HEADER TRANSCRIPTION 07-APR-18 6G87 TITLE FLAVONOID-RESPONSIVE REGULATOR FRRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETR/ACRR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE SEQUENCE REPRESENTS THE CRYSTALLIZED POLYPEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM DIAZOEFFICIENS; SOURCE 3 ORGANISM_TAXID: 1355477; SOURCE 4 GENE: CO678_15510; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A KEYWDS FLAVONOIDS, REPRESSOR, TETR-FAMILY, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.WERNER,J.HOPPEN,G.PALM,S.WERTEN,M.GOETTFERT,W.HINRICHS REVDAT 2 18-AUG-21 6G87 1 JRNL REMARK REVDAT 1 24-APR-19 6G87 0 JRNL AUTH N.WERNER,S.WERTEN,J.HOPPEN,G.J.PALM,M.GOTTFERT,W.HINRICHS JRNL TITL THE INDUCTION MECHANISM OF THE FLAVONOID-RESPONSIVE JRNL TITL 2 REGULATOR FRRA. JRNL REF FEBS J. 2021 JRNL REFN ISSN 1742-464X JRNL PMID 34314575 JRNL DOI 10.1111/FEBS.16141 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.WENZEL,K.LANG,M.GOTTFERT REMARK 1 TITL CHARACTERIZATION OF THE FLAVONOID-RESPONSIVE REGULATOR FRRA REMARK 1 TITL 2 AND ITS BINDING SITES REMARK 1 REF JOURNAL OF BACTERIOLOGY V. 194 2363 2012 REMARK 1 REFN ISSN 0021-9193 REMARK 1 PMID 22389485 REMARK 1 DOI 10.1128/JB.06567-11 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1080 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1671 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : 1.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.276 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.077 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6284 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6178 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8491 ; 1.552 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14171 ; 1.358 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 778 ; 5.560 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 283 ;35.648 ;23.145 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1037 ;17.013 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;15.496 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 962 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7045 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1450 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3124 ; 3.444 ; 4.933 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3123 ; 3.444 ; 4.931 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3898 ; 5.290 ; 7.398 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3899 ; 5.289 ; 7.400 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3160 ; 4.367 ; 5.568 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3161 ; 4.366 ; 5.568 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4594 ; 6.937 ; 8.138 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7089 ; 8.877 ;39.887 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7087 ; 8.877 ;39.878 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 20 214 B 20 214 