HEADER ONCOPROTEIN 26-MAR-18 6G3P TITLE X-RAY STRUCTURE OF SELENO-METHIONINE LABELLED NSD3-PWWP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE NSD3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 247-398; COMPND 5 SYNONYM: NUCLEAR SET DOMAIN-CONTAINING PROTEIN 3,PROTEIN WHISTLE, COMPND 6 WHSC1-LIKE 1 ISOFORM 9 WITH METHYLTRANSFERASE ACTIVITY TO LYSINE, COMPND 7 WOLF-HIRSCHHORN SYNDROME CANDIDATE 1-LIKE PROTEIN 1,WHSC1-LIKE COMPND 8 PROTEIN 1,NSD3-PWWP1; COMPND 9 EC: 2.1.1.43; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NSD3, WHSC1L1, DC28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, PWWP DOMAIN, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BOETTCHER,B.J.MUELLAUER,A.WEISS-PUXBAUM,A.ZOEPHEL REVDAT 2 15-JAN-20 6G3P 1 JRNL REVDAT 1 26-JUN-19 6G3P 0 JRNL AUTH J.BOTTCHER,D.DILWORTH,U.REISER,R.A.NEUMULLER,M.SCHLEICHER, JRNL AUTH 2 M.PETRONCZKI,M.ZEEB,N.MISCHERIKOW,A.ALLALI-HASSANI, JRNL AUTH 3 M.M.SZEWCZYK,F.LI,S.KENNEDY,M.VEDADI,D.BARSYTE-LOVEJOY, JRNL AUTH 4 P.J.BROWN,K.V.M.HUBER,C.M.ROGERS,C.I.WELLS,O.FEDOROV, JRNL AUTH 5 K.RUMPEL,A.ZOEPHEL,M.MAYER,T.WUNBERG,D.BOSE,S.ZAHN,H.ARNHOF, JRNL AUTH 6 H.BERGER,C.REISER,A.HORMANN,T.KRAMMER,M.CORCOKOVIC,B.SHARPS, JRNL AUTH 7 S.WINKLER,D.HARING,X.L.COCKCROFT,J.E.FUCHS,B.MULLAUER, JRNL AUTH 8 A.WEISS-PUXBAUM,T.GERSTBERGER,G.BOEHMELT,C.R.VAKOC, JRNL AUTH 9 C.H.ARROWSMITH,M.PEARSON,D.B.MCCONNELL JRNL TITL FRAGMENT-BASED DISCOVERY OF A CHEMICAL PROBE FOR THE PWWP1 JRNL TITL 2 DOMAIN OF NSD3. JRNL REF NAT.CHEM.BIOL. V. 15 822 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 31285596 JRNL DOI 10.1038/S41589-019-0310-X REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 14989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 792 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2695 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2161 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2564 REMARK 3 BIN R VALUE (WORKING SET) : 0.2152 REMARK 3 BIN FREE R VALUE : 0.2309 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.86 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.62920 REMARK 3 B22 (A**2) : -10.25310 REMARK 3 B33 (A**2) : 3.62390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.88700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.410 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.366 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.869 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.805 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4127 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5568 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1464 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 