HEADER OXIDOREDUCTASE 29-MAR-18 6G5O TITLE THE STRUCTURE OF A CARBOHYDRATE ACTIVE P450 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: P450ZOGA; COMPND 5 EC: 1.14.15.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOBELLIA GALACTANIVORANS; SOURCE 3 ORGANISM_TAXID: 63186; SOURCE 4 GENE: CYPA, ZOBELLIA_4677; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS P450, MONOOXYGENASE, CARBOHYDRATE-ACTIVE ENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.ROBB,J.H.HEHEMANN REVDAT 3 17-JAN-24 6G5O 1 LINK REVDAT 2 26-DEC-18 6G5O 1 SOURCE JRNL REVDAT 1 21-NOV-18 6G5O 0 JRNL AUTH C.S.ROBB,L.REISKY,U.T.BORNSCHEUER,J.H.HEHEMANN JRNL TITL SPECIFICITY AND MECHANISM OF CARBOHYDRATE DEMETHYLATION BY JRNL TITL 2 CYTOCHROME P450 MONOOXYGENASES. JRNL REF BIOCHEM. J. V. 475 3875 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 30404923 JRNL DOI 10.1042/BCJ20180762 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0218 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 39595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5906 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.304 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.806 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6142 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5572 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8362 ; 1.556 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12885 ; 0.865 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 745 ; 5.976 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 301 ;32.189 ;24.086 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1012 ;14.911 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;18.247 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 922 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6874 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1272 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2986 ; 2.832 ; 3.581 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2985 ; 2.831 ; 3.580 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3726 ; 4.168 ; 5.356 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3727 ; 4.168 ; 5.356 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3156 ; 3.328 ; 3.838 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3154 ; 3.328 ; 3.839 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4635 ; 5.237 ; 5.619 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6763 ; 6.835 ;40.753 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6735 ; 6.832 ;40.739 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 385 B 2 385 11925 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 99.