HEADER HYDROLASE 16-APR-18 6GBS TITLE CRYSTAL STRUCTURE OF THE C. THEMOPHILUM SCAVENGER DECAPPING ENZYME TITLE 2 DCPS APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MRNA DECAPPING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SCAVENGER DECAPPING ENZYME; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 3 1495; SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 GENE: CTHT_0038110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUSRIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSFM11 KEYWDS MRNA DECAPPING, DECAPPING ENZYME, SCAVENGER DECAPPING ENZYME, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.-L.FUCHS,A.NEU,R.SPRANGERS REVDAT 3 17-JAN-24 6GBS 1 REMARK REVDAT 2 04-NOV-20 6GBS 1 JRNL REVDAT 1 24-APR-19 6GBS 0 JRNL AUTH A.L.FUCHS,J.P.WURM,A.NEU,R.SPRANGERS JRNL TITL MOLECULAR BASIS OF THE SELECTIVE PROCESSING OF SHORT MRNA JRNL TITL 2 SUBSTRATES BY THE DCPS MRNA DECAPPING ENZYME. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 19237 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32723815 JRNL DOI 10.1073/PNAS.2009362117 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.240 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 115456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5184 - 6.0418 0.88 3533 185 0.1495 0.1665 REMARK 3 2 6.0418 - 4.7969 0.89 3528 182 0.1468 0.1609 REMARK 3 3 4.7969 - 4.1909 0.89 3575 192 0.1166 0.1291 REMARK 3 4 4.1909 - 3.8079 0.90 3585 189 0.1298 0.1420 REMARK 3 5 3.8079 - 3.5351 0.91 3640 190 0.1487 0.1707 REMARK 3 6 3.5351 - 3.3267 0.93 3723 195 0.1691 0.2398 REMARK 3 7 3.3267 - 3.1601 0.94 3777 199 0.1744 0.2060 REMARK 3 8 3.1601 - 3.0226 0.95 3771 200 0.1777 0.2226 REMARK 3 9 3.0226 - 2.9062 0.95 3757 197 0.1800 0.2561 REMARK 3 10 2.9062 - 2.8060 0.95 3799 203 0.1820 0.2209 REMARK 3 11 2.8060 - 2.7182 0.95 3794 195 0.1846 0.2286 REMARK 3 12 2.7182 - 2.6405 0.93 3707 201 0.1901 0.2142 REMARK 3 13 2.6405 - 2.5710 0.93 3739 193 0.2016 0.2502 REMARK 3 14 2.5710 - 2.5083 0.93 3653 187 0.2131 0.2899 REMARK 3 15 2.5083 - 2.4513 0.93 3759 197 0.2180 0.2685 REMARK 3 16 2.4513 - 2.3991 0.92 3594 195 0.2137 0.2883 REMARK 3 17 2.3991 - 2.3511 0.92 3699 196 0.2162 0.2506 REMARK 3 18 2.3511 - 2.3068 0.91 3671 190 0.2230 0.2750 REMARK 3 19 2.3068 - 2.2656 0.91 3578 185 0.2337 0.2657 REMARK 3 20 2.2656 - 2.2272 0.91 3702 194 0.2377 0.3059 REMARK 3 21 2.2272 - 2.1912 0.91 3583 189 0.2526 0.2774 REMARK 3 22 2.1912 - 2.1575 0.91 3654 190 0.2537 0.3054 REMARK 3 23 2.1575 - 2.1258 0.91 3626 195 0.2611 0.3067 REMARK 3 24 2.1258 - 2.0959 0.91 3574 188 0.2583 0.3206 REMARK 3 25 2.0959 - 2.0675 0.91 3705 196 0.2668 0.2754 REMARK 3 26 2.0675 - 2.0407 0.92 3606 186 0.2767 0.3206 REMARK 3 27 2.0407 - 2.0152 0.91 3653 199 0.2850 0.3244 REMARK 3 28 2.0152 - 1.9909 0.92 3650 186 0.2876 0.3111 REMARK 3 29 1.9909 - 1.9677 0.91 3698 198 0.3022 0.3402 REMARK 3 30 1.9677 - 1.9456 0.85 3355 176 0.2906 0.2980 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5572 REMARK 