691 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4127 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 494 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4302 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.74 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -1.9860 2.5008 -33.7412 REMARK 3 T TENSOR REMARK 3 T11: -0.0301 T22: -0.0816 REMARK 3 T33: -0.0371 T12: 0.0010 REMARK 3 T13: 0.0063 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.2053 L22: 0.4546 REMARK 3 L33: 0.3173 L12: 0.4611 REMARK 3 L13: 0.0857 L23: 0.3114 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: 0.0395 S13: -0.0883 REMARK 3 S21: -0.0099 S22: 0.0117 S23: 0.0267 REMARK 3 S31: -0.0261 S32: 0.1180 S33: -0.0605 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -24.8398 14.8723 -34.4424 REMARK 3 T TENSOR REMARK 3 T11: -0.0368 T22: -0.1124 REMARK 3 T33: -0.0618 T12: 0.0026 REMARK 3 T13: -0.0038 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 2.4965 L22: 1.9752 REMARK 3 L33: 0.4117 L12: -0.6208 REMARK 3 L13: 0.4103 L23: -0.0054 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.1015 S13: 0.1566 REMARK 3 S21: -0.0551 S22: 0.0293 S23: -0.0121 REMARK 3 S31: -0.0884 S32: 0.0623 S33: -0.0405 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -25.6898 5.8507 -1.2469 REMARK 3 T TENSOR REMARK 3 T11: -0.1367 T22: 0.1130 REMARK 3 T33: -0.2460 T12: 0.0109 REMARK 3 T13: -0.0014 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 3.0865 L22: 0.2901 REMARK 3 L33: 4.7749 L12: -0.8638 REMARK 3 L13: 0.7128 L23: -1.0527 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: -0.0006 S13: -0.0929 REMARK 3 S21: -0.0256 S22: 0.0078 S23: -0.0249 REMARK 3 S31: -0.0041 S32: 0.0686 S33: -0.0034 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -3.1194 9.4651 11.4501 REMARK 3 T TENSOR REMARK 3 T11: -0.0915 T22: 0.0078 REMARK 3 T33: -0.2314 T12: -0.0555 REMARK 3 T13: -0.0104 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.5570 L22: 1.4600 REMARK 3 L33: 5.7468 L12: 0.6285 REMARK 3 L13: -1.2873 L23: -1.2293 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.0158 S13: 0.0231 REMARK 3 S21: -0.0443 S22: -0.0122 S23: 0.0070 REMARK 3 S31: -0.0078 S32: 0.0307 S33: -0.0004 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29364 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 17.