11013 0.12 0.05 REMARK 3 2 A 20 213 C 20 213 11319 0.10 0.05 REMARK 3 3 A 20 213 D 20 213 10916 0.12 0.05 REMARK 3 4 B 20 213 C 20 213 10804 0.13 0.05 REMARK 3 5 B 20 213 D 20 213 11189 0.10 0.05 REMARK 3 6 C 19 214 D 19 214 10806 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 214 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 53.2185 33.0158 1.0915 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.1732 REMARK 3 T33: 0.1387 T12: 0.0061 REMARK 3 T13: 0.0137 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 3.9362 L22: 3.3862 REMARK 3 L33: 2.1473 L12: 2.0904 REMARK 3 L13: -1.9534 L23: -1.9021 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: -0.2549 S13: -0.1902 REMARK 3 S21: 0.0871 S22: -0.2030 S23: -0.4817 REMARK 3 S31: -0.2871 S32: 0.2314 S33: 0.1496 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 214 REMARK 3 RESIDUE RANGE : A 302 A 302 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8027 37.5009 -0.7919 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.2733 REMARK 3 T33: 0.1166 T12: -0.0020 REMARK 3 T13: -0.0712 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 1.3768 L22: 6.4964 REMARK 3 L33: 1.5654 L12: -0.8221 REMARK 3 L13: -0.0929 L23: 1.1413 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: 0.2659 S13: -0.0808 REMARK 3 S21: -0.7740 S22: -0.0143 S23: 0.6416 REMARK 3 S31: -0.3716 S32: -0.2460 S33: 0.0886 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 19 C 214 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7283 24.7886 24.8121 REMARK 3 T TENSOR REMARK 3 T11: 0.0719 T22: 0.1908 REMARK 3 T33: 0.0664 T12: 0.0530 REMARK 3 T13: 0.0411 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.1513 L22: 6.5375 REMARK 3 L33: 2.4744 L12: 0.3854 REMARK 3 L13: 0.0591 L23: 2.1602 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: -0.3808 S13: 0.0254 REMARK 3 S21: 0.6225 S22: 0.0619 S23: 0.4777 REMARK 3 S31: 0.1861 S32: -0.1773 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 19 D 214 REMARK 3 RESIDUE RANGE : D 301 D 301 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1795 36.3810 22.2662 REMARK 3 T TENSOR REMARK 3 T11: 0.2846 T22: 0.0789 REMARK 3 T33: 0.2445 T12: -0.0556 REMARK 3 T13: -0.0752 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 4.9755 L22: 3.6236 REMARK 3 L33: 0.4182 L12: -3.4983 REMARK 3 L13: 0.5827 L23: -0.7227 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: 0.0964 S13: 0.5444 REMARK 3 S21: -0.2803 S22: -0.1730 S23: -0.2469 REMARK 3 S31: -0.1475 S32: 0.0894 S33: 0.1571 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6G87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 - 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979031 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.919 REMARK 200 RESOLUTION RANGE LOW (A) : 47.