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80900 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5L90, 4UBS, 1CL6 AND 3EJD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 150 MM NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.64000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.86400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.07600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 99.86400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.64000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.07600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 155 REMARK 465 VAL A 156 REMARK 465 PHE A 157 REMARK 465 ARG A 158 REMARK 465 SER A 159 REMARK 465 GLU A 160 REMARK 465 GLY A 161 REMARK 465 GLU A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 ASP A 165 REMARK 465 GLY A 166 REMARK 465 THR A 386 REMARK 465 LYS A 387 REMARK 465 LEU A 388 REMARK 465 ALA A 389 REMARK 465 ALA A 390 REMARK 465 ALA A 391 REMARK 465 LEU A 392 REMARK 465 GLU A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 MET B 1 REMARK 465 THR B 154 REMARK 465 HIS B 155 REMARK 465 VAL B 156 REMARK 465 PHE B 157 REMARK 465 ARG B 158 REMARK 465 SER B 159 REMARK 465 GLU B 160 REMARK 465 GLY B 161 REMARK 465 GLU B 162 REMARK 465 THR B 386 REMARK 465 LYS B 387 REMARK 465 LEU B 388 REMARK 465 ALA B 389 REMARK 465 ALA B 390 REMARK 465 ALA B 391 REMARK 465 LEU B 392 REMARK 465 GLU B 393 REMARK 465 HIS B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS A 12 CE NZ REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ASN A 23 CG OD1 ND2 REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 LYS A 36 CD CE NZ REMARK 470 LYS A 40 CD CE NZ REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 LYS A 92 CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 THR A 154 OG1 CG2 REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 GLU A 244 CD OE1 OE2 REMARK 470 LYS A 248 CD CE NZ REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 ASP A 288 CG OD1 OD2 REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 LEU A 385 CG CD1 CD2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 LYS B 17 CE NZ REMARK 470 LYS B 36 CD CE NZ REMARK 470 LYS B 40 CD CE NZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 LYS B 92 CE NZ REMARK 470 LEU B 164 CG CD1 CD2 REMARK 470 LYS B 286 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 84 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 126 -61.38 -121.92 REMARK 500 ARG A 222 -70.74 -82.34 REMARK 500 SER A 265 61.48 35.97 REMARK 500 GLU A 282 19.26 59.33 REMARK 500 SER A 326 -136.80 62.57 REMARK 500 ASP A 358 144.88 -179.06 REMARK 500 ASP A 367 -104.40 64.57 REMARK 500 ARG B 222 -71.45 -81.95 REMARK 500 SER B 265 62.77 36.36 REMARK 500 PRO B 319 49.47 -82.64 REMARK 500 SER B 326 -135.70 60.49 REMARK 500 ASP B 358 137.06 -179.34 REMARK 500 ASP B 367 -103.12 62.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 330 SG REMARK 620 2 HEM A 401 NA 94.6 REMARK 620 3 HEM A 401 NB 84.3 88.9 REMARK 620 4 HEM A 401 NC 84.1 174.6 85.7 REMARK 620 5 HEM A 401 ND 96.3 92.3 178.7 93.1 REMARK 620 6 HOH A 543 O 167.2 85.6 82.9 94.5 96.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 330 SG REMARK 620 2 HEM B 401 NA 95.6 REMARK 620 3 HEM B 401 NB 83.3 88.6 REMARK 620 4 HEM B 401 NC 87.7 174.2 87.1 REMARK 620 5 HEM B 401 ND 96.7 93.0 178.4 91.3 REMARK 620 6 HOH B 558 O 175.3 83.6 92.1 92.7 88.