HEADER TRANSCRIPTION 29-MAR-18 6G5N TITLE CRYSTAL STRUCTURE OF HUMAN SP100 IN COMPLEX WITH BROMODOMAIN-FOCUSED TITLE 2 FRAGMENT XS039818E 1-(3-PHENYL-1,2,4-OXADIAZOL-5-YL)METHANAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR AUTOANTIGEN SP-100; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEAR DOT-ASSOCIATED SP100 PROTEIN,SPECKLED 100 KDA; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: BROMODOMAIN AND PHD DOMAIN CONSTRUCT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: SP100C; SOURCE 6 GENE: SP100; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSUMO-LIC KEYWDS FRAGMENT SCREENING, EPIGENETICS, BROMODOMAIN, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, XCHEM, DIAMOND I04-1, PANDDA, XCHEMEXPLORER, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.P.H.TALON,T.KROJER,C.TALLANT,G.NUNEZ-ALONSO,M.FAIRHEAD,A.SZYKOWSKA, AUTHOR 2 P.COLLINS,N.M.PEARCE,J.NG,E.MACLEAN,N.WRIGHT,A.DOUANGAMATH, AUTHOR 3 J.BRANDAO-NETO,N.BURGESS-BROWN,K.HUBER,S.KNAPP,P.E.BRENNAN, AUTHOR 4 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,F.VON DELFT REVDAT 2 01-MAY-24 6G5N 1 COMPND JRNL HETNAM REVDAT 1 11-APR-18 6G5N 0 JRNL AUTH R.P.H.TALON,D.BOWKETT,C.TALLANT,C.SCHOFIELD,F.VON DELFT, JRNL AUTH 2 S.KNAPP,G.BRUTON,P.E.BRENNAN JRNL TITL IDENTIFYING SMALL MOLECULE BINDING SITES FOR EPIGENETIC JRNL TITL 2 PROTEINS AT DOMAIN-DOMAIN INTERFACES JRNL REF BIORXIV 2018 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/283069 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1682 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 45283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4976 - 4.4417 0.98 2848 128 0.1525 0.1805 REMARK 3 2 4.4417 - 3.5276 0.95 2682 117 0.1356 0.1868 REMARK 3 3 3.5276 - 3.0823 0.98 2746 138 0.1637 0.2227 REMARK 3 4 3.0823 - 2.8008 1.00 2752 155 0.1722 0.2103 REMARK 3 5 2.8008 - 2.6002 1.00 2760 141 0.1736 0.2060 REMARK 3 6 2.6002 - 2.4469 1.00 2752 138 0.1731 0.2524 REMARK 3 7 2.4469 - 2.3245 0.99 2680 168 0.1768 0.2342 REMARK 3 8 2.3245 - 2.2233 0.95 2625 127 0.2011 0.2537 REMARK 3 9 2.2233 - 2.1378 0.97 2638 142 0.1867 0.2099 REMARK 3 10 2.1378 - 2.0640 0.97 2626 134 0.2040 0.2317 REMARK 3 11 2.0640 - 1.9995 0.96 2663 139 0.2203 0.2600 REMARK 3 12 1.9995 - 1.9423 0.96 2658 119 0.2203 0.2704 REMARK 3 13 1.9423 - 1.8912 0.97 2658 140 0.2745 0.2688 REMARK 3 14 1.8912 - 1.8451 0.98 2721 144 0.2437 0.2707 REMARK 3 15 1.8451 - 1.8031 0.98 2685 138 0.2568 0.3133 REMARK 3 16 1.8031 - 1.7648 0.95 2569 152 0.2913 0.2991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3077 REMARK 3 ANGLE : 0.804 4162 REMARK 3 CHIRALITY : 0.034 424 REMARK 3 PLANARITY : 0.004 547 REMARK 3 DIHEDRAL : 13.942 1223 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 701 THROUGH 753 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1599 -1.2133 2.1688 REMARK 3 T TENSOR REMARK 3 T11: 0.3439 T22: 0.3691 REMARK 3 T33: 0.2372 T12: 0.1013 REMARK 3 T13: -0.0701 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 0.1933 L22: 0.1171 REMARK 3 L33: 0.2513 L12: -0.0501 REMARK 