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.020 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.17 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6MG/ML FRRA IN 20 MM NA2HPO4, 100 MM REMARK 280 IMIDAZOLE, PH 7.5, 50 MM NACL. PRECIPITANT 20 % PEG 8000; 0.1 M REMARK 280 CHES, PH 9.5., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.23800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.85700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.61900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 MSE A 3 REMARK 465 ILE A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 ILE A 7 REMARK 465 ALA A 8 REMARK 465 HIS A 9 REMARK 465 PRO A 10 REMARK 465 VAL A 11 REMARK 465 HIS A 12 REMARK 465 GLU A 13 REMARK 465 LYS A 14 REMARK 465 GLU A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 PRO A 18 REMARK 465 ALA A 19 REMARK 465 GLY B 1 REMARK 465 HIS B 2 REMARK 465 MSE B 3 REMARK 465 ILE B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 ILE B 7 REMARK 465 ALA B 8 REMARK 465 HIS B 9 REMARK 465 PRO B 10 REMARK 465 VAL B 11 REMARK 465 HIS B 12 REMARK 465 GLU B 13 REMARK 465 LYS B 14 REMARK 465 GLU B 15 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 PRO B 18 REMARK 465 ALA B 19 REMARK 465 GLY C 1 REMARK 465 HIS C 2 REMARK 465 MSE C 3 REMARK 465 ILE C 4 REMARK 465 GLU C 5 REMARK 465 THR C 6 REMARK 465 ILE C 7 REMARK 465 ALA C 8 REMARK 465 HIS C 9 REMARK 465 PRO C 10 REMARK 465 VAL C 11 REMARK 465 HIS C 12 REMARK 465 GLU C 13 REMARK 465 LYS C 14 REMARK 465 GLU C 15 REMARK 465 SER C 16 REMARK 465 ALA C 17 REMARK 465 PRO C 18 REMARK 465 GLY D 1 REMARK 465 HIS D 2 REMARK 465 MSE D 3 REMARK 465 ILE D 4 REMARK 465 GLU D 5 REMARK 465 THR D 6 REMARK 465 ILE D 7 REMARK 465 ALA D 8 REMARK 465 HIS D 9 REMARK 465 PRO D 10 REMARK 465 VAL D 11 REMARK 465 HIS D 12 REMARK 465 GLU D 13 REMARK 465 LYS D 14 REMARK 465 GLU D 15 REMARK 465 SER D 16 REMARK 465 ALA D 17 REMARK 465 PRO D 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 21 NE CZ NH1 NH2 REMARK 470 LYS B 22 CE NZ REMARK 470 ARG B 213 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 213 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 213 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE C 116 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 LEU D 84 CA - CB - CG ANGL. DEV. = 25.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE D 301 DBREF1 6G87 A 4 214 UNP A0A2A6N3G4_9BRAD DBREF2 6G87 A A0A2A6N3G4 19 229 DBREF1 6G87 B 4 214 UNP A0A2A6N3G4_9BRAD DBREF2 6G87 B A0A2A6N3G4 19 229 DBREF1 6G87 C 4 214 UNP A0A2A6N3G4_9BRAD DBREF2 6G87 C A0A2A6N3G4 19 229 DBREF1 6G87 D 4 214 UNP A0A2A6N3G4_9BRAD DBREF2 6G87 D A0A2A6N3G4 19 229 SEQADV 6G87 GLY A 1 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 HIS A 2 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 MSE A 3 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 GLY B 1 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 HIS B 2 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 MSE B 3 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 GLY C 1 