HEADER METAL BINDING PROTEIN 06-APR-18 6G7Q TITLE TRICHODESMIUM TERY_3377 (IDIA) (FUTA) IN COMPLEX WITH IRON AND CITRATE TITLE 2 LIGANDS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR SOLUTE-BINDING PROTEIN, FAMILY 1; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHODESMIUM ERYTHRAEUM (STRAIN IMS101); SOURCE 3 ORGANISM_TAXID: 203124; SOURCE 4 STRAIN: IMS101; SOURCE 5 GENE: TERY_3377; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A(+) KEYWDS IRON, IDIA, FUTA, ABC-TRANSPORTER, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.M.MACHELETT,I.TEWS REVDAT 4 08-MAY-24 6G7Q 1 LINK REVDAT 3 05-DEC-18 6G7Q 1 JRNL REVDAT 2 26-SEP-18 6G7Q 1 JRNL REVDAT 1 12-SEP-18 6G7Q 0 JRNL AUTH D.POLYVIOU,M.M.MACHELETT,A.HITCHCOCK,A.J.BAYLAY,F.MACMILLAN, JRNL AUTH 2 C.M.MOORE,T.S.BIBBY,I.TEWS JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF IDIA/FUTA JRNL TITL 2 (TERY_3377), AN IRON-BINDING PROTEIN FROM THE OCEAN JRNL TITL 3 DIAZOTROPHTRICHODESMIUM ERYTHRAEUM. JRNL REF J. BIOL. CHEM. V. 293 18099 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30217820 JRNL DOI 10.1074/JBC.RA118.001929 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 181790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13467 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4885 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 852 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.538 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5327 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4970 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7258 ; 1.818 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11625 ; 1.070 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 718 ; 5.674 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;41.134 ;24.706 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 942 ;11.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.600 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 782 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6058 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1072 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10297 ; 2.887 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 565 ;27.171 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 10455 ;10.305 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 4 318 A 4 318 21918 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6G7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200008436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 183781 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.826 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.55 REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG500MME, PEG20000, SODIUM FORMATE, REMARK 280 AMMONIUM ACETATE, SODIUM CITRATE TRIBASIC DIHYDRATE, SODIUM REMARK 280 POTASSIUM TARTRATE TETRAHYDRATE, SODIUM OXAMATE, SODIUM HEPES, REMARK 280 MOPS (ACID)., PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.00500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 320 REMARK 465 GLU B 321 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 ASN B 52 CG OD1 ND2 REMARK 470 LYS B 311 CG CD CE NZ REMARK 470 LYS B 319 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LYS B 319 O3 GOL B 402 1.65 REMARK 500 O HOH A 729 O HOH