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.509 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.53 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 9.0, 23% PEG3350, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.27500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 246 REMARK 465 GLU A 247 REMARK 465 ALA A 248 REMARK 465 VAL A 257 REMARK 465 PRO A 258 REMARK 465 THR A 259 REMARK 465 THR A 260 REMARK 465 GLU A 261 REMARK 465 VAL A 262 REMARK 465 SER A 263 REMARK 465 THR A 344 REMARK 465 LYS A 345 REMARK 465 GLN A 346 REMARK 465 ALA A 347 REMARK 465 SER A 348 REMARK 465 ASN A 349 REMARK 465 HIS A 350 REMARK 465 SER A 351 REMARK 465 GLU A 352 REMARK 465 LYS A 353 REMARK 465 GLN A 354 REMARK 465 LYS A 355 REMARK 465 ILE A 356 REMARK 465 ARG A 357 REMARK 465 LYS A 358 REMARK 465 PRO A 359 REMARK 465 ASP A 396 REMARK 465 LYS A 397 REMARK 465 GLN A 398 REMARK 465 GLY B 246 REMARK 465 GLU B 247 REMARK 465 ALA B 248 REMARK 465 PRO B 249 REMARK 465 VAL B 250 REMARK 465 GLN B 251 REMARK 465 PRO B 252 REMARK 465 ILE B 253 REMARK 465 LEU B 254 REMARK 465 SER B 255 REMARK 465 SER B 256 REMARK 465 VAL B 257 REMARK 465 PRO B 258 REMARK 465 THR B 259 REMARK 465 THR B 260 REMARK 465 GLU B 261 REMARK 465 VAL B 262 REMARK 465 SER B 263 REMARK 465 THR B 264 REMARK 465 GLY B 265 REMARK 465 ALA B 347 REMARK 465 SER B 348 REMARK 465 ASP B 396 REMARK 465 LYS B 397 REMARK 465 GLN B 398 REMARK 465 GLY C 246 REMARK 465 GLU C 247 REMARK 465 ALA C 248 REMARK 465 PRO C 249 REMARK 465 VAL C 250 REMARK 465 GLN C 251 REMARK 465 PRO C 252 REMARK 465 ILE C 253 REMARK 465 LEU C 254 REMARK 465 SER C 255 REMARK 465 SER C 256 REMARK 465 VAL C 257 REMARK 465 PRO C 258 REMARK 465 THR C 259 REMARK 465 THR C 260 REMARK 465 GLU C 261 REMARK 465 VAL C 262 REMARK 465 SER C 263 REMARK 465 THR C 264 REMARK 465 GLY C 265 REMARK 465 LYS C 345 REMARK 465 GLN C 346 REMARK 465 ALA C 347 REMARK 465 SER C 348 REMARK 465 ASN C 349 REMARK 465 HIS C 350 REMARK 465 SER C 351 REMARK 465 GLU C 352 REMARK 465 LYS C 353 REMARK 465 GLN C 354 REMARK 465 LYS C 355 REMARK 465 ILE C 356 REMARK 465 ARG C 357 REMARK 465 LYS C 358 REMARK 465 THR C 391 REMARK 465 PHE C 392 REMARK 465 ILE C 393 REMARK 465 TYR C 394 REMARK 465 ILE C 395 REMARK 465 ASP C 396 REMARK 465 LYS C 397 REMARK 465 GLN C 398 REMARK 465 GLY D 246 REMARK 465 GLU D 247 REMARK 465 ALA D 248 REMARK 465 PRO D 249 REMARK 465 VAL D 250 REMARK 465 GLN D 251 REMARK 465 PRO D 252 REMARK 465 ILE D 253 REMARK 465 LEU D 254 REMARK 465 SER D 255 REMARK 465 SER D 256 REMARK 465 VAL D 257 REMARK 465 PRO D 258 REMARK 465 THR D 259 REMARK 465 THR D 260 REMARK 465 GLU D 261 REMARK 465 VAL D 262 REMARK 465 SER D 263 REMARK 465 THR D 264 REMARK 465 GLY D 265 REMARK 465 THR D 344 REMARK 465 LYS D 345 REMARK 465 GLN D 346 REMARK 465 ALA D 347 REMARK 465 SER D 348 REMARK 465 ASN D 349 REMARK 465 HIS D 350 REMARK 465 SER D 351 REMARK 465 GLU D 352 REMARK 465 LYS D 353 REMARK 465 GLN D 354 REMARK 465 LYS D 355 REMARK 465 ILE D 356 REMARK 465 ARG D 357 REMARK 465 LYS D 358 REMARK 465 THR D 391 REMARK 465 PHE D 392 REMARK 465 ILE D 393 REMARK 465 TYR D 394 REMARK 465 ILE D 395 REMARK 465 ASP D 396 REMARK 465 LYS D 397 REMARK 465 GLN D 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 314 -165.80 -170.