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 HIS C 2 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 MSE C 3 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 GLY D 1 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 HIS D 2 UNP A0A2A6N3G EXPRESSION TAG SEQADV 6G87 MSE D 3 UNP A0A2A6N3G EXPRESSION TAG SEQRES 1 A 214 GLY HIS MSE ILE GLU THR ILE ALA HIS PRO VAL HIS GLU SEQRES 2 A 214 LYS GLU SER ALA PRO ALA GLY ARG LYS MSE ASP ILE VAL SEQRES 3 A 214 ILE ARG ALA ALA TRP GLN LEU PHE LEU GLU GLN GLY PHE SEQRES 4 A 214 SER ALA THR SER MSE ASP ALA ILE ALA LYS ALA ALA GLY SEQRES 5 A 214 VAL SER LYS ALA THR LEU TYR ALA TYR PHE PRO SER LYS SEQRES 6 A 214 GLU ALA LEU PHE ALA SER LEU ILE VAL ALA GLU CYS GLU SEQRES 7 A 214 SER LEU GLN ARG ASP LEU PRO VAL PRO LYS LEU SER ALA SEQRES 8 A 214 GLY LEU SER GLU ALA LEU ARG ASP PHE ALA ARG GLN TYR SEQRES 9 A 214 LEU HIS THR PHE ILE HIS ARG LYS ASP VAL ALA PHE VAL SEQRES 10 A 214 ARG ILE ILE ALA ASN GLU SER GLY ARG PHE PRO VAL LEU SEQRES 11 A 214 ALA ARG LEU PHE TYR GLU SER GLY PRO GLU ALA THR ILE SEQRES 12 A 214 ARG ARG LEU ALA GLN PHE LEU GLU GLU ALA ARG ALA ALA SEQRES 13 A 214 ARG VAL LEU GLU PHE ASP ASP PRO MSE GLU ALA ALA ASN SEQRES 14 A 214 GLN PHE LEU SER LEU VAL ARG GLY GLU LEU PRO LEU LEU SEQRES 15 A 214 ILE VAL LEU GLY LEU SER ASP LEU THR GLU GLU ALA ILE SEQRES 16 A 214 GLU GLN GLU ILE GLU ALA GLY LEU LYS PHE PHE LEU LYS SEQRES 17 A 214 ALA CYS GLN PRO ARG ALA SEQRES 1 B 214 GLY HIS MSE ILE GLU THR ILE ALA HIS PRO VAL HIS GLU SEQRES 2 B 214 LYS GLU SER ALA PRO ALA GLY ARG LYS MSE ASP ILE VAL SEQRES 3 B 214 ILE ARG ALA ALA TRP GLN LEU PHE LEU GLU GLN GLY PHE SEQRES 4 B 214 SER ALA THR SER MSE ASP ALA ILE ALA LYS ALA ALA GLY SEQRES 5 B 214 VAL SER LYS ALA THR LEU TYR ALA TYR PHE PRO SER LYS SEQRES 6 B 214 GLU ALA LEU PHE ALA SER LEU ILE VAL ALA GLU CYS GLU SEQRES 7 B 214 SER LEU GLN ARG ASP LEU PRO VAL PRO LYS LEU SER ALA SEQRES 8 B 214 GLY LEU SER GLU ALA LEU ARG ASP PHE ALA ARG GLN TYR SEQRES 9 B 214 LEU HIS THR PHE ILE HIS ARG LYS ASP VAL ALA PHE VAL SEQRES 10 B 214 ARG ILE ILE ALA ASN GLU SER GLY ARG PHE PRO VAL LEU SEQRES 11 B 214 ALA ARG LEU PHE TYR GLU SER GLY PRO GLU ALA THR ILE SEQRES 12 B 214 ARG ARG LEU ALA GLN PHE LEU GLU GLU ALA ARG ALA ALA SEQRES 13 B 214 ARG VAL LEU GLU PHE ASP ASP PRO MSE GLU ALA ALA ASN SEQRES 14 B 214 GLN PHE LEU SER LEU VAL ARG GLY GLU LEU PRO LEU LEU SEQRES 15 B 214 ILE VAL LEU GLY LEU SER ASP LEU THR GLU GLU ALA ILE SEQRES 16 B 214 GLU GLN GLU ILE GLU ALA GLY LEU LYS PHE PHE LEU LYS SEQRES 17 B 214 ALA CYS GLN PRO ARG ALA SEQRES 1 C 214 GLY HIS MSE ILE GLU THR ILE ALA HIS PRO VAL HIS GLU SEQRES 2 C 214 LYS GLU SER ALA PRO ALA GLY ARG LYS MSE ASP ILE VAL SEQRES 3 C 214 ILE ARG ALA ALA TRP GLN LEU PHE LEU GLU GLN GLY PHE SEQRES 4 C 214 SER ALA THR SER MSE ASP ALA ILE ALA LYS ALA ALA GLY SEQRES 5 C 214 VAL SER LYS ALA THR LEU TYR ALA TYR PHE PRO SER LYS SEQRES 6 C 214 GLU ALA LEU PHE ALA SER LEU ILE VAL