A 737 2.01 REMARK 500 O HOH A 711 O HOH A 729 2.11 REMARK 500 O HOH A 651 O HOH A 686 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 905 O HOH A 539 2454 0.84 REMARK 500 O HOH B 974 O HOH A 808 2555 1.01 REMARK 500 C2 GOL B 403 O HOH A 753 2454 1.50 REMARK 500 O3 GOL B 403 O HOH A 753 2454 1.59 REMARK 500 C3 GOL B 403 O HOH A 753 2454 1.69 REMARK 500 O HOH B 807 O HOH A 725 2454 2.07 REMARK 500 C1 GOL B 403 O HOH A 753 2454 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 MET B 313 CG - SD - CE ANGL. DEV. = -23.6 DEGREES REMARK 500 ARG B 315 NE - CZ - NH1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG B 315 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 MET A 313 CG - SD - CE ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 315 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 53 133.51 -37.79 REMARK 500 ASP B 62 122.29 88.52 REMARK 500 SER B 121 -73.97 -150.53 REMARK 500 ASP A 62 122.94 85.53 REMARK 500 SER A 121 -73.93 -150.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 236 SER A 237 149.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 987 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 988 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 989 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 990 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 991 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 992 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B 993 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH B 994 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 995 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 996 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B 997 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B 998 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B 999 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B1000 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH B1001 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH B1002 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH B1003 DISTANCE = 8.50 ANGSTROMS REMARK 525 HOH B1004 DISTANCE = 8.70 ANGSTROMS REMARK 525 HOH B1005 DISTANCE = 8.98 ANGSTROMS REMARK 525 HOH B1006 DISTANCE = 11.17 ANGSTROMS REMARK 525 HOH B1007 DISTANCE = 11.32 ANGSTROMS REMARK 525 HOH B1008 DISTANCE = 12.34 ANGSTROMS REMARK 525 HOH A 841 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 842 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 843 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 844 DISTANCE = 6.65 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FLC A 402 OHB REMARK 620 2 FLC A 402 OB2 78.4 REMARK 620 3 FLC A 402 OG1 85.0 94.4 REMARK 620 4 FLC A 403 OHB 102.4 102.6 162.5 REMARK 620 5 FLC A 403 OG2 157.0 80.8 87.0 91.6 REMARK 620 6 FLC A 403 OB1 108.0 172.6 82.6 80.0 92.