HEADER CHAPERONE 26-MAR-18 6G3R TITLE STRUCTURE OF TELLURIUM-CENTRED ANDERSON-EVANS POLYOXOTUNGSTATE (TEW) TITLE 2 BOUND TO THE NUCLEOTIDE BINDING DOMAIN OF HSP70. STRUCTURE ONE OF TWO TITLE 3 TEW-HSP70 STRUCTURES DEPOSITED. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK 70 KDA PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEAT SHOCK 70 KDA PROTEIN 1,HSP70.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSPA1A, HSP72, HSPA1, HSX70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATPASE DOMAIN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR A.MAC SWEENEY,A.CHAMBOVEY,M.WICKI,M.MUELLER,N.ARTICO,R.LANGE, AUTHOR 2 A.BIJELIC,J.BREIBECK,A.ROMPEL REVDAT 2 08-MAY-24 6G3R 1 LINK REVDAT 1 17-OCT-18 6G3R 0 JRNL AUTH A.MAC SWEENEY,A.CHAMBOVEY,M.WICKI,M.MULLER,N.ARTICO,R.LANGE, JRNL AUTH 2 A.BIJELIC,J.BREIBECK,A.ROMPEL JRNL TITL THE CRYSTALLIZATION ADDITIVE HEXATUNGSTOTELLURATE PROMOTES JRNL TITL 2 THE CRYSTALLIZATION OF THE HSP70 NUCLEOTIDE BINDING DOMAIN JRNL TITL 3 INTO TWO DIFFERENT CRYSTAL FORMS. JRNL REF PLOS ONE V. 13 99639 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 29949628 JRNL DOI 10.1371/JOURNAL.PONE.0199639 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 75412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3970 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5575 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 294 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.203 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3145 ; 0.030 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2896 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4355 ; 2.376 ; 1.921 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6707 ; 1.706 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 5.729 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;35.031 ;24.028 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 531 ;14.331 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;21.466 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3525 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 645 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1560 ; 3.069 ; 1.917 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1559 ; 3.045 ; 1.911 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1961 ; 3.519 ; 2.891 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1962 ; 3.558 ; 2.893 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1585 ; 5.932 ; 2.410 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1540 ; 5.825 ; 2.383 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2252 ; 6.411 ; 3.403 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3510 ; 5.491 ;24.270 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3458 ; 5.408 ;23.889 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6041 ; 5.975 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 216 ;23.709 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6072 ;12.887 