HEADER TRANSFERASE 24-MAR-18 6G3A TITLE CRYSTAL STRUCTURE OF HASPIN F605T MUTANT IN COMPLEX WITH 5- TITLE 2 IODOTUBERCIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE HASPIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GERM CELL-SPECIFIC GENE 2 PROTEIN,H-HASPIN,HAPLOID GERM COMPND 5 CELL-SPECIFIC NUCLEAR PROTEIN KINASE; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HASPIN, GSG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, INHIBITORS, SLOW OFF-RATE, KINETICS, HALOGEN, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.HEROVEN,A.CHAIKUAD,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,S.KNAPP, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 17-JAN-24 6G3A 1 REMARK REVDAT 4 04-JUL-18 6G3A 1 COMPND REMARK LINK SITE REVDAT 4 2 1 SCALE ATOM REVDAT 3 13-JUN-18 6G3A 1 JRNL REVDAT 2 16-MAY-18 6G3A 1 JRNL REVDAT 1 18-APR-18 6G3A 0 JRNL AUTH C.HEROVEN,V.GEORGI,G.K.GANOTRA,P.BRENNAN,F.WOLFREYS, JRNL AUTH 2 R.C.WADE,A.E.FERNANDEZ-MONTALVAN,A.CHAIKUAD,S.KNAPP JRNL TITL HALOGEN-AROMATIC PI INTERACTIONS MODULATE INHIBITOR JRNL TITL 2 RESIDENCE TIMES. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 7220 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29601130 JRNL DOI 10.1002/ANIE.201801666 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 86954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 4344 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 402 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : -0.89000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.581 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2752 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2609 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3740 ; 1.624 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6028 ; 0.980 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 347 ; 6.499 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;34.787 ;24.228 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;12.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.257 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 422 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3148 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 636 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1335 ; 1.146 ; 2.707 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1333 ; 1.146 ;86.156 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1672 ; 1.352 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1673 ; 1.351 ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1417 ; 1.563 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1414 ; 1.554 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2054 ; 1.775 ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3273 ; 2.042 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3273 ; 2.042 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2719 ; 7.067 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2661 ; 5.675 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5968 15.9111 4.4775 REMARK 3 T TENSOR REMARK 3 T11: 0.0261 T22: 0.0293 REMARK 3 T33: 0.0164 T12: -0.0010 REMARK 3 T13: 0.0116 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.1189 L22: 0.5445 REMARK 3 L33: 1.1183 L12: 0.3155 REMARK 3 L13: -0.8913 L23: -0.0501 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.0475 S13: 0.0796 REMARK 3 S21: -0.0497 S22: 0.0787 S23: -0.0632 REMARK 3 S31: -0.0762 S32: 0.0528 S33: -0.0521 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1366 0.2401 16.6595 REMARK 3 T TENSOR REMARK 3 T11: 0.0270 T22: 0.0180 REMARK 3 T33: 0.0226 T12: -0.0014 REMARK 3 T13: -0.0005 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.2751 L22: 2.7123 REMARK 3 L33: 1.9211 L12: 0.4187 REMARK 3 L13: 0.5994 L23: -0.6508 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: -0.0932 S13: -0.1283 REMARK 3 S21: 0.0665 S22: -0.0702 S23: -0.0786 REMARK 3 S31: 0.1935 S32: -0.0015 S33: 0.0051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 22.