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 DBREF 6G7Q B 4 319 UNP Q10Z45 Q10Z45_TRIEI 34 349 DBREF 6G7Q A 4 319 UNP Q10Z45 Q10Z45_TRIEI 34 349 SEQADV 6G7Q LEU B 320 UNP Q10Z45 EXPRESSION TAG SEQADV 6G7Q GLU B 321 UNP Q10Z45 EXPRESSION TAG SEQADV 6G7Q LEU A 320 UNP Q10Z45 EXPRESSION TAG SEQADV 6G7Q GLU A 321 UNP Q10Z45 EXPRESSION TAG SEQRES 1 B 318 GLY ALA ILE ASN LEU TYR SER SER ARG HIS TYR ASP THR SEQRES 2 B 318 ASP GLN ALA LEU TYR ASP SER PHE THR LYS LYS THR GLY SEQRES 3 B 318 LEU LYS VAL ASN LEU ILE GLU GLY LYS GLY ASP LYS LEU SEQRES 4 B 318 ILE GLU ARG ILE LYS SER GLU GLY ALA ASN SER PRO ALA SEQRES 5 B 318 ASP VAL PHE MET THR VAL ASP ALA GLY ARG LEU TRP ARG SEQRES 6 B 318 ALA GLN GLU ALA GLY ILE LEU GLN PRO ILE SER SER SER SEQRES 7 B 318 THR LEU ASN ASN LYS ILE PRO ALA ASN LEU ARG SER PRO SEQRES 8 B 318 GLU LYS LEU TRP PHE GLY PHE SER LYS ARG ALA ARG VAL SEQRES 9 B 318 ILE MET TYR ASN LYS ASN LYS VAL GLN PRO SER GLU LEU SEQRES 10 B 318 SER THR TYR GLU ASP LEU ALA GLN ASN LYS TRP LYS GLY SEQRES 11 B 318 LYS ILE VAL ILE ARG SER SER SER ASN ILE TYR ASN GLN SEQRES 12 B 318 SER LEU ILE ALA SER LEU ILE GLU ILE HIS GLY MET SER SEQRES 13 B 318 ASP ALA GLU GLY TRP ALA LYS GLY PHE VAL ARG ASN PHE SEQRES 14 B 318 ALA ARG PRO PRO GLU GLY ASN ASP THR ALA GLN ILE LYS SEQRES 15 B 318 ALA VAL ALA ALA GLY ILE GLY ASP ILE GLY LEU ALA ASN SEQRES 16 B 318 SER TYR TYR LEU ALA ARG LEU LYS ARG SER SER LYS PRO SEQRES 17 B 318 GLU ASP GLN ALA VAL ALA ASP LYS VAL GLY MET PHE PHE SEQRES 18 B 318 PRO ASN GLN ASN GLY ARG GLY THR HIS VAL ASN ILE SER SEQRES 19 B 318 GLY GLY GLY VAL VAL LYS ASN ALA PRO ASN LYS GLU GLY SEQRES 20 B 318 ALA ILE LYS PHE LEU GLU TYR LEU VAL SER PRO GLU ALA SEQRES 21 B 318 GLN LYS ILE PHE SER GLU GLY ASN ASN GLU TYR PRO VAL SEQRES 22 B 318 VAL ALA GLY VAL PRO ILE ALA SER VAL LEU LYS PRO PHE SEQRES 23 B 318 GLY SER PHE LYS ASN ASP SER THR ASN VAL SER VAL TYR SEQRES 24 B 318 GLY LYS LEU ASN ALA ASP ALA ILE LYS LEU MET ASP ARG SEQRES 25 B 318 VAL GLY TRP LYS LEU GLU SEQRES 1 A 318 GLY ALA ILE ASN LEU TYR SER SER ARG HIS TYR ASP THR SEQRES 2 A 318 ASP GLN ALA LEU TYR ASP SER PHE THR LYS LYS THR GLY SEQRES 3 A 318 LEU LYS VAL ASN LEU ILE GLU GLY LYS GLY ASP LYS LEU SEQRES 4 A 318 ILE GLU ARG ILE LYS SER GLU GLY ALA ASN SER PRO ALA SEQRES 5 A 318 ASP VAL PHE MET THR VAL ASP ALA GLY ARG LEU TRP ARG SEQRES 6 A 318 ALA GLN GLU ALA GLY ILE LEU GLN PRO ILE SER SER SER SEQRES 7 A 318 THR LEU ASN ASN LYS ILE PRO ALA ASN LEU ARG SER PRO SEQRES 8 A 318 GLU LYS LEU TRP PHE GLY PHE SER LYS ARG ALA ARG VAL SEQRES 9 A 318 ILE MET TYR ASN LYS ASN LYS VAL GLN PRO SER GLU LEU SEQRES 10 A 318 SER THR TYR GLU ASP LEU ALA GLN ASN LYS TRP LYS GLY SEQRES 11 A 318 LYS ILE VAL ILE ARG SER SER SER ASN ILE TYR ASN GLN SEQRES 12 A 318 SER LEU ILE ALA SER LEU ILE GLU ILE HIS GLY MET SER SEQRES 13 A 318 ASP ALA GLU GLY TRP ALA LYS GLY PHE VAL ARG ASN PHE SEQRES 14 A 318 ALA ARG PRO PRO GLU GLY ASN ASP THR ALA GLN ILE LYS SEQRES 15 A 318 ALA VAL ALA ALA GLY ILE GLY ASP ILE GLY LEU ALA ASN SEQRES 16 A 318 SER TYR TYR LEU ALA ARG LEU LYS ARG SER SER LYS PRO SEQRES 17 A 318 GLU ASP GLN ALA VAL ALA ASP LYS VAL GLY MET PHE PHE SEQRES 18 A 318 PRO ASN GLN ASN GLY ARG GLY THR HIS VAL ASN ILE SER SEQRES 19 A 318 GLY GLY GLY VAL VAL LYS ASN ALA PRO ASN LYS GLU GLY SEQRES 20 A 318 ALA ILE LYS PHE LEU GLU TYR LEU VAL SER PRO GLU ALA SEQRES 21 A 318 GLN LYS ILE PHE SER GLU GLY ASN ASN GLU TYR PRO VAL SEQRES 22 A 318 VAL ALA GLY VAL PRO ILE ALA SER VAL LEU LYS PRO PHE SEQRES 23 A 318 GLY SER PHE LYS ASN ASP SER THR ASN VAL SER VAL TYR SEQRES 24 A 318 GLY LYS LEU ASN ALA ASP ALA ILE LYS LEU MET ASP ARG SEQRES 25 A 318 VAL GLY TRP LYS LEU GLU HET CL B 401 1 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HET FE A 401 1 HET FLC A 