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 401 DBREF 6G5O A 1 387 UNP G0L713 G0L713_ZOBGA 1 387 DBREF 6G5O B 1 387 UNP G0L713 G0L713_ZOBGA 1 387 SEQADV 6G5O LEU A 388 UNP G0L713 EXPRESSION TAG SEQADV 6G5O ALA A 389 UNP G0L713 EXPRESSION TAG SEQADV 6G5O ALA A 390 UNP G0L713 EXPRESSION TAG SEQADV 6G5O ALA A 391 UNP G0L713 EXPRESSION TAG SEQADV 6G5O LEU A 392 UNP G0L713 EXPRESSION TAG SEQADV 6G5O GLU A 393 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS A 394 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS A 395 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS A 396 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS A 397 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS A 398 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS A 399 UNP G0L713 EXPRESSION TAG SEQADV 6G5O LEU B 388 UNP G0L713 EXPRESSION TAG SEQADV 6G5O ALA B 389 UNP G0L713 EXPRESSION TAG SEQADV 6G5O ALA B 390 UNP G0L713 EXPRESSION TAG SEQADV 6G5O ALA B 391 UNP G0L713 EXPRESSION TAG SEQADV 6G5O LEU B 392 UNP G0L713 EXPRESSION TAG SEQADV 6G5O GLU B 393 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS B 394 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS B 395 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS B 396 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS B 397 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS B 398 UNP G0L713 EXPRESSION TAG SEQADV 6G5O HIS B 399 UNP G0L713 EXPRESSION TAG SEQRES 1 A 399 MET LYS LYS SER GLU LEU PRO ASP PRO PHE GLU LYS ALA SEQRES 2 A 399 ARG GLU SER LYS GLY TYR GLY GLU MET ASN ASP GLN ASP SEQRES 3 A 399 ASP PRO VAL THR MET LEU LEU ARG HIS LYS ASP VAL ARG SEQRES 4 A 399 LYS SER ALA HIS ASN TYR LYS THR PHE GLN SER GLY ALA SEQRES 5 A 399 VAL PRO GLY ARG ILE VAL ILE PRO SER GLU VAL ASP ILE SEQRES 6 A 399 ARG ASP THR ARG GLN ILE PRO PHE GLU VAL ASP PRO PRO SEQRES 7 A 399 VAL HIS GLY VAL TYR ARG ALA ILE VAL GLU PRO TRP PHE SEQRES 8 A 399 LYS ARG PRO LEU GLN ALA GLU TYR GLN GLU LYS LEU THR SEQRES 9 A 399 ALA GLN ILE SER GLU ILE VAL GLU GLU THR LEU LEU LYS SEQRES 10 A 399 GLY SER VAL GLU VAL VAL THR ASP PHE ALA LEU ARG LEU SEQRES 11 A 399 GLN SER ARG ALA LEU THR LEU LEU LEU ASN THR PRO PHE SEQRES 12 A 399 SER GLU SER GLU THR TRP ILE SER TRP GLY THR HIS VAL SEQRES 13 A 399 PHE ARG SER GLU GLY GLU ALA LEU ASP GLY ASP LYS ALA SEQRES 14 A 399 ASN ILE LEU TYR HIS TYR ILE ASP GLU GLN ILE ASP ARG SEQRES 15 A 399 ALA SER GLU ASN PRO GLY ASP ASP MET TYR SER VAL LEU SEQRES 16 A 399 LEU ASN SER GLU PHE GLU GLY ARG LYS LEU THR LYS GLU SEQRES 17 A 399 GLU VAL LYS GLY VAL MET VAL LEU THR PHE ALA GLY GLY SEQRES 18 A 399 ARG ASP THR VAL ILE ASN ALA VAL THR ASN SER ILE ALA SEQRES 19 A 399 TYR LEU ALA GLU HIS PRO GLU ALA LEU GLU ARG LEU ARG SEQRES 20 A 399 LYS GLU PRO GLU ILE THR GLY ARG ALA VAL GLU GLU MET SEQRES 21 A 399 ILE ARG TYR PHE SER PRO LEU THR GLN MET GLY ARG VAL SEQRES 22 A 399 VAL THR GLU ASP THR HIS VAL CYS GLU HIS ALA VAL LYS SEQRES 23 A 399 ALA ASP SER ARG ILE SER LEU CYS TRP ALA SER ALA ASN SEQRES 24 A 399 ARG ASP ALA ALA VAL PHE GLU ASN PRO ASN GLU ILE VAL SEQRES 25 A 399 LEU ASP ARG LYS VAL ASN PRO HIS VAL GLY PHE GLY PHE SEQRES 26 A 399 SER HIS HIS ASN CYS LEU GLY ALA THR HIS