HEADER TRANSCRIPTION 29-MAR-18 6G5P TITLE CRYSTAL STRUCTURE OF HUMAN SP100 IN COMPLEX WITH BROMODOMAIN-FOCUSED TITLE 2 FRAGMENT FM009493B 2,3-DIMETHOXY-2,3-DIMETHYL-2,3-DIHYDRO-1,4- TITLE 3 BENZODIOXIN-6-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR AUTOANTIGEN SP-100; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEAR DOT-ASSOCIATED SP100 PROTEIN,SPECKLED 100 KDA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: SP100C; SOURCE 6 GENE: SP100; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS FRAGMENT SCREENING, EPIGENETICS, BROMODOMAIN, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, XCHEM, DIAMOND I04-1, PANDDA, XCHEMEXPLORER, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.P.H.TALON,T.KROJER,C.TALLANT,G.NUNEZ-ALONSO,M.FAIRHEAD,A.SZYKOWSKA, AUTHOR 2 P.COLLINS,N.M.PEARCE,J.NG,E.MACLEAN,N.WRIGHT,A.DOUANGAMATH, AUTHOR 3 J.BRANDAO-NETO,N.BURGESS-BROWN,K.HUBER,S.KNAPP,P.E.BRENNAN, AUTHOR 4 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,F.VON DELFT REVDAT 2 01-MAY-24 6G5P 1 COMPND JRNL HETNAM REVDAT 1 11-APR-18 6G5P 0 JRNL AUTH R.P.H.TALON,D.BOWKETT,C.TALLANT,C.SCHOFIELD,F.VON DELFT, JRNL AUTH 2 S.KNAPP,G.BRUTON,P.E.BRENNAN JRNL TITL IDENTIFYING SMALL MOLECULE BINDING SITES FOR EPIGENETIC JRNL TITL 2 PROTEINS AT DOMAIN-DOMAIN INTERFACES JRNL REF BIORXIV 2018 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/283069 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1682 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 101332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 5097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5955 - 4.1865 0.94 3260 146 0.1535 0.1813 REMARK 3 2 4.1865 - 3.3246 0.95 3242 145 0.1351 0.1885 REMARK 3 3 3.3246 - 2.9048 0.97 3212 173 0.1528 0.1858 REMARK 3 4 2.9048 - 2.6394 0.99 3271 177 0.1405 0.1628 REMARK 3 5 2.6394 - 2.4503 0.99 3287 171 0.1351 0.1798 REMARK 3 6 2.4503 - 2.3059 0.95 3117 185 0.1281 0.1720 REMARK 3 7 2.3059 - 2.1905 0.93 3064 151 0.1363 0.1591 REMARK 3 8 2.1905 - 2.0952 0.98 3227 175 0.1193 0.1417 REMARK 3 9 2.0952 - 2.0145 0.98 3273 163 0.1169 0.1595 REMARK 3 10 2.0145 - 1.9450 0.99 3230 156 0.1161 0.1411 REMARK 3 11 1.9450 - 1.8842 0.97 3199 174 0.1406 0.1811 REMARK 3 12 1.8842 - 1.8304 1.00 3252 168 0.1081 0.1673 REMARK 3 13 1.8304 - 1.7822 1.00 3294 176 0.1022 0.1460 REMARK 3 14 1.7822 - 1.7387 1.00 3227 176 0.1005 0.1345 REMARK 3 15 1.7387 - 1.6992 0.99 3268 173 0.1017 0.1346 REMARK 3 16 1.6992 - 1.6631 0.98 3205 193 0.1047 0.1489 REMARK 3 17 1.6631 - 1.6298 0.90 2948 167 0.1048 0.1536 REMARK 3 18 1.6298 - 1.5990 0.97 3176 167 0.1086 0.1404 REMARK 3 19 1.5990 - 1.5705 0.99 3202 172 0.1079 0.1468 REMARK 3 20 1.5705 - 1.5439 0.99 3223 188 0.1223 0.1512 REMARK 3 21 1.5439 - 1.5190 0.99 3241 185 0.1333 0.1878 REMARK 3 22 1.5190 - 1.4956 1.00 3260 173 0.1416 0.2099 REMARK 3 23 1.4956 - 1.4736 0.99 3227 165 0.1568 0.1996 REMARK 3 24 1.4736 - 1.4528 0.99 3285 163 0.1729 0.2132 REMARK 3 25 1.4528 - 1.4332 1.00 3248 176 0.1793 0.2424 REMARK 3 26 1.4332 - 1.4146 0.99 3221 