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6G24 RELATED DB: PDB REMARK 900 RELATED ID: 6G25 RELATED DB: PDB REMARK 900 RELATED ID: 6G27 RELATED DB: PDB REMARK 900 RELATED ID: 6G29 RELATED DB: PDB REMARK 900 RELATED ID: 6G2B RELATED DB: PDB REMARK 900 RELATED ID: 6G2C RELATED DB: PDB REMARK 900 RELATED ID: 6G2E RELATED DB: PDB REMARK 900 RELATED ID: 6G2F RELATED DB: PDB REMARK 900 RELATED ID: 6G2O RELATED DB: PDB DBREF 6G3P A 247 398 UNP Q9BZ95 NSD3_HUMAN 247 398 DBREF 6G3P B 247 398 UNP Q9BZ95 NSD3_HUMAN 247 398 DBREF 6G3P C 247 398 UNP Q9BZ95 NSD3_HUMAN 247 398 DBREF 6G3P D 247 398 UNP Q9BZ95 NSD3_HUMAN 247 398 SEQADV 6G3P GLY A 246 UNP Q9BZ95 EXPRESSION TAG SEQADV 6G3P GLY B 246 UNP Q9BZ95 EXPRESSION TAG SEQADV 6G3P GLY C 246 UNP Q9BZ95 EXPRESSION TAG SEQADV 6G3P GLY D 246 UNP Q9BZ95 EXPRESSION TAG SEQRES 1 A 153 GLY GLU ALA PRO VAL GLN PRO ILE LEU SER SER VAL PRO SEQRES 2 A 153 THR THR GLU VAL SER THR GLY VAL LYS PHE GLN VAL GLY SEQRES 3 A 153 ASP LEU VAL TRP SER LYS VAL GLY THR TYR PRO TRP TRP SEQRES 4 A 153 PRO CYS MSE VAL SER SER ASP PRO GLN LEU GLU VAL HIS SEQRES 5 A 153 THR LYS ILE ASN THR ARG GLY ALA ARG GLU TYR HIS VAL SEQRES 6 A 153 GLN PHE PHE SER ASN GLN PRO GLU ARG ALA TRP VAL HIS SEQRES 7 A 153 GLU LYS ARG VAL ARG GLU TYR LYS GLY HIS LYS GLN TYR SEQRES 8 A 153 GLU GLU LEU LEU ALA GLU ALA THR LYS GLN ALA SER ASN SEQRES 9 A 153 HIS SER GLU LYS GLN LYS ILE ARG LYS PRO ARG PRO GLN SEQRES 10 A 153 ARG GLU ARG ALA GLN TRP ASP ILE GLY ILE ALA HIS ALA SEQRES 11 A 153 GLU LYS ALA LEU LYS MSE THR ARG GLU GLU ARG ILE GLU SEQRES 12 A 153 GLN TYR THR PHE ILE TYR ILE ASP LYS GLN SEQRES 1 B 153 GLY GLU ALA PRO VAL GLN PRO ILE LEU SER SER VAL PRO SEQRES 2 B 153 THR THR GLU VAL SER THR GLY VAL LYS PHE GLN VAL GLY SEQRES 3 B 153 ASP LEU VAL TRP SER LYS VAL GLY THR TYR PRO TRP TRP SEQRES 4 B 153 PRO CYS MSE VAL SER SER ASP PRO GLN LEU GLU VAL HIS SEQRES 5 B 153 THR LYS ILE ASN THR ARG GLY ALA ARG GLU TYR HIS VAL SEQRES 6 B 153 GLN PHE PHE SER ASN GLN PRO GLU ARG ALA TRP VAL HIS SEQRES 7 B 153 GLU LYS ARG VAL ARG GLU TYR LYS GLY HIS LYS GLN TYR SEQRES 8 B 153 GLU GLU LEU LEU ALA GLU ALA THR LYS GLN ALA SER ASN SEQRES 9 B 153 HIS SER GLU LYS GLN LYS ILE ARG LYS PRO ARG PRO GLN SEQRES 10 B 153 ARG GLU ARG ALA GLN TRP ASP ILE GLY ILE ALA HIS ALA SEQRES 11 B 153 GLU LYS ALA LEU LYS MSE THR ARG GLU GLU ARG ILE GLU SEQRES 12 B 153 GLN TYR THR PHE ILE TYR ILE ASP LYS GLN SEQRES 1 C 153 GLY GLU ALA PRO VAL GLN PRO ILE LEU SER SER