G34 1 JRNL REVDAT 2 16-MAY-18 6G34 1 JRNL REVDAT 1 18-APR-18 6G34 0 JRNL AUTH C.HEROVEN,V.GEORGI,G.K.GANOTRA,P.BRENNAN,F.WOLFREYS, JRNL AUTH 2 R.C.WADE,A.E.FERNANDEZ-MONTALVAN,A.CHAIKUAD,S.KNAPP JRNL TITL HALOGEN-AROMATIC PI INTERACTIONS MODULATE INHIBITOR JRNL TITL 2 RESIDENCE TIMES. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 7220 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29601130 JRNL DOI 10.1002/ANIE.201801666 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 46249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2373 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3385 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.1160 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.1630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.762 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2705 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2550 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3667 ; 1.750 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5885 ; 1.022 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 6.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;34.903 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 471 ;12.002 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.734 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3067 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 623 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1314 ; 1.547 ; 1.131 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1312 ; 1.551 ;90.557 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1641 ; 1.872 ; 1.692 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1642 ; 1.871 ; 1.692 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1391 ; 2.116 ; 3.686 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1387 ; 2.096 ; 3.688 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2018 ; 2.369 ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3189 ; 2.501 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3190 ; 2.504 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2664 ; 5.783 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 1 ; 8.303 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2604 ; 6.771 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5922 15.8429 4.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0214 REMARK 3 T33: 0.0172 T12: -0.0018 REMARK 3 T13: 0.0098 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.4223 L22: 0.6990 REMARK 3 L33: 1.1996 L12: 0.2510 REMARK 3 L13: -1.0826 L23: -0.0724 REMARK 3 S TENSOR REMARK 3 S11: -0.0379 S12: 0.0548 S13: 0.0983 REMARK 3 S21: -0.0522 S22: 0.0716 S23: -0.0700 REMARK 3 S31: -0.0382 S32: 0.0526 S33: -0.0337 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1634 0.4986 16.6971 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0088 REMARK 3 T33: 0.0150 T12: 0.0005 REMARK 3 T13: -0.0005 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 2.1534 L22: 2.5406 REMARK 3 L33: 1.5905 L12: 0.6826 REMARK 3 L13: 0.3330 L23: -0.4631 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: -0.0795 S13: -0.1246 REMARK 3 S21: 0.1337 S22: -0.0143 S23: -0.0241 REMARK 3 S31: 0.1166 S32: -0.0059 S33: -0.0195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48665 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 23.