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 151677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 25% PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.22050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.71300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.34550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.71300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.22050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.34550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 25 CD CE NZ REMARK 470 LYS A 88 CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 250 CD CE NZ REMARK 470 ARG A 269 NE CZ NH1 NH2 REMARK 470 LYS A 325 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 27 CD GLU A 27 OE2 0.088 REMARK 500 ALA A 60 C ALA A 60 O -0.120 REMARK 500 ASP A 99 CB ASP A 99 CG 0.182 REMARK 500 GLU A 118 CD GLU A 118 OE2 -0.100 REMARK 500 GLU A 132 CD GLU A 132 OE2 0.083 REMARK 500 GLY A 189 C GLY A 189 O 0.108 REMARK 500 GLU A 192 CD GLU A 192 OE1 -0.169 REMARK 500 ARG A 193 CZ ARG A 193 NH1 -0.083 REMARK 500 ARG A 272 CD ARG A 272 NE -0.108 REMARK 500 ARG A 311 CZ ARG A 311 NH1 0.079 REMARK 500 GLU A 315 CD GLU A 315 OE1 0.070 REMARK 500 LEU A 349 C LEU A 349 O 0.161 REMARK 500 MET A 381 C MET A 381 O -0.157 REMARK 500 GLY A 382 CA GLY A 382 C 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASN A 62 N - CA - CB ANGL. DEV. = -11.3 DEGREES REMARK 500 ASP A 99 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 LYS A 100 CD - CE - NZ ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 187 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 187 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 247 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 261 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 264 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 311 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 342 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 342 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 357 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 361 10.01 -142.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 TYR A 15 O 118.9 REMARK 620 3 ADP A 401 O3B 122.3 105.9 REMARK 620 4 HOH A 578 O 74.9 164.9 59.4 REMARK 620 5 HOH A 587 O 73.0 112.1 56.9 64.0 REMARK 620 6 HOH A 643 O 93.8 91.3 120.8 94.0 156.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 199 OD1 REMARK 620 2 THR A 204 O 111.0 REMARK 620 3 THR A 204 OG1 175.6 64.7 REMARK 620 4 ASP A 206 OD2 111.0 102.7 69.5 REMARK 620 5 PO4 A 404 O2 94.4 133.3 89.7 103.6 REMARK 620 6 HOH A 511 O 48.2 113.1 134.0 143.1 57.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 401 O3B REMARK 620 2 PO4 A 404 O2 96.9 REMARK 620 3 HOH A 511 O 93.5 89.6 REMARK 620 4 HOH A 540 O 172.3 89.3 91.0 REMARK 620 5 HOH A 578 O 81.7 174.1 84.8 92.6 REMARK 620 6 HOH A 587 O 86.6 91.2 179.2 88.8 94.