3 L13: -0.1393 L23: -0.1990 REMARK 3 S TENSOR REMARK 3 S11: 0.2649 S12: 0.5543 S13: -0.1949 REMARK 3 S21: -0.3347 S22: -0.1782 S23: 0.2124 REMARK 3 S31: 0.2346 S32: 0.0420 S33: 0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 754 THROUGH 878 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4166 5.7708 21.8756 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.1568 REMARK 3 T33: 0.1918 T12: 0.0197 REMARK 3 T13: -0.0095 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.3716 L22: 0.8417 REMARK 3 L33: 1.0981 L12: -0.2265 REMARK 3 L13: -0.1762 L23: -0.3347 REMARK 3 S TENSOR REMARK 3 S11: 0.0753 S12: -0.0281 S13: 0.0553 REMARK 3 S21: 0.0846 S22: -0.0221 S23: 0.0027 REMARK 3 S31: 0.0099 S32: -0.0219 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 700 THROUGH 713 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5048 30.2505 34.0963 REMARK 3 T TENSOR REMARK 3 T11: 0.3308 T22: 0.5963 REMARK 3 T33: 0.3124 T12: 0.0734 REMARK 3 T13: 0.0133 T23: -0.1146 REMARK 3 L TENSOR REMARK 3 L11: 0.2915 L22: 0.1799 REMARK 3 L33: 0.0467 L12: -0.2093 REMARK 3 L13: -0.0602 L23: 0.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.0756 S12: -0.9369 S13: 0.4712 REMARK 3 S21: 0.4297 S22: -0.1908 S23: -0.0695 REMARK 3 S31: -0.1753 S32: -0.1450 S33: -0.0307 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 714 THROUGH 752 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0057 29.6365 32.7717 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.3859 REMARK 3 T33: 0.3078 T12: 0.0312 REMARK 3 T13: -0.0121 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 0.1822 L22: 0.1360 REMARK 3 L33: 0.2138 L12: -0.0499 REMARK 3 L13: 0.1623 L23: -0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: -0.6164 S13: 0.3760 REMARK 3 S21: 0.0802 S22: -0.0575 S23: -0.1812 REMARK 3 S31: -0.0689 S32: 0.0245 S33: 0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 753 THROUGH 795 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1673 26.0830 16.9238 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.2516 REMARK 3 T33: 0.2803 T12: 0.0596 REMARK 3 T13: 0.0695 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 0.3168 L22: 0.4900 REMARK 3 L33: 0.3853 L12: -0.3484 REMARK 3 L13: 0.2030 L23: -0.0138 REMARK 3 S TENSOR REMARK 3 S11: 0.1019 S12: 0.2285 S13: 0.2897 REMARK 3 S21: -0.2128 S22: -0.1151 S23: -0.2225 REMARK 3 S31: -0.0979 S32: 0.0079 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 796 THROUGH 808 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1055 8.2311 13.3542 REMARK 3 T TENSOR REMARK 3 T11: 0.4918 T22: 0.4198 REMARK 3 T33: 0.2538 T12: -0.1495 REMARK 3 T13: -0.1295 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.2546 L22: 0.1277 REMARK 3 L33: 0.0075 L12: 0.1193 REMARK 3 L13: -0.0036 L23: 0.0355 REMARK 3 S TENSOR REMARK 3 S11: 0.1714 S12: 0.1366 S13: -0.2321 REMARK 3 S21: -0.4061 S22: 0.2007 S23: 0.1783 REMARK 3 S31: 0.3000 S32: -0.2728 S33: 0.0950 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 809 THROUGH 829 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6741 