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.22400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 51-63% MPD AND 0.1M SPG BUFFER, PH 6.0 REMARK 280 -6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.29000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.86500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.86500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 TYR A 19 REMARK 465 PHE A 20 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 MET A 23 REMARK 465 GLY A 24 REMARK 465 GLU A 25 REMARK 465 CYS A 26 REMARK 465 SER A 27 REMARK 465 GLN A 28 REMARK 465 LYS A 29 REMARK 465 GLY A 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 134 CE NZ REMARK 470 LYS A 143 CE NZ REMARK 470 LYS A 218 CD CE NZ REMARK 470 LYS A 222 CD CE NZ REMARK 470 LYS A 231 CD CE NZ REMARK 470 GLU A 267 CB CG CD OE1 OE2 REMARK 470 LYS A 327 CD CE NZ REMARK 470 GLN A 328 CG CD OE1 NE2 REMARK 470 ARG A 331 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 504 O HOH A 506 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 275 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 GLU A 335 OE1 - CD - OE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 75 -4.75 73.03 REMARK 500 ARG A 207 -2.30 70.63 REMARK 500 ASP A 208 46.52 -151.34 REMARK 500 LEU A 209 55.59 -90.78 REMARK 500 ASP A 246 93.11 74.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5ID A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 DBREF 6G34 A 24 357 UNP Q8TF76 HASP_HUMAN 465 798 SEQADV 6G34 MET A 1 UNP Q8TF76 INITIATING METHIONINE SEQADV 6G34 HIS A 2 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 HIS A 3 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 HIS A 4 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 HIS A 5 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 HIS A 6 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 HIS A 7 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 SER A 8 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 SER A 9 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 GLY A 10 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 VAL A 11 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 ASP A 12 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 LEU A 13 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 GLY A 14 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 THR A 15 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 GLU A 16 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 ASN A 17 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 LEU A 18 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 TYR A 19 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 PHE A 20 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 GLN A 21 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 SER A 22 UNP Q8TF76 EXPRESSION TAG SEQADV 6G34 MET A 23 UNP Q8TF76 EXPRESSION TAG SEQRES 1 A 357 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 357 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY GLU CYS SEQRES 3 A 357 SER GLN LYS GLY PRO VAL PRO PHE SER HIS CYS LEU PRO SEQRES 4 A 357 THR GLU LYS LEU GLN ARG CYS GLU LYS ILE GLY GLU GLY SEQRES 5 A 357 VAL PHE GLY GLU VAL PHE GLN THR ILE ALA ASP HIS THR SEQRES 6 A 357 PRO VAL ALA ILE LYS ILE ILE ALA ILE GLU GLY PRO ASP SEQRES 7 A 357 LEU VAL ASN GLY SER HIS GLN LYS THR PHE GLU GLU ILE SEQRES 8 A 357 LEU PRO GLU ILE ILE ILE SER LYS GLU LEU SER LEU LEU SEQRES 9 A 357 SER GLY GLU VAL CYS ASN ARG THR GLU GLY PHE ILE GLY SEQRES 10 A 357 LEU ASN SER VAL HIS CYS VAL GLN GLY SER TYR PRO