ALA ARG GLN SEQRES 27 A 399 ILE LEU LYS ILE LEU LEU GLN THR LEU ALA GLN LYS VAL SEQRES 28 A 399 ALA SER PHE GLU ILE LEU ASP TYR LYS GLU ASN ILE GLU SEQRES 29 A 399 ASP LEU ASP HIS PHE GLN ARG LYS VAL GLY PHE HIS ASN SEQRES 30 A 399 ILE GLN ILE LYS PHE ASN PRO LEU THR LYS LEU ALA ALA SEQRES 31 A 399 ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 399 MET LYS LYS SER GLU LEU PRO ASP PRO PHE GLU LYS ALA SEQRES 2 B 399 ARG GLU SER LYS GLY TYR GLY GLU MET ASN ASP GLN ASP SEQRES 3 B 399 ASP PRO VAL THR MET LEU LEU ARG HIS LYS ASP VAL ARG SEQRES 4 B 399 LYS SER ALA HIS ASN TYR LYS THR PHE GLN SER GLY ALA SEQRES 5 B 399 VAL PRO GLY ARG ILE VAL ILE PRO SER GLU VAL ASP ILE SEQRES 6 B 399 ARG ASP THR ARG GLN ILE PRO PHE GLU VAL ASP PRO PRO SEQRES 7 B 399 VAL HIS GLY VAL TYR ARG ALA ILE VAL GLU PRO TRP PHE SEQRES 8 B 399 LYS ARG PRO LEU GLN ALA GLU TYR GLN GLU LYS LEU THR SEQRES 9 B 399 ALA GLN ILE SER GLU ILE VAL GLU GLU THR LEU LEU LYS SEQRES 10 B 399 GLY SER VAL GLU VAL VAL THR ASP PHE ALA LEU ARG LEU SEQRES 11 B 399 GLN SER ARG ALA LEU THR LEU LEU LEU ASN THR PRO PHE SEQRES 12 B 399 SER GLU SER GLU THR TRP ILE SER TRP GLY THR HIS VAL SEQRES 13 B 399 PHE ARG SER GLU GLY GLU ALA LEU ASP GLY ASP LYS ALA SEQRES 14 B 399 ASN ILE LEU TYR HIS TYR ILE ASP GLU GLN ILE ASP ARG SEQRES 15 B 399 ALA SER GLU ASN PRO GLY ASP ASP MET TYR SER VAL LEU SEQRES 16 B 399 LEU ASN SER GLU PHE GLU GLY ARG LYS LEU THR LYS GLU SEQRES 17 B 399 GLU VAL LYS GLY VAL MET VAL LEU THR PHE ALA GLY GLY SEQRES 18 B 399 ARG ASP THR VAL ILE ASN ALA VAL THR ASN SER ILE ALA SEQRES 19 B 399 TYR LEU ALA GLU HIS PRO GLU ALA LEU GLU ARG LEU ARG SEQRES 20 B 399 LYS GLU PRO GLU ILE THR GLY ARG ALA VAL GLU GLU MET SEQRES 21 B 399 ILE ARG TYR PHE SER PRO LEU THR GLN MET GLY ARG VAL SEQRES 22 B 399 VAL THR GLU ASP THR HIS VAL CYS GLU HIS ALA VAL LYS SEQRES 23 B 399 ALA ASP SER ARG ILE SER LEU CYS TRP ALA SER ALA ASN SEQRES 24 B 399 ARG ASP ALA ALA VAL PHE GLU ASN PRO ASN GLU ILE VAL SEQRES 25 B 399 LEU ASP ARG LYS VAL ASN PRO HIS VAL GLY PHE GLY PHE SEQRES 26 B 399 SER HIS HIS ASN CYS LEU GLY ALA THR HIS ALA ARG GLN SEQRES 27 B 399 ILE LEU LYS ILE LEU LEU GLN THR LEU ALA GLN LYS VAL SEQRES 28 B 399 ALA SER PHE GLU ILE LEU ASP TYR LYS GLU ASN ILE GLU SEQRES 29 B 399 ASP LEU ASP HIS PHE GLN ARG LYS VAL GLY PHE HIS ASN SEQRES 30 B 399 ILE GLN ILE LYS PHE ASN PRO LEU THR LYS LEU ALA ALA SEQRES 31 B 399 ALA LEU GLU HIS HIS HIS HIS HIS HIS HET HEM A 401 43 HET HEM B 401 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *193(H2 O) HELIX 1 AA1 PHE A 10 LYS A 17 1 8 HELIX 2 AA2 ARG A 34 ASN A 44 1 11 HELIX 3 AA3 PRO A 78 ARG A 93 1 16 HELIX 4 AA4 GLN A 96 GLY A 118 1 23 HELIX 5 AA5 VAL A 122 PHE A 126 1 5 HELIX 6 AA6 PHE A 126 ASN A 140 1 15 HELIX 7 AA7 SER A 144 GLY A 153 1 10 HELIX 8 AA8 LYS A 168 ASN A 186 1 19 HELIX 9 AA9 ASP A 190 ASN A 197 1 8 HELIX 10 AB1 THR A 206 GLY A 221 1 16 HELIX 11 AB2 ARG A 222 HIS A 239 1 18 HELIX 12 AB3 HIS A 239 GLU A 249 1 11 HELIX 13 AB4 ILE A 252 SER A 265 1 14 HELIX 14 AB5 CYS A 294 ASN A 299 1 6 HELIX 15 AB6 PHE A 325 ASN A 329 5 5 HELIX 16 AB7 GLY