167 0.2027 0.2239 REMARK 3 27 1.4146 - 1.3969 1.00 3272 187 0.2115 0.2352 REMARK 3 28 1.3969 - 1.3801 0.99 3205 168 0.2272 0.2312 REMARK 3 29 1.3801 - 1.3640 0.99 3267 169 0.2387 0.2857 REMARK 3 30 1.3640 - 1.3487 0.86 2832 148 0.2780 0.3210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3145 REMARK 3 ANGLE : 1.402 4258 REMARK 3 CHIRALITY : 0.228 433 REMARK 3 PLANARITY : 0.008 557 REMARK 3 DIHEDRAL : 14.455 1279 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6G5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101393 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 28.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INTERNAL REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-23% PEG20K, 0.1M MES 6.1, 2-4% REMARK 280 ETHYLENE GLYCOL, 4 DAYS, PH 6.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.92750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.71450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.92750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.71450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 700 REMARK 465 SER A 878 REMARK 465 LYS A 879 REMARK 465 GLU B 804 REMARK 465 GLY B 805 REMARK 465 SER B 806 REMARK 465 THR B 877 REMARK 465 SER B 878 REMARK 465 LYS B 879 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 703 OD1 ND2 REMARK 470 LYS A 737 CG CD CE NZ REMARK 470 GLU B 700 CG CD OE1 OE2 REMARK 470 LYS B 710 CE NZ REMARK 470 SER B 757 OG REMARK 470 GLN B 758 CG CD OE1 NE2 REMARK 470 SER B 759 OG REMARK 470 TYR B 800 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 803 CA C O CB CG CD NE REMARK 470 ARG B 803 CZ NH1 NH2 REMARK 470 GLN B 807 N CB CG CD OE1 NE2 REMARK 470 GLN B 810 CG CD OE1 NE2 REMARK 470 GLU B 850 CG CD OE1 OE2 REMARK 470 GLU B 876 C O CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1176 O HOH A 1205 2.02 REMARK 500 OE2 GLU A 756 O HOH A 1001 2.04 REMARK 500 O HOH A 1008 O HOH A 1244 2.07 REMARK 500 NH1 ARG A 829 O HOH A 1002 2.08 REMARK 500 NH1 ARG A 803 O HOH A 1003 2.08 REMARK 500 O HOH A 1064 O HOH A 1260 2.09 REMARK 500 SG CYS B 716 O HOH B 1156 2.11 REMARK 500 O HOH A 1027 O HOH A 1220 2.18 REMARK 500 OD1 ASP A 862 O HOH A 1004 2.18 REMARK 500 N ASN A 701 O HOH A 1005 2.18 REMARK 500 O HOH A 1048 O HOH A 1116 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1084 O HOH A 1253 1545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 829 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 735 -72.74 -48.85 REMARK 500 LYS A 737 109.25 -169.67 REMARK 500 ARG A 849 -116.47 58.35 REMARK 500 ASN B 738 113.22 -167.75 REMARK 500 CYS B 754 86.24 -151.86 REMARK 500 GLU B 756 -166.82 -126.27 REMARK 500 SER B 759 58.76 -162.91 REMARK 500 TYR B 801 -94.55 -112.98 REMARK 500 ARG B 849 -116.39 49.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1293 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B1234 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B1235 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B1236 DISTANCE = 7.