3 ANGLE : 0.870 7535 REMARK 3 CHIRALITY : 0.054 812 REMARK 3 PLANARITY : 0.005 976 REMARK 3 DIHEDRAL : 18.844 3345 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 33.9249 36.0339 13.3660 REMARK 3 T TENSOR REMARK 3 T11: 0.2014 T22: 0.1992 REMARK 3 T33: 0.2050 T12: -0.0339 REMARK 3 T13: -0.0105 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.4386 L22: 0.2989 REMARK 3 L33: 0.3490 L12: -0.0243 REMARK 3 L13: -0.1198 L23: 0.1109 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.0401 S13: -0.0041 REMARK 3 S21: -0.0011 S22: -0.0197 S23: 0.0206 REMARK 3 S31: 0.0210 S32: 0.0193 S33: 0.0101 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 133 OR REMARK 3 RESID 135 THROUGH 159 OR RESID 161 REMARK 3 THROUGH 225 OR RESID 227 THROUGH 333)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 92 OR RESID REMARK 3 96 THROUGH 133 OR RESID 135 THROUGH 159 REMARK 3 OR RESID 161 THROUGH 225 OR RESID 227 REMARK 3 THROUGH 289 OR (RESID 290 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME SD )) OR RESID 291 REMARK 3 THROUGH 333)) REMARK 3 ATOM PAIRS NUMBER : 3144 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLECULAR REPLACEMENT REMARK 4 REMARK 4 6GBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009530. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.946 REMARK 200 RESOLUTION RANGE LOW (A) : 48.503 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.428 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.55 REMARK 200 R MERGE FOR SHELL (I) : 0.70500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 5BV3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUMACETATE, 100 MM BISTRIS REMARK 280 PH 5.5, 25 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 93 REMARK 465 GLY A 94 REMARK 465 THR A 95 REMARK 465 ARG A 334 REMARK 465 PRO A 335 REMARK 465 THR A 336 REMARK 465 SER A 337 REMARK 465 GLU A 338 REMARK 465 PRO A 339 REMARK 465 GLY A 340 REMARK 465 ALA A 341 REMARK 465 ALA A 342 REMARK 465 SER A 343 REMARK 465 GLN A 344 REMARK 465 SER A 345 REMARK 465 GLN A 346 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 ARG B 334 REMARK 465 PRO B 335 REMARK 465 THR B 336 REMARK 465 SER B 337 REMARK 465 GLU B 338 REMARK 465 PRO B 339 REMARK 465 GLY B 340 REMARK 465 ALA B 341 REMARK 465 ALA B 342 REMARK 465 SER B 343 REMARK 465 GLN B 344 REMARK 465 SER B 345 REMARK 465 GLN B 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 141 CE REMARK 470 MET A 224 CE REMARK 470 MET A 284 CE REMARK 470 MET A 290 CE REMARK 470 MET A 309 CE REMARK 470 MET B 141 CE REMARK 470 MET B 224 CE REMARK 470 MET B 284 CE REMARK 470 MET B 309 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 -114.30 60.17 REMARK 500 TYR A 255 55.16 -99.65 REMARK 500 LYS A 276 -55.70 -139.39 REMARK 500 VAL A 323 -63.00 -120.28 REMARK 500 GLN A 332 38.54 -86.86 REMARK 500 ASN B 21 148.04 -170.46 REMARK 500 ASP B 73 -113.31 59.24 REMARK 500 TYR B 255 55.45 -100.96 REMARK 500 LYS B 276 -55.83 -137.