13.2445 17.6142 REMARK 3 T TENSOR REMARK 3 T11: 0.2383 T22: 0.2396 REMARK 3 T33: 0.2759 T12: 0.0962 REMARK 3 T13: -0.0104 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.4390 L22: 0.3780 REMARK 3 L33: 0.2087 L12: 0.1927 REMARK 3 L13: 0.0272 L23: 0.1666 REMARK 3 S TENSOR REMARK 3 S11: 0.3344 S12: 0.0955 S13: -0.3497 REMARK 3 S21: -0.0909 S22: -0.1999 S23: -0.0315 REMARK 3 S31: 0.3155 S32: 0.0564 S33: 0.0790 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 830 THROUGH 851 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4361 17.3019 8.1474 REMARK 3 T TENSOR REMARK 3 T11: 0.3035 T22: 0.3511 REMARK 3 T33: 0.1985 T12: 0.1267 REMARK 3 T13: 0.0005 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.0301 L22: 0.1659 REMARK 3 L33: 0.0933 L12: 0.0088 REMARK 3 L13: -0.0205 L23: -0.0523 REMARK 3 S TENSOR REMARK 3 S11: 0.1574 S12: 0.3285 S13: 0.0113 REMARK 3 S21: -0.2392 S22: -0.1249 S23: -0.0259 REMARK 3 S31: 0.0870 S32: -0.0316 S33: -0.0006 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 852 THROUGH 875 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2215 28.4407 10.2661 REMARK 3 T TENSOR REMARK 3 T11: 0.3011 T22: 0.3444 REMARK 3 T33: 0.2711 T12: 0.1098 REMARK 3 T13: 0.0271 T23: 0.0988 REMARK 3 L TENSOR REMARK 3 L11: 0.0290 L22: 0.1581 REMARK 3 L33: -0.0209 L12: 0.0467 REMARK 3 L13: 0.0578 L23: -0.0241 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.4438 S13: 0.4845 REMARK 3 S21: -0.2057 S22: -0.0341 S23: 0.0153 REMARK 3 S31: -0.1891 S32: -0.0954 S33: -0.0105 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45288 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 28.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INTERNAL REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-26% PEG20K, 0.1M MES PH 6.1, 2-4% REMARK 280 ETHYLENE GLYCOL, 4 DAYS, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.93950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.71300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.93950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.71300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 700 REMARK 465 LYS A 879 REMARK 465 GLU B 756 REMARK 465 SER B 757 REMARK 465 GLN B 758 REMARK 465 SER B 759 REMARK 465 ARG B 803 REMARK 465 GLU B 804 REMARK 465 GLY B 805 REMARK 465 GLU B 876 REMARK 465 THR B 877 REMARK 465 SER B 878 REMARK 465 LYS B 879 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 736 CG OD1 ND2 REMARK 470 LYS A 737 CG CD CE NZ REMARK 470 GLN A 807 CG CD OE1 NE2 REMARK 470 SER A 878 CA C O CB OG REMARK 470 GLU B 700 CG CD OE1 OE2 REMARK 470 LYS B 710 CD CE NZ REMARK 470 PRO B 755 C O REMARK 470 TYR B 800 CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 806 OG REMARK 470 GLN B 807 CG CD OE1 NE2 REMARK 470 LYS B 845 CD CE NZ REMARK 470 GLU B 850 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 829 O HOH A 1001 2.11 REMARK 500 OH TYR B 801 O HOH B 1001 2.12 REMARK 500 OD1 ASP B 718 O HOH B 1002 2.19 REMARK 500 O HOH A 1119 O HOH A 1200 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 849 -105.44 52.89 REMARK 500 CYS B 754 82.38 56.91 REMARK 500 TYR B 801 -128.40 -117.17 REMARK 500 ARG B 849 -100.80 41.