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TEW A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 DBREF 6G3R A 3 382 UNP P0DMV8 HS71A_HUMAN 3 382 SEQRES 1 A 380 LYS ALA ALA ALA ILE GLY ILE ASP LEU GLY THR THR TYR SEQRES 2 A 380 SER CYS VAL GLY VAL PHE GLN HIS GLY LYS VAL GLU ILE SEQRES 3 A 380 ILE ALA ASN ASP GLN GLY ASN ARG THR THR PRO SER TYR SEQRES 4 A 380 VAL ALA PHE THR ASP THR GLU ARG LEU ILE GLY ASP ALA SEQRES 5 A 380 ALA LYS ASN GLN VAL ALA LEU ASN PRO GLN ASN THR VAL SEQRES 6 A 380 PHE ASP ALA LYS ARG LEU ILE GLY ARG LYS PHE GLY ASP SEQRES 7 A 380 PRO VAL VAL GLN SER ASP MET LYS HIS TRP PRO PHE GLN SEQRES 8 A 380 VAL ILE ASN ASP GLY ASP LYS PRO LYS VAL GLN VAL SER SEQRES 9 A 380 TYR LYS GLY GLU THR LYS ALA PHE TYR PRO GLU GLU ILE SEQRES 10 A 380 SER SER MET VAL LEU THR LYS MET LYS GLU ILE ALA GLU SEQRES 11 A 380 ALA TYR LEU GLY TYR PRO VAL THR ASN ALA VAL ILE THR SEQRES 12 A 380 VAL PRO ALA TYR PHE ASN ASP SER GLN ARG GLN ALA THR SEQRES 13 A 380 LYS ASP ALA GLY VAL ILE ALA GLY LEU ASN VAL LEU ARG SEQRES 14 A 380 ILE ILE ASN GLU PRO THR ALA ALA ALA ILE ALA TYR GLY SEQRES 15 A 380 LEU ASP ARG THR GLY LYS GLY GLU ARG ASN VAL LEU ILE SEQRES 16 A 380 PHE ASP LEU GLY GLY GLY THR PHE ASP VAL SER ILE LEU SEQRES 17 A 380 THR ILE ASP ASP GLY ILE PHE GLU VAL LYS ALA THR ALA SEQRES 18 A 380 GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP ASN ARG SEQRES 19 A 380 LEU VAL ASN HIS PHE VAL GLU GLU PHE LYS ARG LYS HIS SEQRES 20 A 380 LYS LYS ASP ILE SER GLN ASN LYS ARG ALA VAL ARG ARG SEQRES 21 A 380 LEU ARG THR ALA CYS GLU ARG ALA LYS ARG THR LEU SER SEQRES 22 A 380 SER SER THR GLN ALA SER LEU GLU ILE ASP SER LEU PHE SEQRES 23 A 380 GLU GLY ILE ASP PHE TYR THR SER ILE THR ARG ALA ARG SEQRES 24 A 380 PHE GLU GLU LEU CYS SER ASP LEU PHE ARG SER THR LEU SEQRES 25 A 380 GLU PRO VAL GLU LYS ALA LEU ARG ASP ALA LYS LEU ASP SEQRES 26 A 380 LYS ALA GLN ILE HIS ASP LEU VAL LEU VAL GLY GLY SER SEQRES 27 A 380 THR ARG ILE PRO LYS VAL GLN LYS LEU LEU GLN ASP PHE SEQRES 28 A 380 PHE ASN GLY ARG ASP LEU ASN LYS SER ILE ASN PRO ASP SEQRES 29 A 380 GLU ALA VAL ALA TYR GLY ALA ALA VAL GLN ALA ALA ILE SEQRES 30 A 380 LEU MET GLY HET ADP A 401 27 HET TEW A 402 31 HET MG A 403 1 HET PO4 A 404 5 HET NA A 405 1 HET NA A 406 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM TEW 6-TUNGSTOTELLURATE(VI) HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 TEW O24 TE W6 6- FORMUL 4 MG MG 2+ FORMUL 5 PO4 O4 P 3- FORMUL 6 NA 2(NA 1+) FORMUL 8 HOH *317(H2 O) HELIX 1 AA1 GLY A 52 ASN A 57 1 6 HELIX 2 AA2 ASN A 62 GLN A 64 5 3 HELIX 3 AA3 ASP A 69 LEU A 73 5 5 HELIX 4 AA4 ASP A 80 LYS A 88 1 9 HELIX 5 AA5 TYR A 115 GLY A 136 1 22 HELIX 6 AA6 ASN A 151 ALA A 165 1 15 HELIX 7 AA7 GLU A 175 TYR A 183 1 9 HELIX 8 AA8 GLY A 184 THR A 188 5 5 HELIX 9 AA9 GLY A 229 LYS A 250 1 22 HELIX 10 AB1 ASN A 256 LEU A 274 1 19 HELIX 11 AB2 ARG A 299 CYS A 306 1 8 HELIX 12 AB3 CYS A 306 THR A 313 1 8 HELIX 13 AB4 THR A 313 LYS A 325 1 13 HELIX 14 AB5 ASP A 327 ILE A 331 5 5 HELIX 15 AB6 GLY A 338 