402 13 HET FLC A 403 13 HET CL A 404 1 HET GOL A 405 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM FE FE (III) ION HETNAM FLC CITRATE ANION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 2(CL 1-) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 7 FE FE 3+ FORMUL 8 FLC 2(C6 H5 O7 3-) FORMUL 12 HOH *852(H2 O) HELIX 1 AA1 THR B 16 GLY B 29 1 14 HELIX 2 AA2 LYS B 38 GLY B 50 1 13 HELIX 3 AA3 ALA B 51 SER B 53 5 3 HELIX 4 AA4 ASP B 62 ALA B 72 1 11 HELIX 5 AA5 SER B 80 ILE B 87 1 8 HELIX 6 AA6 PRO B 88 ARG B 92 5 5 HELIX 7 AA7 GLN B 116 LEU B 120 5 5 HELIX 8 AA8 TYR B 123 LYS B 132 5 10 HELIX 9 AA9 ASN B 142 ASN B 171 1 30 HELIX 10 AB1 ASN B 179 ALA B 189 1 11 HELIX 11 AB2 SER B 199 SER B 208 1 10 HELIX 12 AB3 LYS B 210 LYS B 219 1 10 HELIX 13 AB4 ASN B 247 VAL B 259 1 13 HELIX 14 AB5 SER B 260 ASN B 271 1 12 HELIX 15 AB6 LEU B 286 GLY B 290 5 5 HELIX 16 AB7 VAL B 299 LEU B 305 1 7 HELIX 17 AB8 LEU B 305 VAL B 316 1 12 HELIX 18 AB9 THR A 16 GLY A 29 1 14 HELIX 19 AC1 LYS A 38 GLY A 50 1 13 HELIX 20 AC2 ALA A 51 SER A 53 5 3 HELIX 21 AC3 ASP A 62 ALA A 72 1 11 HELIX 22 AC4 SER A 80 ILE A 87 1 8 HELIX 23 AC5 PRO A 88 ARG A 92 5 5 HELIX 24 AC6 GLN A 116 LEU A 120 5 5 HELIX 25 AC7 TYR A 123 LYS A 132 5 10 HELIX 26 AC8 ASN A 142 ASN A 171 1 30 HELIX 27 AC9 ASN A 179 ALA A 189 1 11 HELIX 28 AD1 SER A 199 SER A 208 1 10 HELIX 29 AD2 LYS A 210 LYS A 219 1 10 HELIX 30 AD3 ASN A 247 VAL A 259 1 13 HELIX 31 AD4 SER A 260 ASN A 271 1 12 HELIX 32 AD5 LEU A 286 GLY A 290 5 5 HELIX 33 AD6 VAL A 299 LEU A 305 1 7 HELIX 34 AD7 LEU A 305 VAL A 316 1 12 SHEET 1 A 5 LYS B 31 GLU B 36 0 SHEET 2 A 5 ALA B 5 SER B 10 1 SHEET 3 A 5 VAL B 57 VAL B 61 1 SHEET 4 A 5 VAL B 234 VAL B 241 -1 SHEET 5 A 5 PHE B 99 ALA B 105 -1 SHEET 1 B 3 ILE B 194 ASN B 198 0 SHEET 2 B 3 ARG B 106 ASN B 111 -1 SHEET 3 B 3 VAL B 220 PHE B 223 -1 SHEET 1 C 5 LYS A 31 GLU A 36 0 SHEET 2 C 5 ALA A 5 SER A 10 1 SHEET 3 C 5 VAL A 57 VAL A 61 1 SHEET 4 C 5 VAL A 234 VAL A 241 -1 SHEET 5 C 5 PHE A 99 ALA A 105 -1 SHEET 1 D 3 ILE A 194 ASN A 198 0 SHEET 2 D 3 ARG A 106 ASN A 111 -1 SHEET 3 D 3 VAL A 220 PHE A 223 -1 LINK FE FE A 401 OHB FLC A 402 1555 1555 2.14 LINK FE FE A 401 OB2 FLC A 402 1555 1555 2.11 LINK FE FE A 401 OG1 FLC A 402 1555 1555 2.04 LINK FE FE A 401 OHB FLC A 403 1555 1555 1.95 LINK FE FE A 401 OG2 FLC A 403 1555 1555 2.49 LINK FE FE A 401 OB1 FLC A 403 1555 1555 1.92 SITE 1 AC1 1 ASN B 298 SITE 1 AC2 5 SER B 140 SER B 141 TRP B 318 LYS B 319 SITE 2 AC2 5 GOL B 403 SITE 1 AC3 4 SER B 139 SER B 141 LYS B 319 GOL B 402 SITE 1 AC4 8 VAL B 169 GLU B 249 LYS B 253 VAL B 316 SITE 2 AC4 8 GLY B 317 HOH B 505 HOH B 518 HOH B 907 SITE 1 AC5 2 FLC A 402 FLC A 403 SITE 1 AC6 14 LYS A 38 GLY A 39 ARG A 65 ARG A 138 SITE 2 AC6 14 TYR A 144 TYR A 201 FE A 401 FLC A 403 SITE 3 AC6 14 HOH A 526 HOH A 594 HOH A 616 HOH A 632 SITE 4 AC6 14 HOH A 729 HOH A 737 SITE 1 AC7 6 LYS A 38 ARG A 138 ASN A 142 FE A 401 SITE 2 AC7 6 FLC A 402 HOH A 582 SITE 1 AC8 1 ASN A 298 SITE 1 AC9 7 ASN A 85 LYS A 86 HOH A 605 HOH A 707 SITE 2 AC9 7 HOH A 723 HOH A 777 ASN B 228 CRYST1 56.330 102.010 57.670 90.00 112.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017753 0.000000 0.007482 0.00000 SCALE2 0.000000 0.009803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018817 0.00000