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 705 SG REMARK 620 2 CYS A 708 SG 110.8 REMARK 620 3 HIS A 725 ND1 101.5 95.2 REMARK 620 4 CYS A 728 SG 111.1 119.6 116.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 717 SG REMARK 620 2 CYS A 720 SG 111.1 REMARK 620 3 CYS A 742 SG 112.7 105.9 REMARK 620 4 CYS A 745 SG 104.9 104.5 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 705 SG REMARK 620 2 CYS B 708 SG 111.8 REMARK 620 3 HIS B 725 ND1 102.5 96.8 REMARK 620 4 CYS B 728 SG 110.1 118.2 115.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 717 SG REMARK 620 2 CYS B 720 SG 112.7 REMARK 620 3 CYS B 742 SG 112.4 106.0 REMARK 620 4 CYS B 745 SG 106.3 103.1 116.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EN8 A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5PWC RELATED DB: PDB REMARK 900 SAME METHOD DBREF 6G5P A 700 879 UNP P23497 SP100_HUMAN 700 879 DBREF 6G5P B 700 879 UNP P23497 SP100_HUMAN 700 879 SEQRES 1 A 180 GLU ASN SER ASN ILE CYS GLU VAL CYS ASN LYS TRP GLY SEQRES 2 A 180 ARG LEU PHE CYS CYS ASP THR CYS PRO ARG SER PHE HIS SEQRES 3 A 180 GLU HIS CYS HIS ILE PRO SER VAL GLU ALA ASN LYS ASN SEQRES 4 A 180 PRO TRP SER CYS ILE PHE CYS ARG ILE LYS THR ILE GLN SEQRES 5 A 180 GLU ARG CYS PRO GLU SER GLN SER GLY HIS GLN GLU SER SEQRES 6 A 180 GLU VAL LEU MET ARG GLN MET LEU PRO GLU GLU GLN LEU SEQRES 7 A 180 LYS CYS GLU PHE LEU LEU LEU LYS VAL TYR CYS ASP SER SEQRES 8 A 180 LYS SER CYS PHE PHE ALA SER GLU PRO TYR TYR ASN ARG SEQRES 9 A 180 GLU GLY SER GLN GLY PRO GLN LYS PRO MET TRP LEU ASN SEQRES 10 A 180 LYS VAL LYS THR SER LEU ASN GLU GLN MET TYR THR ARG SEQRES 11 A 180 VAL GLU GLY PHE VAL GLN ASP MET ARG LEU ILE PHE HIS SEQRES 12 A 180 ASN HIS LYS GLU PHE TYR ARG GLU ASP LYS PHE THR ARG SEQRES 13 A 180 LEU GLY ILE GLN VAL GLN ASP ILE PHE GLU LYS ASN PHE SEQRES 14 A 180 ARG ASN ILE PHE ALA ILE GLN GLU THR SER LYS SEQRES 1 B 180 GLU ASN SER ASN ILE CYS GLU VAL CYS ASN LYS TRP GLY SEQRES 2 B 180 ARG LEU PHE CYS CYS ASP THR CYS PRO ARG SER PHE HIS SEQRES 3 B 180 GLU HIS CYS HIS ILE PRO SER VAL GLU ALA ASN LYS ASN SEQRES 4 B 180 PRO TRP SER CYS ILE PHE CYS ARG ILE LYS THR ILE GLN SEQRES 5 B 180 GLU ARG CYS PRO GLU SER GLN SER GLY HIS GLN GLU SER SEQRES 6 B 180 GLU VAL LEU MET ARG GLN MET LEU PRO GLU GLU GLN LEU SEQRES 7 B 180 LYS CYS GLU PHE LEU LEU LEU LYS VAL TYR CYS ASP SER SEQRES 8 B 180 LYS SER CYS PHE PHE ALA SER GLU PRO TYR TYR ASN ARG SEQRES 9 B 180 GLU GLY SER GLN GLY PRO GLN LYS PRO MET TRP LEU ASN SEQRES 10 B 180 LYS VAL LYS THR SER LEU ASN GLU GLN MET TYR THR ARG SEQRES 11 B 180 VAL GLU GLY PHE VAL GLN ASP MET ARG LEU ILE PHE HIS SEQRES 12 B 180 ASN HIS LYS GLU PHE TYR ARG GLU ASP LYS PHE THR ARG SEQRES 13 B 180 LEU GLY ILE GLN VAL GLN ASP ILE PHE GLU LYS ASN PHE SEQRES 14 B 180 ARG ASN ILE PHE ALA ILE GLN GLU THR SER LYS HET ZN A 901 1 HET ZN A 902 1 HET MES A 903 12 HET EDO A 904 4 HET EDO A 905 4 HET EDO A 906 4 HET EN8 A 907 34 HET ZN B 901 1 HET ZN B 902 1 HET EDO B 903 4 HET CL B 904 1 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM EN8 (2~{R},3~{R})-2,3-DIMETHOXY-2,3-DIMETHYL-1,4- HETNAM 2 EN8 BENZODIOXIN-6-AMINE HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 MES C6 H13 N O4 S FORMUL 6 EDO 4(C2 H6 O2) FORMUL 9 EN8 C12 H17 N O4 FORMUL 13 CL CL 1- FORMUL 14 HOH *529(H2 O) HELIX 1 AA1 CYS A 742 CYS A 754 1 13 HELIX 2 AA2 PRO A 755 SER A 759 5 5 HELIX 3 AA3 GLN A 762 ARG A 769 1 8 HELIX 4 AA4 LEU A 772 CYS A 788 1 17 HELIX 5 AA5 ASP A 789 LYS A 791 5 3 HELIX 6 AA6 SER A 792 SER A 797 1 6 HELIX 7 AA7 TRP A 814 GLU A 824 1 11 HELIX 8 AA8 ARG A 829 ARG A 849 1 21 HELIX 9 AA9 PHE A 853 PHE A 872 1 20 HELIX 10 AB1 CYS B 742 ARG B 753 1 12 HELIX 11 AB2 GLN B 762 ARG B 769 1 8 HELIX 12 AB3 LEU B 772 CYS B 788 1 17 HELIX 13 AB4 ASP B 789 LYS B 791 5 3 HELIX 14 AB5 SER B 792 SER B 797 1 6 HELIX 15 AB6 TRP B 814 GLU B 824 1 11 HELIX 16 AB7 ARG B 829 ARG B 849 1 21 HELIX 17 AB8 PHE B 853 PHE B 872 1 20 SHEET 1 AA1 2 PHE A 715 CYS A 716 0 SHEET 2 AA1 2 SER A 723 PHE A 724 -1 O PHE A 724 N PHE A 715 SHEET 1 AA2 2 LEU B 714 CYS B 716 0 SHEET 2 AA2 2 SER B 723 HIS B 725 -1 O PHE B 724 N PHE B 715 LINK SG CYS A 705 ZN ZN A 901 1555 1555 2.34 LINK SG CYS A 708 ZN ZN A 901 1555 1555 2.34 LINK SG CYS A 717 ZN ZN A 902 1555 1555 2.28 LINK SG CYS A 720 ZN ZN A 902 1555 1555 2.31 LINK ND1 HIS A 725 ZN ZN A 901 1555 1555 2.11 LINK SG CYS A 728 ZN ZN A 901 1555 1555 2.29 LINK SG CYS A 742 ZN ZN A 902 1555 1555 2.34 LINK SG CYS A 745 ZN ZN A 902 1555 1555 2.36 LINK SG CYS B 705 ZN ZN B 901 1555 1555 2.35 LINK SG CYS B 708 ZN ZN B 901 1555 1555 2.30 LINK SG CYS B 717 ZN ZN B 902 1555 1555 2.31 LINK SG CYS B 720 ZN ZN B 902 1555 1555 2.33 LINK ND1 HIS B 725 ZN ZN B 901 1555 1555 2.11 LINK SG CYS B 728 ZN ZN B 901 1555 1555 2.30 LINK SG CYS B 742 ZN ZN B 902 1555 1555 2.33 LINK SG CYS B 745 ZN ZN B 902 1555 1555 2.39 CISPEP 1 ILE A 730 PRO A 731 0 -12.50 CISPEP 2 ASN A 738 PRO A 739 0 2.42 CISPEP 3 ILE B 730 PRO B 731 0 -9.76 CISPEP 4 ASN B 738 PRO B 739 0 4.72 SITE 1 AC1 4 CYS A 705 CYS A 708 HIS A 725 CYS A 728 SITE 1 AC2 4 CYS A 717 CYS A 720 CYS A 742 CYS A 745 SITE 1 AC3 11 ASN A 802 ARG A 803 TYR A 848 GLU A 876 SITE 2 AC3 11 HOH A1029 HOH A1049 HOH A1127 HOH A1152 SITE 3 AC3 11 ARG B 753 PRO B 773 GLU B 774 SITE 1 AC4 5 GLU A 763 LEU A 767 ARG A 838 HOH A1018 SITE 2 AC4 5 HOH A1106 SITE 1 AC5 5 PHE A 794 HIS A 844 TYR A 848 HOH A1020 SITE 2 AC5 5 HOH A1022 SITE 1 AC6 6 CYS A 793 SER A 797 HOH A1011 HOH A1067 SITE 2 AC6 6 HOH A1165 GLN B 770 SITE 1 AC7 11 ILE A 747 GLN A 751 PHE A 781 LYS A 785 SITE 2 AC7 11 ASN A 867 ASN A 870 HOH A1047 HOH A1083 SITE 3 AC7 11 CYS B 754 PRO B 755 GLU B 756 SITE 1 AC8 4 CYS B 705 CYS B 708 HIS B 725 CYS B 728 SITE 1 AC9 4 CYS B 717 CYS B 720 CYS B 742 CYS B 745 SITE 1 AD1 5 HOH A1036 ARG B 746 ILE B 750 HOH B1031 SITE 2 AD1 5 HOH B1113 SITE 1 AD2 3 HIS B 844 HOH B1001 HOH B1044 CRYST1 127.855 45.429 83.715 90.00 101.77 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007821 0.000000 0.001630 0.00000 SCALE2 0.000000 0.022012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012202 0.00000