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 51-63% MPD AND 0.1M SPG BUFFER, PH 6.0 REMARK 280 -6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.17550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.17550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 SER A 449 REMARK 465 SER A 450 REMARK 465 GLY A 451 REMARK 465 VAL A 452 REMARK 465 ASP A 453 REMARK 465 LEU A 454 REMARK 465 GLY A 455 REMARK 465 THR A 456 REMARK 465 GLU A 457 REMARK 465 ASN A 458 REMARK 465 LEU A 459 REMARK 465 TYR A 460 REMARK 465 PHE A 461 REMARK 465 GLN A 462 REMARK 465 SER A 463 REMARK 465 MET A 464 REMARK 465 GLY A 465 REMARK 465 GLU A 466 REMARK 465 CYS A 467 REMARK 465 SER A 468 REMARK 465 GLN A 469 REMARK 465 LYS A 470 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 482 CD OE1 OE2 REMARK 470 GLU A 530 CD OE1 OE2 REMARK 470 LYS A 540 CE NZ REMARK 470 LYS A 575 NZ REMARK 470 LYS A 584 CE NZ REMARK 470 LYS A 659 CE NZ REMARK 470 LYS A 663 NZ REMARK 470 GLU A 708 CG CD OE1 OE2 REMARK 470 LYS A 768 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 539 O HOH A 820 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 516 -4.08 75.41 REMARK 500 ASP A 649 46.70 -155.85 REMARK 500 LEU A 650 55.81 -90.71 REMARK 500 ASP A 687 93.23 74.51 REMARK 500 ASP A 687 91.32 76.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues IOD A 801 and 5ID A REMARK 800 805 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6G34 RELATED DB: PDB DBREF 6G3A A 465 798 UNP Q8TF76 HASP_HUMAN 465 798 SEQADV 6G3A MET A 442 UNP Q8TF76 INITIATING METHIONINE SEQADV 6G3A HIS A 443 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A HIS A 444 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A HIS A 445 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A HIS A 446 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A HIS A 447 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A HIS A 448 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A SER A 449 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A SER A 450 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A GLY A 451 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A VAL A 452 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A ASP A 453 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A LEU A 454 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A GLY A 455 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A THR A 456 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A GLU A 457 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A ASN A 458 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A LEU A 459 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A TYR A 460 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A PHE A 461 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A GLN A 462 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A SER A 463 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A MET A 464 UNP Q8TF76 EXPRESSION TAG SEQADV 6G3A THR A 605 UNP Q8TF76 PHE 605 ENGINEERED MUTATION SEQRES 1 A 357 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 357 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY GLU CYS SEQRES 3 A 357 SER GLN LYS GLY PRO VAL PRO PHE SER HIS CYS LEU PRO SEQRES 4 A 357 THR GLU LYS LEU GLN ARG CYS GLU LYS ILE GLY GLU GLY SEQRES 5 A 357 VAL PHE GLY GLU VAL PHE GLN THR ILE ALA ASP HIS THR SEQRES 6 A 357 PRO VAL ALA ILE LYS ILE ILE ALA ILE GLU GLY PRO ASP SEQRES 7 A 357 LEU VAL ASN GLY SER HIS GLN LYS THR PHE GLU GLU