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1194 DISTANCE = 6.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 705 SG REMARK 620 2 CYS A 708 SG 110.9 REMARK 620 3 HIS A 725 ND1 102.4 94.3 REMARK 620 4 CYS A 728 SG 110.6 120.1 116.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 717 SG REMARK 620 2 CYS A 720 SG 108.6 REMARK 620 3 CYS A 742 SG 110.5 107.5 REMARK 620 4 CYS A 745 SG 104.2 107.0 118.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 705 SG REMARK 620 2 CYS B 708 SG 112.3 REMARK 620 3 HIS B 725 ND1 104.4 95.9 REMARK 620 4 CYS B 728 SG 110.1 116.2 116.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 717 SG REMARK 620 2 CYS B 720 SG 111.6 REMARK 620 3 CYS B 742 SG 109.2 108.8 REMARK 620 4 CYS B 745 SG 106.3 103.2 117.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ENK A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5PWC RELATED DB: PDB REMARK 900 SAME PROTEIN, SAME METHOD DBREF 6G5N A 700 879 UNP P23497 SP100_HUMAN 700 879 DBREF 6G5N B 700 879 UNP P23497 SP100_HUMAN 700 879 SEQRES 1 A 180 GLU ASN SER ASN ILE CYS GLU VAL CYS ASN LYS TRP GLY SEQRES 2 A 180 ARG LEU PHE CYS CYS ASP THR CYS PRO ARG SER PHE HIS SEQRES 3 A 180 GLU HIS CYS HIS ILE PRO SER VAL GLU ALA ASN LYS ASN SEQRES 4 A 180 PRO TRP SER CYS ILE PHE CYS ARG ILE LYS THR ILE GLN SEQRES 5 A 180 GLU ARG CYS PRO GLU SER GLN SER GLY HIS GLN GLU SER SEQRES 6 A 180 GLU VAL LEU MET ARG GLN MET LEU PRO GLU GLU GLN LEU SEQRES 7 A 180 LYS CYS GLU PHE LEU LEU LEU LYS VAL TYR CYS ASP SER SEQRES 8 A 180 LYS SER CYS PHE PHE ALA SER GLU PRO TYR TYR ASN ARG SEQRES 9 A 180 GLU GLY SER GLN GLY PRO GLN LYS PRO MET TRP LEU ASN SEQRES 10 A 180 LYS VAL LYS THR SER LEU ASN GLU GLN MET TYR THR ARG SEQRES 11 A 180 VAL GLU GLY PHE VAL GLN ASP MET ARG LEU ILE PHE HIS SEQRES 12 A 180 ASN HIS LYS GLU PHE TYR ARG GLU ASP LYS PHE THR ARG SEQRES 13 A 180 LEU GLY ILE GLN VAL GLN ASP ILE PHE GLU LYS ASN PHE SEQRES 14 A 180 ARG ASN ILE PHE ALA ILE GLN GLU THR SER LYS SEQRES 1 B 180 GLU ASN SER ASN ILE CYS GLU VAL CYS ASN LYS TRP GLY SEQRES 2 B 180 ARG LEU PHE CYS CYS ASP THR CYS PRO ARG SER PHE HIS SEQRES 3 B 180 GLU HIS CYS HIS ILE PRO SER VAL GLU ALA ASN LYS ASN SEQRES 4 B 180 PRO TRP SER CYS ILE PHE CYS ARG ILE LYS THR ILE GLN SEQRES 5 B 180 GLU ARG CYS PRO GLU SER GLN SER GLY HIS GLN GLU SER SEQRES 6 B 180 GLU VAL LEU MET ARG GLN MET LEU PRO GLU GLU GLN LEU SEQRES 7 B 180 LYS CYS GLU PHE LEU LEU LEU LYS VAL TYR CYS ASP SER SEQRES 8 B 180 LYS SER CYS PHE PHE ALA SER GLU PRO TYR TYR ASN ARG SEQRES 9 B 180 GLU GLY SER GLN GLY PRO GLN LYS PRO MET TRP LEU ASN SEQRES 10 B 180 LYS VAL LYS THR SER LEU ASN GLU GLN MET TYR THR ARG SEQRES 11 B 180 VAL GLU GLY PHE VAL GLN ASP MET ARG LEU ILE PHE HIS SEQRES 12 B 180 ASN HIS LYS GLU PHE TYR ARG GLU ASP LYS PHE THR ARG SEQRES 13 B 180 LEU GLY ILE GLN VAL GLN ASP ILE PHE GLU LYS ASN PHE SEQRES 14 B 180 ARG ASN ILE PHE ALA ILE GLN GLU THR SER LYS HET ZN