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 629 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 630 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B 627 DISTANCE = 6.55 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 DBREF 6GBS A 1 346 UNP G0S8A3 G0S8A3_CHATD 1 346 DBREF 6GBS B 1 346 UNP G0S8A3 G0S8A3_CHATD 1 346 SEQADV 6GBS GLY A -1 UNP G0S8A3 EXPRESSION TAG SEQADV 6GBS ALA A 0 UNP G0S8A3 EXPRESSION TAG SEQADV 6GBS ASN A 258 UNP G0S8A3 HIS 258 ENGINEERED MUTATION SEQADV 6GBS GLY B -1 UNP G0S8A3 EXPRESSION TAG SEQADV 6GBS ALA B 0 UNP G0S8A3 EXPRESSION TAG SEQADV 6GBS ASN B 258 UNP G0S8A3 HIS 258 ENGINEERED MUTATION SEQRES 1 A 348 GLY ALA MET ASP ALA LYS ARG SER ALA GLU ALA LEU VAL SEQRES 2 A 348 PRO ARG PHE GLN PHE GLU ARG LEU LEU ASN GLN ASP GLN SEQRES 3 A 348 ALA GLY ARG ARG SER ALA LEU TYR GLY ALA ILE ASP GLY SEQRES 4 A 348 GLN PRO ALA LEU LEU ILE LEU GLU ARG ALA PRO PHE PRO SEQRES 5 A 348 THR SER THR ALA TYR LEU GLY ARG ALA ALA ASN THR LEU SEQRES 6 A 348 ARG ALA LEU THR ASN LEU GLY ALA ASN ASP ILE TYR HIS SEQRES 7 A 348 TRP TYR LEU ALA SER SER GLY VAL ILE GLU ILE PRO VAL SEQRES 8 A 348 GLU GLU SER GLU GLY THR ASP ASP GLU PHE ALA ASP LEU SEQRES 9 A 348 LYS ILE ASN LEU ILE TYR PRO CYS THR GLU LYS HIS VAL SEQRES 10 A 348 LYS LYS TYR SER LYS GLN GLY VAL ARG PHE VAL THR GLU SEQRES 11 A 348 THR PRO GLU ILE TYR ARG ASP TYR VAL ARG PRO TYR MET SEQRES 12 A 348 GLN ALA GLN ARG GLU ALA GLY ARG LEU ASN TRP VAL TYR SEQRES 13 A 348 ASN ILE ILE GLU GLY ARG LYS GLU VAL GLU ASP VAL ILE SEQRES 14 A 348 TYR ARG THR PRO TYR GLY GLN ASP PRO GLU GLU GLY PHE SEQRES 15 A 348 LEU LEU LEU PRO ASP LEU ASN TRP ASP ARG LYS THR VAL SEQRES 16 A 348 GLU ALA LEU HIS LEU LEU GLY ILE VAL GLU ARG ARG ASP SEQRES 17 A 348 LEU TRP SER LEU ARG ASP LEU LYS LYS LYS HIS LEU PRO SEQRES 18 A 348 TRP LEU ARG HIS MET ARG GLU LYS LEU ILE GLU ALA THR SEQRES 19 A 348 THR LYS VAL TYR PRO THR VAL GLU ALA ASP GLN LEU LYS SEQRES 20 A 348 LEU TYR LEU HIS TYR GLN PRO THR TYR TYR HIS LEU ASN SEQRES 21 A 348 ILE HIS ILE VAL HIS VAL GLN LEU GLU ALA GLY ALA THR SEQRES 22 A 348 GLN ALA THR GLY LYS ALA VAL GLY LEU GLU SER VAL MET SEQRES 23 A 348 GLU GLN LEU GLU HIS MET HIS VAL GLY PRO GLU ASP GLY SEQRES 24 A 348 ASP GLY SER ASP VAL GLY MET ASP ARG VAL THR MET CYS SEQRES 25 A 348 TYR THR LEU GLY GLU ALA SER ASP LEU TRP VAL ASP VAL SEQRES 26 A 348 PHE GLU PRO LEU LYS ARG LYS LYS GLN ALA ARG PRO THR SEQRES 27 A 348 SER GLU PRO GLY ALA ALA SER GLN SER GLN SEQRES 1 B 348 GLY ALA MET ASP ALA LYS ARG SER ALA GLU ALA LEU VAL SEQRES 2 B 348 PRO ARG PHE GLN PHE GLU ARG LEU LEU ASN GLN ASP GLN SEQRES 3 B 348 ALA GLY ARG ARG SER ALA LEU TYR GLY ALA ILE ASP GLY SEQRES 4 B 348 GLN PRO ALA LEU LEU ILE LEU GLU ARG ALA PRO PHE PRO SEQRES 5 B 348 THR SER THR ALA TYR LEU GLY ARG ALA ALA ASN THR LEU SEQRES 6 B 348 ARG ALA LEU THR ASN LEU GLY ALA ASN ASP ILE TYR HIS SEQRES 7 B 348 TRP TYR LEU ALA SER SER GLY VAL ILE GLU ILE PRO VAL SEQRES 8 B 348 GLU GLU SER GLU GLY THR ASP ASP GLU PHE ALA ASP LEU SEQRES 9 B 348 LYS ILE