A 332 LYS A 350 1 19 HELIX 17 AB8 PHE B 10 LYS B 17 1 8 HELIX 18 AB9 ARG B 34 ASN B 44 1 11 HELIX 19 AC1 PRO B 78 LYS B 92 1 15 HELIX 20 AC2 ARG B 93 LEU B 95 5 3 HELIX 21 AC3 GLN B 96 GLY B 118 1 23 HELIX 22 AC4 VAL B 122 PHE B 126 1 5 HELIX 23 AC5 PHE B 126 ASN B 140 1 15 HELIX 24 AC6 SER B 144 GLY B 153 1 10 HELIX 25 AC7 ASP B 165 ASN B 186 1 22 HELIX 26 AC8 ASP B 190 ASN B 197 1 8 HELIX 27 AC9 THR B 206 GLY B 221 1 16 HELIX 28 AD1 ARG B 222 HIS B 239 1 18 HELIX 29 AD2 HIS B 239 GLU B 249 1 11 HELIX 30 AD3 ILE B 252 SER B 265 1 14 HELIX 31 AD4 CYS B 294 ASN B 299 1 6 HELIX 32 AD5 PHE B 325 ASN B 329 5 5 HELIX 33 AD6 CYS B 330 LEU B 331 5 2 HELIX 34 AD7 GLY B 332 LYS B 350 1 19 SHEET 1 AA1 5 TYR A 19 MET A 22 0 SHEET 2 AA1 5 VAL A 29 LEU A 32 -1 O VAL A 29 N MET A 22 SHEET 3 AA1 5 ARG A 290 LEU A 293 1 O SER A 292 N LEU A 32 SHEET 4 AA1 5 MET A 270 VAL A 274 -1 N MET A 270 O LEU A 293 SHEET 5 AA1 5 PHE A 48 GLN A 49 -1 N GLN A 49 O VAL A 273 SHEET 1 AA2 3 SER A 119 GLU A 121 0 SHEET 2 AA2 3 PHE A 369 PRO A 384 -1 O ILE A 380 N VAL A 120 SHEET 3 AA2 3 VAL A 351 LEU A 366 -1 N ASP A 358 O GLN A 379 SHEET 1 AA3 2 GLU A 199 PHE A 200 0 SHEET 2 AA3 2 ARG A 203 LYS A 204 -1 O ARG A 203 N PHE A 200 SHEET 1 AA4 2 THR A 278 VAL A 280 0 SHEET 2 AA4 2 HIS A 283 VAL A 285 -1 O VAL A 285 N THR A 278 SHEET 1 AA5 5 TYR B 19 MET B 22 0 SHEET 2 AA5 5 VAL B 29 LEU B 32 -1 O VAL B 29 N MET B 22 SHEET 3 AA5 5 ARG B 290 LEU B 293 1 O SER B 292 N LEU B 32 SHEET 4 AA5 5 MET B 270 VAL B 274 -1 N MET B 270 O LEU B 293 SHEET 5 AA5 5 PHE B 48 GLN B 49 -1 N GLN B 49 O VAL B 273 SHEET 1 AA6 3 SER B 119 GLU B 121 0 SHEET 2 AA6 3 PHE B 369 PRO B 384 -1 O ILE B 380 N VAL B 120 SHEET 3 AA6 3 VAL B 351 LEU B 366 -1 N GLU B 364 O ARG B 371 SHEET 1 AA7 2 GLU B 199 PHE B 200 0 SHEET 2 AA7 2 ARG B 203 LYS B 204 -1 O ARG B 203 N PHE B 200 SHEET 1 AA8 2 THR B 278 VAL B 280 0 SHEET 2 AA8 2 HIS B 283 VAL B 285 -1 O VAL B 285 N THR B 278 LINK SG CYS A 330 FE HEM A 401 1555 1555 2.31 LINK FE HEM A 401 O HOH A 543 1555 1555 2.25 LINK SG CYS B 330 FE HEM B 401 1555 1555 2.30 LINK FE HEM B 401 O HOH B 558 1555 1555 2.40 CISPEP 1 ILE A 59 PRO A 60 0 4.12 CISPEP 2 ILE A 71 PRO A 72 0 6.76 CISPEP 3 PRO A 77 PRO A 78 0 -2.86 CISPEP 4 ILE B 59 PRO B 60 0 3.78 CISPEP 5 ILE B 71 PRO B 72 0 8.41 CISPEP 6 PRO B 77 PRO B 78 0 0.22 SITE 1 AC1 22 PRO A 72 PHE A 73 HIS A 80 ARG A 84 SITE 2 AC1 22 LEU A 138 LEU A 216 THR A 217 GLY A 220 SITE 3 AC1 22 GLY A 221 THR A 224 LEU A 267 MET A 270 SITE 4 AC1 22 ARG A 272 TRP A 295 GLY A 322 GLY A 324 SITE 5 AC1 22 HIS A 328 CYS A 330 GLY A 332 HOH A 520 SITE 6 AC1 22 HOH A 542 HOH A 543 SITE 1 AC2 23 PRO B 72 PHE B 73 HIS B 80 ARG B 84 SITE 2 AC2 23 LEU B 138 LEU B 216 THR B 217 GLY B 220 SITE 3 AC2 23 GLY B 221 THR B 224 VAL B 225 MET B 270 SITE 4 AC2 23 ARG B 272 TRP B 295 GLY B 322 PHE B 323 SITE 5 AC2 23 GLY B 324 HIS B 328 CYS B 330 GLY B 332 SITE 6 AC2 23 HOH B 521 HOH B 532 HOH B 558 CRYST1 63.280 68.152 199.728 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015803 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005007 0.00000