PRO SEQRES 11 A 357 LEU LEU LEU LYS ALA TRP ASP HIS TYR ASN SER THR LYS SEQRES 12 A 357 GLY SER ALA ASN ASP ARG PRO ASP PHE PHE LYS ASP ASP SEQRES 13 A 357 GLN LEU PHE ILE VAL LEU GLU PHE GLU PHE GLY GLY ILE SEQRES 14 A 357 ASP LEU GLU GLN MET ARG THR LYS LEU SER SER LEU ALA SEQRES 15 A 357 THR ALA LYS SER ILE LEU HIS GLN LEU THR ALA SER LEU SEQRES 16 A 357 ALA VAL ALA GLU ALA SER LEU ARG PHE GLU HIS ARG ASP SEQRES 17 A 357 LEU HIS TRP GLY ASN VAL LEU LEU LYS LYS THR SER LEU SEQRES 18 A 357 LYS LYS LEU HIS TYR THR LEU ASN GLY LYS SER SER THR SEQRES 19 A 357 ILE PRO SER CYS GLY LEU GLN VAL SER ILE ILE ASP TYR SEQRES 20 A 357 THR LEU SER ARG LEU GLU ARG ASP GLY ILE VAL VAL PHE SEQRES 21 A 357 CYS ASP VAL SER MET ASP GLU ASP LEU PHE THR GLY ASP SEQRES 22 A 357 GLY ASP TYR GLN PHE ASP ILE TYR ARG LEU MET LYS LYS SEQRES 23 A 357 GLU ASN ASN ASN ARG TRP GLY GLU TYR HIS PRO TYR SER SEQRES 24 A 357 ASN VAL LEU TRP LEU HIS TYR LEU THR ASP LYS MET LEU SEQRES 25 A 357 LYS GLN MET THR PHE LYS THR LYS CYS ASN THR PRO ALA SEQRES 26 A 357 MET LYS GLN ILE LYS ARG LYS ILE GLN GLU PHE HIS ARG SEQRES 27 A 357 THR MET LEU ASN PHE SER SER ALA THR ASP LEU LEU CYS SEQRES 28 A 357 GLN HIS SER LEU PHE LYS HET 5ID A 401 20 HET IOD A 402 1 HET EPE A 403 15 HET PO4 A 404 5 HETNAM 5ID (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3- HETNAM 2 5ID D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3, HETNAM 3 5ID 4-DIOL HETNAM IOD IODIDE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PO4 PHOSPHATE ION HETSYN 5ID 5-IODOTUBERCIDIN HETSYN EPE HEPES FORMUL 2 5ID C11 H13 I N4 O4 FORMUL 3 IOD I 1- FORMUL 4 EPE C8 H18 N2 O4 S FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *229(H2 O) HELIX 1 AA1 PRO A 33 LEU A 38 1 6 HELIX 2 AA2 PRO A 39 ARG A 45 1 7 HELIX 3 AA3 THR A 87 LEU A 104 1 18 HELIX 4 AA4 SER A 105 GLU A 107 5 3 HELIX 5 AA5 PRO A 129 LYS A 143 1 15 HELIX 6 AA6 SER A 180 ARG A 203 1 24 HELIX 7 AA7 HIS A 210 GLY A 212 5 3 HELIX 8 AA8 GLU A 267 THR A 271 5 5 HELIX 9 AA9 ASP A 275 ASN A 289 1 15 HELIX 10 AB1 PRO A 297 GLN A 314 1 18 HELIX 11 AB2 THR A 323 MET A 340 1 18 HELIX 12 AB3 LEU A 341 PHE A 343 5 3 HELIX 13 AB4 SER A 345 HIS A 353 1 9 HELIX 14 AB5 SER A 354 LYS A 357 5 4 SHEET 1 AA1 5 GLU A 47 GLY A 52 0 SHEET 2 AA1 5 GLY A 55 ALA A 62 -1 O GLN A 59 N GLU A 47 SHEET 3 AA1 5 THR A 65 ILE A 74 -1 O ILE A 69 N PHE A 58 SHEET 4 AA1 5 LEU A 158 GLU A 165 -1 O PHE A 164 N ALA A 68 SHEET 5 AA1 5 LEU A 118 GLN A 125 -1 N HIS A 122 O VAL A 161 SHEET 1 AA2 2 LEU A 79 VAL A 80 0 SHEET 2 AA2 2 SER A 83 HIS A 84 -1 O SER A 83 N VAL A 80 SHEET 1 AA3 3 ILE A 169 ASP A 170 0 SHEET 2 AA3 3 VAL A 214 LYS A 218 -1 O LEU A 216 N ILE A 169 SHEET 3 AA3 3 LEU A 240 ILE A 244 -1 O GLN A 241 N LYS A 217 SHEET 1 AA4 2 LYS A 223 LEU A 228 0 SHEET 2 AA4 2 LYS A 231 PRO A 236 -1 O LYS A 231 N LEU A 228 SHEET 1 AA5 2 LEU A 252 ARG A 254 0 SHEET 2 AA5 2 ILE A 257 VAL A 259 -1 O VAL A 259 N LEU A 252 SITE 1 AC1 17 ILE A 49 GLY A 50 ALA A 68 PHE A 164 SITE 2 AC1 17 GLU A 165 PHE A 166 GLY A 167 GLY A 168 SITE 3 AC1 17 ASP A 170 GLY A 212 LEU A 215 ILE A 245 SITE 4 AC1 17 IOD A 402 HOH A 512 HOH A 535 HOH A 571 SITE 5 AC1 17 HOH A 640 SITE 1 AC2 2 LYS A 70 5ID A 401 SITE 1 AC3 6 GLU A 287 ASN A 289 HIS A 296 LEU A 341 SITE 2 AC3 6 ASN A 342 PHE A 343 SITE 1 AC4 5 ILE A 96 PRO A 130 ARG A 254 ILE A 257 SITE 2 AC4 5 HOH A 656 CRYST1 78.580 78.740 79.730 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012542 0.00000