ILE SEQRES 8 A 357 LEU PRO GLU ILE ILE ILE SER LYS GLU LEU SER LEU LEU SEQRES 9 A 357 SER GLY GLU VAL CYS ASN ARG THR GLU GLY PHE ILE GLY SEQRES 10 A 357 LEU ASN SER VAL HIS CYS VAL GLN GLY SER TYR PRO PRO SEQRES 11 A 357 LEU LEU LEU LYS ALA TRP ASP HIS TYR ASN SER THR LYS SEQRES 12 A 357 GLY SER ALA ASN ASP ARG PRO ASP PHE PHE LYS ASP ASP SEQRES 13 A 357 GLN LEU PHE ILE VAL LEU GLU THR GLU PHE GLY GLY ILE SEQRES 14 A 357 ASP LEU GLU GLN MET ARG THR LYS LEU SER SER LEU ALA SEQRES 15 A 357 THR ALA LYS SER ILE LEU HIS GLN LEU THR ALA SER LEU SEQRES 16 A 357 ALA VAL ALA GLU ALA SER LEU ARG PHE GLU HIS ARG ASP SEQRES 17 A 357 LEU HIS TRP GLY ASN VAL LEU LEU LYS LYS THR SER LEU SEQRES 18 A 357 LYS LYS LEU HIS TYR THR LEU ASN GLY LYS SER SER THR SEQRES 19 A 357 ILE PRO SER CYS GLY LEU GLN VAL SER ILE ILE ASP TYR SEQRES 20 A 357 THR LEU SER ARG LEU GLU ARG ASP GLY ILE VAL VAL PHE SEQRES 21 A 357 CYS ASP VAL SER MET ASP GLU ASP LEU PHE THR GLY ASP SEQRES 22 A 357 GLY ASP TYR GLN PHE ASP ILE TYR ARG LEU MET LYS LYS SEQRES 23 A 357 GLU ASN ASN ASN ARG TRP GLY GLU TYR HIS PRO TYR SER SEQRES 24 A 357 ASN VAL LEU TRP LEU HIS TYR LEU THR ASP LYS MET LEU SEQRES 25 A 357 LYS GLN MET THR PHE LYS THR LYS CYS ASN THR PRO ALA SEQRES 26 A 357 MET LYS GLN ILE LYS ARG LYS ILE GLN GLU PHE HIS ARG SEQRES 27 A 357 THR MET LEU ASN PHE SER SER ALA THR ASP LEU LEU CYS SEQRES 28 A 357 GLN HIS SER LEU PHE LYS HET IOD A 800 1 HET IOD A 801 4 HET 5ID A 805 20 HET DMS A 806 4 HET PO4 A 807 5 HETNAM IOD IODIDE ION HETNAM 5ID (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3- HETNAM 2 5ID D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3, HETNAM 3 5ID 4-DIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM PO4 PHOSPHATE ION HETSYN 5ID 5-IODOTUBERCIDIN FORMUL 2 IOD 2(I 1-) FORMUL 4 5ID C11 H13 I N4 O4 FORMUL 5 DMS C2 H6 O S FORMUL 6 PO4 O4 P 3- FORMUL 7 HOH *227(H2 O) HELIX 1 AA1 PRO A 474 LEU A 479 1 6 HELIX 2 AA2 PRO A 480 ARG A 486 1 7 HELIX 3 AA3 THR A 528 LEU A 545 1 18 HELIX 4 AA4 SER A 546 GLU A 548 5 3 HELIX 5 AA5 PRO A 570 LYS A 584 1 15 HELIX 6 AA6 GLU A 613 ARG A 616 5 4 HELIX 7 AA7 SER A 621 ARG A 644 1 24 HELIX 8 AA8 GLU A 708 THR A 712 5 5 HELIX 9 AA9 ASP A 716 ASN A 730 1 15 HELIX 10 AB1 PRO A 738 GLN A 755 1 18 HELIX 11 AB2 THR A 764 MET A 781 1 18 HELIX 12 AB3 LEU A 782 PHE A 784 5 3 HELIX 13 AB4 SER A 786 HIS A 794 1 9 HELIX 14 AB5 SER A 795 LYS A 798 5 4 SHEET 1 AA1 5 GLU A 488 GLY A 493 0 SHEET 2 AA1 5 GLY A 496 ALA A 503 -1 O GLN A 500 N GLU A 488 SHEET 3 AA1 5 THR A 506 ILE A 515 -1 O ILE A 510 N PHE A 499 SHEET 4 AA1 5 LEU A 599 GLU A 606 -1 O LEU A 603 N LYS A 511 SHEET 5 AA1 5 LEU A 559 GLN A 566 -1 N SER A 561 O GLU A 604 SHEET 1 AA2 2 LEU A 520 VAL A 521 0 SHEET 2 AA2 2 SER A 524 HIS A 525 -1 O SER A 524 N VAL A 521 SHEET 1 AA3 3 ILE A 610 ASP A 611 0 SHEET 2 AA3 3 VAL A 655 LYS A 659 -1 O LEU A 657 N ILE A 610 SHEET 3 AA3 3 LEU A 681 ILE A 685 -1 O SER A 684 N LEU A 656 SHEET 1 AA4 2 LYS A 664 LEU A 669 0 SHEET 2 AA4 2 LYS A 672 PRO A 677 -1 O ILE A 676 N LEU A 665 SHEET 1 AA5 2 LEU A 693 ARG A 695 0 SHEET 2 AA5 2 ILE A 698 VAL A 700 -1 O VAL A 700 N LEU A 693 LINK I CIOD A 801 IAE 5ID A 805 1555 1555 3.10 SITE 1 AC1 3 LYS A 511 IOD A 801 5ID A 805 SITE 1 AC2 3 TYR A 667 LYS A 672 HOH A 858 SITE 1 AC3 5 PRO A 571 ARG A 695 ILE A 698 VAL A 700 SITE 2 AC3 5 HOH A 919 SITE 1 AC4 23 ILE A 490 GLY A 491 GLU A 492 PHE A 495 SITE 2 AC4 23 ALA A 509 LYS A 511 ILE A 557 THR A 605 SITE 3 AC4 23 GLU A 606 GLY A 608 GLY A 609 ASP A 611 SITE 4 AC4 23 GLY A 653 LEU A 656 ILE A 686 ASP A 687 SITE 5 AC4 23 IOD A 800 HOH A 823 HOH A 837 HOH A 850 SITE 6 AC4 23 HOH A 868 HOH A 930 HOH A 976 CRYST1 78.351 78.700 79.800 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012531 0.00000