A 901 1 HET ZN A 902 1 HET MES A 903 12 HET EDO A 904 4 HET EDO A 905 4 HET ENK A 906 22 HET ZN B 901 1 HET ZN B 902 1 HET EDO B 903 4 HET EDO B 904 4 HET CL B 905 1 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM ENK (3-PHENYL-1,2,4-OXADIAZOL-5-YL)METHANAMINE HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 MES C6 H13 N O4 S FORMUL 6 EDO 4(C2 H6 O2) FORMUL 8 ENK C9 H9 N3 O FORMUL 13 CL CL 1- FORMUL 14 HOH *432(H2 O) HELIX 1 AA1 CYS A 742 CYS A 754 1 13 HELIX 2 AA2 PRO A 755 SER A 759 5 5 HELIX 3 AA3 GLN A 762 MET A 768 1 7 HELIX 4 AA4 LEU A 772 CYS A 788 1 17 HELIX 5 AA5 ASP A 789 LYS A 791 5 3 HELIX 6 AA6 SER A 792 SER A 797 1 6 HELIX 7 AA7 TRP A 814 GLU A 824 1 11 HELIX 8 AA8 ARG A 829 ARG A 849 1 21 HELIX 9 AA9 PHE A 853 PHE A 872 1 20 HELIX 10 AB1 CYS B 742 ARG B 753 1 12 HELIX 11 AB2 GLN B 762 MET B 768 1 7 HELIX 12 AB3 LEU B 772 CYS B 788 1 17 HELIX 13 AB4 ASP B 789 LYS B 791 5 3 HELIX 14 AB5 SER B 792 SER B 797 1 6 HELIX 15 AB6 TRP B 814 GLU B 824 1 11 HELIX 16 AB7 ARG B 829 ARG B 849 1 21 HELIX 17 AB8 PHE B 853 PHE B 872 1 20 SHEET 1 AA1 2 LEU A 714 CYS A 716 0 SHEET 2 AA1 2 SER A 723 HIS A 725 -1 O PHE A 724 N PHE A 715 SHEET 1 AA2 2 LEU B 714 CYS B 716 0 SHEET 2 AA2 2 SER B 723 HIS B 725 -1 O PHE B 724 N PHE B 715 LINK SG CYS A 705 ZN ZN A 901 1555 1555 2.35 LINK SG CYS A 708 ZN ZN A 901 1555 1555 2.29 LINK SG CYS A 717 ZN ZN A 902 1555 1555 2.32 LINK SG CYS A 720 ZN ZN A 902 1555 1555 2.25 LINK ND1 HIS A 725 ZN ZN A 901 1555 1555 2.22 LINK SG CYS A 728 ZN ZN A 901 1555 1555 2.24 LINK SG CYS A 742 ZN ZN A 902 1555 1555 2.44 LINK SG CYS A 745 ZN ZN A 902 1555 1555 2.41 LINK SG CYS B 705 ZN ZN B 901 1555 1555 2.35 LINK SG CYS B 708 ZN ZN B 901 1555 1555 2.28 LINK SG CYS B 717 ZN ZN B 902 1555 1555 2.34 LINK SG CYS B 720 ZN ZN B 902 1555 1555 2.29 LINK ND1 HIS B 725 ZN ZN B 901 1555 1555 2.08 LINK SG CYS B 728 ZN ZN B 901 1555 1555 2.28 LINK SG CYS B 742 ZN ZN B 902 1555 1555 2.33 LINK SG CYS B 745 ZN ZN B 902 1555 1555 2.36 CISPEP 1 ILE A 730 PRO A 731 0 -8.06 CISPEP 2 ASN A 738 PRO A 739 0 -5.13 CISPEP 3 ILE B 730 PRO B 731 0 -9.01 CISPEP 4 ASN B 738 PRO B 739 0 -0.23 SITE 1 AC1 4 CYS A 705 CYS A 708 HIS A 725 CYS A 728 SITE 1 AC2 4 CYS A 717 CYS A 720 CYS A 742 CYS A 745 SITE 1 AC3 8 ASN A 802 ARG A 803 HOH A1041 ARG B 753 SITE 2 AC3 8 PRO B 773 GLU B 774 EDO B 903 HOH B1101 SITE 1 AC4 3 GLU A 763 HOH A1082 HOH A1192 SITE 1 AC5 5 PHE A 794 HIS A 844 TYR A 848 HOH A1005 SITE 2 AC5 5 HOH A1095 SITE 1 AC6 4 GLN A 751 SER A 757 GLN A 758 ASN A 870 SITE 1 AC7 4 CYS B 705 CYS B 708 HIS B 725 CYS B 728 SITE 1 AC8 4 CYS B 717 CYS B 720 CYS B 742 CYS B 745 SITE 1 AC9 5 MES A 903 ARG B 746 ILE B 750 HOH B1013 SITE 2 AC9 5 HOH B1038 SITE 1 AD1 4 PHE B 744 ILE B 747 GLN B 751 PHE B 781 SITE 1 AD2 5 THR B 828 ARG B 829 GLY B 832 HOH B1144 SITE 2 AD2 5 HOH B1188 CRYST1 127.879 45.426 83.477 90.00 102.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007820 0.000000 0.001683 0.00000 SCALE2 0.000000 0.022014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012254 0.00000