ALA GLU CYS GLU SEQRES 7 C 214 SER LEU GLN ARG ASP LEU PRO VAL PRO LYS LEU SER ALA SEQRES 8 C 214 GLY LEU SER GLU ALA LEU ARG ASP PHE ALA ARG GLN TYR SEQRES 9 C 214 LEU HIS THR PHE ILE HIS ARG LYS ASP VAL ALA PHE VAL SEQRES 10 C 214 ARG ILE ILE ALA ASN GLU SER GLY ARG PHE PRO VAL LEU SEQRES 11 C 214 ALA ARG LEU PHE TYR GLU SER GLY PRO GLU ALA THR ILE SEQRES 12 C 214 ARG ARG LEU ALA GLN PHE LEU GLU GLU ALA ARG ALA ALA SEQRES 13 C 214 ARG VAL LEU GLU PHE ASP ASP PRO MSE GLU ALA ALA ASN SEQRES 14 C 214 GLN PHE LEU SER LEU VAL ARG GLY GLU LEU PRO LEU LEU SEQRES 15 C 214 ILE VAL LEU GLY LEU SER ASP LEU THR GLU GLU ALA ILE SEQRES 16 C 214 GLU GLN GLU ILE GLU ALA GLY LEU LYS PHE PHE LEU LYS SEQRES 17 C 214 ALA CYS GLN PRO ARG ALA SEQRES 1 D 214 GLY HIS MSE ILE GLU THR ILE ALA HIS PRO VAL HIS GLU SEQRES 2 D 214 LYS GLU SER ALA PRO ALA GLY ARG LYS MSE ASP ILE VAL SEQRES 3 D 214 ILE ARG ALA ALA TRP GLN LEU PHE LEU GLU GLN GLY PHE SEQRES 4 D 214 SER ALA THR SER MSE ASP ALA ILE ALA LYS ALA ALA GLY SEQRES 5 D 214 VAL SER LYS ALA THR LEU TYR ALA TYR PHE PRO SER LYS SEQRES 6 D 214 GLU ALA LEU PHE ALA SER LEU ILE VAL ALA GLU CYS GLU SEQRES 7 D 214 SER LEU GLN ARG ASP LEU PRO VAL PRO LYS LEU SER ALA SEQRES 8 D 214 GLY LEU SER GLU ALA LEU ARG ASP PHE ALA ARG GLN TYR SEQRES 9 D 214 LEU HIS THR PHE ILE HIS ARG LYS ASP VAL ALA PHE VAL SEQRES 10 D 214 ARG ILE ILE ALA ASN GLU SER GLY ARG PHE PRO VAL LEU SEQRES 11 D 214 ALA ARG LEU PHE TYR GLU SER GLY PRO GLU ALA THR ILE SEQRES 12 D 214 ARG ARG LEU ALA GLN PHE LEU GLU GLU ALA ARG ALA ALA SEQRES 13 D 214 ARG VAL LEU GLU PHE ASP ASP PRO MSE GLU ALA ALA ASN SEQRES 14 D 214 GLN PHE LEU SER LEU VAL ARG GLY GLU LEU PRO LEU LEU SEQRES 15 D 214 ILE VAL LEU GLY LEU SER ASP LEU THR GLU GLU ALA ILE SEQRES 16 D 214 GLU GLN GLU ILE GLU ALA GLY LEU LYS PHE PHE LEU LYS SEQRES 17 D 214 ALA CYS GLN PRO ARG ALA MODRES 6G87 MSE A 23 MET MODIFIED RESIDUE MODRES 6G87 MSE A 44 MET MODIFIED RESIDUE MODRES 6G87 MSE A 165 MET MODIFIED RESIDUE MODRES 6G87 MSE B 23 MET MODIFIED RESIDUE MODRES 6G87 MSE B 44 MET MODIFIED RESIDUE MODRES 6G87 MSE B 165 MET MODIFIED RESIDUE MODRES 6G87 MSE C 23 MET MODIFIED RESIDUE MODRES 6G87 MSE C 44 MET MODIFIED RESIDUE MODRES 6G87 MSE C 165 MET MODIFIED RESIDUE MODRES 6G87 MSE D 23 MET MODIFIED RESIDUE MODRES 6G87 MSE D 44 MET MODIFIED RESIDUE MODRES 6G87 MSE D 165 MET MODIFIED RESIDUE HET MSE A 23 8 HET MSE A 44 8 HET MSE A 165 8 HET MSE B 23 8 HET MSE B 44 8 HET MSE B 165 8 HET MSE C 23 8 HET MSE C 44 8 HET MSE C 165 8 HET MSE D 23 8 HET MSE D 44 8 HET MSE D 165 8 HET NHE A 301 13 HET NHE A 302 13 HET NHE B 301 13 HET NHE D 301 13 HETNAM MSE SELENOMETHIONINE HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 NHE 4(C8 H17 N O3 S) HELIX 1 AA1 ARG A 21 GLY A 38 1 18 HELIX 2 AA2 SER A 43 GLY A 52 1 10 HELIX 3 AA3 SER A 54 PHE A 62 1 9 HELIX 4 AA4 SER A 64 ASP A 83 1 20 HELIX 5 AA5 LYS A 88 ALA A 91 5 4 HELIX 6 AA6 GLY A 92 HIS A 110 1 19 HELIX 7 