ARG A 342 5 5 HELIX 16 AB7 ILE A 343 PHE A 354 1 12 HELIX 17 AB8 GLU A 367 GLY A 382 1 16 SHEET 1 AA1 3 LYS A 25 ILE A 28 0 SHEET 2 AA1 3 TYR A 15 GLN A 22 -1 N VAL A 20 O GLU A 27 SHEET 3 AA1 3 THR A 38 PRO A 39 -1 O THR A 38 N SER A 16 SHEET 1 AA2 5 LYS A 25 ILE A 28 0 SHEET 2 AA2 5 TYR A 15 GLN A 22 -1 N VAL A 20 O GLU A 27 SHEET 3 AA2 5 ILE A 7 ASP A 10 -1 N GLY A 8 O GLY A 19 SHEET 4 AA2 5 ASN A 141 VAL A 146 1 O VAL A 143 N ILE A 9 SHEET 5 AA2 5 ASN A 168 ASN A 174 1 O LEU A 170 N ALA A 142 SHEET 1 AA3 3 ARG A 49 ILE A 51 0 SHEET 2 AA3 3 VAL A 42 PHE A 44 -1 N ALA A 43 O LEU A 50 SHEET 3 AA3 3 THR A 66 VAL A 67 -1 O VAL A 67 N VAL A 42 SHEET 1 AA4 3 GLN A 93 ASP A 97 0 SHEET 2 AA4 3 LYS A 100 TYR A 107 -1 O LYS A 100 N ASP A 97 SHEET 3 AA4 3 GLU A 110 PHE A 114 -1 O LYS A 112 N VAL A 105 SHEET 1 AA5 4 ILE A 216 ASP A 225 0 SHEET 2 AA5 4 PHE A 205 ASP A 213 -1 N VAL A 207 O ALA A 223 SHEET 3 AA5 4 GLU A 192 LEU A 200 -1 N ILE A 197 O SER A 208 SHEET 4 AA5 4 ASP A 333 VAL A 337 1 O ASP A 333 N LEU A 196 SHEET 1 AA6 2 GLN A 279 PHE A 288 0 SHEET 2 AA6 2 ILE A 291 THR A 298 -1 O PHE A 293 N ILE A 284 LINK OD2 ASP A 10 NA NA A 406 1555 1555 2.65 LINK O TYR A 15 NA NA A 406 1555 1555 2.56 LINK OD1 ASP A 199 NA NA A 405 1555 1555 3.06 LINK O THR A 204 NA NA A 405 1555 1555 2.96 LINK OG1 THR A 204 NA NA A 405 1555 1555 2.64 LINK OD2 ASP A 206 NA NA A 405 1555 1555 3.07 LINK O3B ADP A 401 MG MG A 403 1555 1555 1.93 LINK O3B ADP A 401 NA NA A 406 1555 1555 2.64 LINK MG MG A 403 O2 PO4 A 404 1555 1555 1.97 LINK MG MG A 403 O HOH A 511 1555 1555 2.09 LINK MG MG A 403 O HOH A 540 1555 1555 2.09 LINK MG MG A 403 O HOH A 578 1555 1555 2.15 LINK MG MG A 403 O HOH A 587 1555 1555 2.05 LINK O2 PO4 A 404 NA NA A 405 1555 1555 2.79 LINK NA NA A 405 O HOH A 511 1555 1555 3.14 LINK NA NA A 406 O HOH A 578 1555 1555 2.76 LINK NA NA A 406 O HOH A 587 1555 1555 3.05 LINK NA NA A 406 O HOH A 643 1555 1555 2.62 SITE 1 AC1 28 GLY A 12 THR A 13 THR A 14 TYR A 15 SITE 2 AC1 28 GLY A 201 GLY A 202 GLY A 230 GLU A 268 SITE 3 AC1 28 LYS A 271 ARG A 272 SER A 275 GLY A 338 SITE 4 AC1 28 GLY A 339 SER A 340 ARG A 342 ASP A 366 SITE 5 AC1 28 TEW A 402 MG A 403 PO4 A 404 NA A 406 SITE 6 AC1 28 HOH A 511 HOH A 518 HOH A 522 HOH A 546 SITE 7 AC1 28 HOH A 578 HOH A 587 HOH A 595 HOH A 643 SITE 1 AC2 9 ARG A 272 SER A 276 ASP A 327 LYS A 328 SITE 2 AC2 9 ALA A 329 ARG A 342 ASN A 355 ADP A 401 SITE 3 AC2 9 HOH A 503 SITE 1 AC3 7 ADP A 401 PO4 A 404 NA A 406 HOH A 511 SITE 2 AC3 7 HOH A 540 HOH A 578 HOH A 587 SITE 1 AC4 14 GLY A 12 THR A 13 LYS A 71 PRO A 147 SITE 2 AC4 14 GLU A 175 THR A 204 ADP A 401 MG A 403 SITE 3 AC4 14 NA A 405 HOH A 511 HOH A 518 HOH A 540 SITE 4 AC4 14 HOH A 577 HOH A 587 SITE 1 AC5 4 ASP A 199 THR A 204 ASP A 206 PO4 A 404 SITE 1 AC6 7 ASP A 10 TYR A 15 ADP A 401 MG A 403 SITE 2 AC6 7 HOH A 578 HOH A 587 HOH A 643 CRYST1 46.441 64.691 143.426 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006972 0.00000