VAL PRO SEQRES 2 C 153 THR THR GLU VAL SER THR GLY VAL LYS PHE GLN VAL GLY SEQRES 3 C 153 ASP LEU VAL TRP SER LYS VAL GLY THR TYR PRO TRP TRP SEQRES 4 C 153 PRO CYS MSE VAL SER SER ASP PRO GLN LEU GLU VAL HIS SEQRES 5 C 153 THR LYS ILE ASN THR ARG GLY ALA ARG GLU TYR HIS VAL SEQRES 6 C 153 GLN PHE PHE SER ASN GLN PRO GLU ARG ALA TRP VAL HIS SEQRES 7 C 153 GLU LYS ARG VAL ARG GLU TYR LYS GLY HIS LYS GLN TYR SEQRES 8 C 153 GLU GLU LEU LEU ALA GLU ALA THR LYS GLN ALA SER ASN SEQRES 9 C 153 HIS SER GLU LYS GLN LYS ILE ARG LYS PRO ARG PRO GLN SEQRES 10 C 153 ARG GLU ARG ALA GLN TRP ASP ILE GLY ILE ALA HIS ALA SEQRES 11 C 153 GLU LYS ALA LEU LYS MSE THR ARG GLU GLU ARG ILE GLU SEQRES 12 C 153 GLN TYR THR PHE ILE TYR ILE ASP LYS GLN SEQRES 1 D 153 GLY GLU ALA PRO VAL GLN PRO ILE LEU SER SER VAL PRO SEQRES 2 D 153 THR THR GLU VAL SER THR GLY VAL LYS PHE GLN VAL GLY SEQRES 3 D 153 ASP LEU VAL TRP SER LYS VAL GLY THR TYR PRO TRP TRP SEQRES 4 D 153 PRO CYS MSE VAL SER SER ASP PRO GLN LEU GLU VAL HIS SEQRES 5 D 153 THR LYS ILE ASN THR ARG GLY ALA ARG GLU TYR HIS VAL SEQRES 6 D 153 GLN PHE PHE SER ASN GLN PRO GLU ARG ALA TRP VAL HIS SEQRES 7 D 153 GLU LYS ARG VAL ARG GLU TYR LYS GLY HIS LYS GLN TYR SEQRES 8 D 153 GLU GLU LEU LEU ALA GLU ALA THR LYS GLN ALA SER ASN SEQRES 9 D 153 HIS SER GLU LYS GLN LYS ILE ARG LYS PRO ARG PRO GLN SEQRES 10 D 153 ARG GLU ARG ALA GLN TRP ASP ILE GLY ILE ALA HIS ALA SEQRES 11 D 153 GLU LYS ALA LEU LYS MSE THR ARG GLU GLU ARG ILE GLU SEQRES 12 D 153 GLN TYR THR PHE ILE TYR ILE ASP LYS GLN MODRES 6G3P MSE A 287 MET MODIFIED RESIDUE MODRES 6G3P MSE A 381 MET MODIFIED RESIDUE MODRES 6G3P MSE B 287 MET MODIFIED RESIDUE MODRES 6G3P MSE B 381 MET MODIFIED RESIDUE MODRES 6G3P MSE C 287 MET MODIFIED RESIDUE MODRES 6G3P MSE C 381 MET MODIFIED RESIDUE MODRES 6G3P MSE D 287 MET MODIFIED RESIDUE MODRES 6G3P MSE D 381 MET MODIFIED RESIDUE HET MSE A 287 8 HET MSE A 381 8 HET MSE B 287 8 HET MSE B 381 8 HET MSE C 287 8 HET MSE C 381 8 HET MSE D 287 8 HET MSE D 381 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 HOH *53(H2 O) HELIX 1 AA1 GLN A 251 SER A 256 5 6 HELIX 2 AA2 GLY A 332 LYS A 334 5 3 HELIX 3 AA3 GLN A 335 ALA A 343 1 9 HELIX 4 AA4 PRO A 361 LEU A 379 1 19 HELIX 5 AA5 THR A 382 THR A 391 1 10 HELIX 6 AA6 GLY B 332 LYS B 334 5 3 HELIX 7 AA7 GLN B 335 GLN B 346 1 12 HELIX 8 AA8 HIS B 350 LYS B 358 1 9 HELIX 9 AA9 PRO B 361 LEU B 379 1 19 HELIX 10 AB1 THR B 382 THR B 391 1 10 HELIX 11 AB2 LYS C 334 THR C 344 1 11 HELIX 12 AB3 PRO C 361 LEU C 379 1 19 HELIX 13 AB4 THR C 382 TYR C 390 1 9 HELIX 14 AB5 GLY D 332 LYS D 334 5 3 HELIX 15 AB6 GLN D 335 ALA D 343 1 9 HELIX 16 AB7 PRO D 361 LYS D 380 1 20 HELIX 17 AB8 THR D 382 