AA7 ASP A 113 ASN A 122 1 10 HELIX 8 AA8 PHE A 127 GLY A 138 1 12 HELIX 9 AA9 GLY A 138 ALA A 156 1 19 HELIX 10 AB1 ASP A 163 GLY A 177 1 15 HELIX 11 AB2 GLU A 178 LEU A 185 1 8 HELIX 12 AB3 THR A 191 GLN A 211 1 21 HELIX 13 AB4 ARG B 21 GLY B 38 1 18 HELIX 14 AB5 SER B 43 GLY B 52 1 10 HELIX 15 AB6 SER B 54 PHE B 62 1 9 HELIX 16 AB7 SER B 64 ASP B 83 1 20 HELIX 17 AB8 LYS B 88 ALA B 91 5 4 HELIX 18 AB9 GLY B 92 ARG B 111 1 20 HELIX 19 AC1 LYS B 112 ASN B 122 1 11 HELIX 20 AC2 PHE B 127 GLY B 138 1 12 HELIX 21 AC3 GLY B 138 ALA B 156 1 19 HELIX 22 AC4 ASP B 163 GLY B 177 1 15 HELIX 23 AC5 GLU B 178 LEU B 185 1 8 HELIX 24 AC6 THR B 191 GLN B 211 1 21 HELIX 25 AC7 ARG C 21 GLY C 38 1 18 HELIX 26 AC8 SER C 43 GLY C 52 1 10 HELIX 27 AC9 SER C 54 PHE C 62 1 9 HELIX 28 AD1 SER C 64 ASP C 83 1 20 HELIX 29 AD2 LYS C 88 ALA C 91 5 4 HELIX 30 AD3 GLY C 92 HIS C 110 1 19 HELIX 31 AD4 ASP C 113 ASN C 122 1 10 HELIX 32 AD5 PHE C 127 GLY C 138 1 12 HELIX 33 AD6 GLY C 138 ALA C 156 1 19 HELIX 34 AD7 ASP C 163 GLY C 177 1 15 HELIX 35 AD8 GLU C 178 LEU C 185 1 8 HELIX 36 AD9 THR C 191 GLN C 211 1 21 HELIX 37 AE1 GLY D 20 GLY D 38 1 19 HELIX 38 AE2 SER D 43 GLY D 52 1 10 HELIX 39 AE3 SER D 54 PHE D 62 1 9 HELIX 40 AE4 SER D 64 ASP D 83 1 20 HELIX 41 AE5 LYS D 88 ALA D 91 5 4 HELIX 42 AE6 GLY D 92 ARG D 111 1 20 HELIX 43 AE7 LYS D 112 ASN D 122 1 11 HELIX 44 AE8 PHE D 127 GLY D 138 1 12 HELIX 45 AE9 GLY D 138 ALA D 156 1 19 HELIX 46 AF1 ASP D 163 GLY D 177 1 15 HELIX 47 AF2 GLU D 178 LEU D 185 1 8 HELIX 48 AF3 THR D 191 GLN D 211 1 21 LINK C LYS A 22 N MSE A 23 1555 1555 1.32 LINK C MSE A 23 N ASP A 24 1555 1555 1.33 LINK C SER A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N ASP A 45 1555 1555 1.32 LINK C PRO A 164 N MSE A 165 1555 1555 1.32 LINK C MSE A 165 N GLU A 166 1555 1555 1.33 LINK C LYS B 22 N MSE B 23 1555 1555 1.31 LINK C MSE B 23 N ASP B 24 1555 1555 1.33 LINK C SER B 43 N MSE B 44 1555 1555 1.33 LINK C MSE B 44 N ASP B 45 1555 1555 1.33 LINK C PRO B 164 N MSE B 165 1555 1555 1.32 LINK C MSE B 165 N GLU B 166 1555 1555 1.32 LINK C LYS C 22 N MSE C 23 1555 1555 1.32 LINK C MSE C 23 N ASP C 24 1555 1555 1.33 LINK C SER C 43 N MSE C 44 1555 1555 1.33 LINK C MSE C 44 N ASP C 45 1555 1555 1.32 LINK C PRO C 164 N MSE C 165 1555 1555 1.31 LINK C MSE C 165 N GLU C 166 1555 1555 1.32 LINK C LYS D 22 N MSE D 23 1555 1555 1.33 LINK C MSE D 23 N ASP D 24 1555 1555 1.32 LINK C SER D 43 N MSE D 44 1555 1555 1.33 LINK C MSE D 44 N ASP D 45 1555 1555 1.33 LINK C PRO D 164 N MSE D 165 1555 1555 1.33 LINK C MSE D 165 N GLU D 166 1555 1555 1.33 SITE 1 AC1 5 ARG A 132 TYR A 135 ASP B 45 LYS B 55 SITE 2 AC1 5 GLU B 178 SITE 1 AC2 4 GLU A 178 LEU A 182 ARG B 132 TYR B 135 SITE 1 AC3 2 HIS B 110 LYS B 112 SITE 1 AC4 3 GLU C 178 ARG D 132 TYR D 135 CRYST1 119.592 119.592 78.476 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008362 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012743 0.00000