TYR D 390 1 9 SHEET 1 AA1 3 THR A 298 ILE A 300 0 SHEET 2 AA1 3 ARG A 306 PHE A 312 -1 O GLU A 307 N LYS A 299 SHEET 3 AA1 3 ARG A 319 HIS A 323 -1 O VAL A 322 N TYR A 308 SHEET 1 AA2 5 THR A 298 ILE A 300 0 SHEET 2 AA2 5 ARG A 306 PHE A 312 -1 O GLU A 307 N LYS A 299 SHEET 3 AA2 5 TRP A 284 VAL A 288 -1 N MSE A 287 O GLN A 311 SHEET 4 AA2 5 LEU A 273 SER A 276 -1 N VAL A 274 O CYS A 286 SHEET 5 AA2 5 VAL A 327 GLU A 329 -1 O ARG A 328 N TRP A 275 SHEET 1 AA3 3 THR B 298 ILE B 300 0 SHEET 2 AA3 3 ARG B 306 PHE B 312 -1 O GLU B 307 N LYS B 299 SHEET 3 AA3 3 ARG B 319 HIS B 323 -1 O VAL B 322 N TYR B 308 SHEET 1 AA4 5 THR B 298 ILE B 300 0 SHEET 2 AA4 5 ARG B 306 PHE B 312 -1 O GLU B 307 N LYS B 299 SHEET 3 AA4 5 TRP B 284 VAL B 288 -1 N MSE B 287 O GLN B 311 SHEET 4 AA4 5 LEU B 273 SER B 276 -1 N VAL B 274 O CYS B 286 SHEET 5 AA4 5 VAL B 327 GLU B 329 -1 O ARG B 328 N TRP B 275 SHEET 1 AA5 3 THR C 298 ILE C 300 0 SHEET 2 AA5 3 ARG C 306 PHE C 312 -1 O GLU C 307 N LYS C 299 SHEET 3 AA5 3 ARG C 319 HIS C 323 -1 O VAL C 322 N TYR C 308 SHEET 1 AA6 5 THR C 298 ILE C 300 0 SHEET 2 AA6 5 ARG C 306 PHE C 312 -1 O GLU C 307 N LYS C 299 SHEET 3 AA6 5 TRP C 284 VAL C 288 -1 N MSE C 287 O GLN C 311 SHEET 4 AA6 5 LEU C 273 SER C 276 -1 N VAL C 274 O CYS C 286 SHEET 5 AA6 5 VAL C 327 GLU C 329 -1 O ARG C 328 N TRP C 275 SHEET 1 AA7 3 THR D 298 ILE D 300 0 SHEET 2 AA7 3 ARG D 306 PHE D 312 -1 O GLU D 307 N LYS D 299 SHEET 3 AA7 3 ARG D 319 HIS D 323 -1 O VAL D 322 N TYR D 308 SHEET 1 AA8 5 THR D 298 ILE D 300 0 SHEET 2 AA8 5 ARG D 306 PHE D 312 -1 O GLU D 307 N LYS D 299 SHEET 3 AA8 5 TRP D 284 VAL D 288 -1 N MSE D 287 O GLN D 311 SHEET 4 AA8 5 LEU D 273 SER D 276 -1 N VAL D 274 O CYS D 286 SHEET 5 AA8 5 VAL D 327 GLU D 329 -1 O ARG D 328 N TRP D 275 LINK C CYS A 286 N MSE A 287 1555 1555 1.34 LINK C MSE A 287 N VAL A 288 1555 1555 1.34 LINK C LYS A 380 N MSE A 381 1555 1555 1.34 LINK C MSE A 381 N THR A 382 1555 1555 1.34 LINK C CYS B 286 N MSE B 287 1555 1555 1.34 LINK C MSE B 287 N VAL B 288 1555 1555 1.35 LINK C LYS B 380 N MSE B 381 1555 1555 1.34 LINK C MSE B 381 N THR B 382 1555 1555 1.34 LINK C CYS C 286 N MSE C 287 1555 1555 1.34 LINK C MSE C 287 N VAL C 288 1555 1555 1.35 LINK C LYS C 380 N MSE C 381 1555 1555 1.35 LINK C MSE C 381 N THR C 382 1555 1555 1.34 LINK C CYS D 286 N MSE D 287 1555 1555 1.34 LINK C MSE D 287 N VAL D 288 1555 1555 1.35 LINK C LYS D 380 N MSE D 381 1555 1555 1.35 LINK C MSE D 381 N THR D 382 1555 1555 1.35 CRYST1 45.040 88.550 77.970 90.00 90.08 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022202 0.000000 0.000031 0.00000 SCALE2 0.000000 0.011293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012825 0.00000