ASN LEU ILE TYR PRO CYS THR GLU LYS HIS VAL SEQRES 10 B 348 LYS LYS TYR SER LYS GLN GLY VAL ARG PHE VAL THR GLU SEQRES 11 B 348 THR PRO GLU ILE TYR ARG ASP TYR VAL ARG PRO TYR MET SEQRES 12 B 348 GLN ALA GLN ARG GLU ALA GLY ARG LEU ASN TRP VAL TYR SEQRES 13 B 348 ASN ILE ILE GLU GLY ARG LYS GLU VAL GLU ASP VAL ILE SEQRES 14 B 348 TYR ARG THR PRO TYR GLY GLN ASP PRO GLU GLU GLY PHE SEQRES 15 B 348 LEU LEU LEU PRO ASP LEU ASN TRP ASP ARG LYS THR VAL SEQRES 16 B 348 GLU ALA LEU HIS LEU LEU GLY ILE VAL GLU ARG ARG ASP SEQRES 17 B 348 LEU TRP SER LEU ARG ASP LEU LYS LYS LYS HIS LEU PRO SEQRES 18 B 348 TRP LEU ARG HIS MET ARG GLU LYS LEU ILE GLU ALA THR SEQRES 19 B 348 THR LYS VAL TYR PRO THR VAL GLU ALA ASP GLN LEU LYS SEQRES 20 B 348 LEU TYR LEU HIS TYR GLN PRO THR TYR TYR HIS LEU ASN SEQRES 21 B 348 ILE HIS ILE VAL HIS VAL GLN LEU GLU ALA GLY ALA THR SEQRES 22 B 348 GLN ALA THR GLY LYS ALA VAL GLY LEU GLU SER VAL MET SEQRES 23 B 348 GLU GLN LEU GLU HIS MET HIS VAL GLY PRO GLU ASP GLY SEQRES 24 B 348 ASP GLY SER ASP VAL GLY MET ASP ARG VAL THR MET CYS SEQRES 25 B 348 TYR THR LEU GLY GLU ALA SER ASP LEU TRP VAL ASP VAL SEQRES 26 B 348 PHE GLU PRO LEU LYS ARG LYS LYS GLN ALA ARG PRO THR SEQRES 27 B 348 SER GLU PRO GLY ALA ALA SER GLN SER GLN HET EDO A 401 10 HET EDO A 402 10 HET EDO A 403 10 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 10 HET PEG A 408 17 HET EDO B 401 10 HET EDO B 402 10 HET EDO B 403 10 HET EDO B 404 10 HET EDO B 405 10 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 12(C2 H6 O2) FORMUL 10 PEG C4 H10 O3 FORMUL 16 HOH *257(H2 O) HELIX 1 AA1 MET A 1 VAL A 11 1 11 HELIX 2 AA2 PRO A 12 PHE A 14 5 3 HELIX 3 AA3 SER A 52 GLY A 57 1 6 HELIX 4 AA4 ARG A 58 THR A 62 5 5 HELIX 5 AA5 PRO A 88 SER A 92 5 5 HELIX 6 AA6 THR A 111 SER A 119 1 9 HELIX 7 AA7 THR A 129 TYR A 136 1 8 HELIX 8 AA8 TYR A 136 ALA A 147 1 12 HELIX 9 AA9 LEU A 150 GLU A 158 1 9 HELIX 10 AB1 THR A 192 ALA A 195 5 4 HELIX 11 AB2 SER A 209 LEU A 213 5 5 HELIX 12 AB3 LYS A 214 LYS A 216 5 3 HELIX 13 AB4 HIS A 217 TYR A 236 1 20 HELIX 14 AB5 GLU A 240 ASP A 242 5 3 HELIX 15 AB6 GLY A 269 ALA A 273 5 5 HELIX 16 AB7 LEU A 280 MET A 290 1 11 HELIX 17 AB8 GLY A 293 GLY A 297 5 5 HELIX 18 AB9 GLY A 303 VAL A 307 5 5 HELIX 19 AC1 SER A 317 VAL A 323 1 7 HELIX 20 AC2 VAL A 323 GLN A 332 1 10 HELIX 21 AC3 ASP B 2 VAL B 11 1 10 HELIX 22 AC4 PRO B 12 PHE B 14 5 3 HELIX 23 AC5 SER B 52 GLY B 57 1 6 HELIX 24 AC6 ARG B 58 THR B 62 5 5 HELIX 25 AC7 PRO B 88 SER B 92 5 5 HELIX 26 AC8 THR B 111 SER B 119 1 9 HELIX 27 AC9 THR B 129 TYR B 136 1 8 HELIX 28 AD1 TYR B 136 ALA B 147 1 12 HELIX 29 AD2 LEU B 150 GLU B 158 1 9 HELIX 30 AD3 THR B 192 ALA B 195 5 4 HELIX 31 AD4 SER B 209 LEU B 213 5 5 HELIX 32 AD5 LYS B 214 LYS B 216 5 3 HELIX 33 AD6 HIS B 217 TYR B 236 1 20 HELIX 34 AD7 GLU B 240 ASP B 242 5 3 HELIX 35 AD8 GLY B 269 ALA B 273 5 5 HELIX 36 AD9 LEU B 280 HIS B 289 1 10 HELIX 37 AE1 GLY B 293 GLY B 297 5 5 HELIX 38 AE2 GLY B 303 VAL B 307 5 5 HELIX 39 AE3 SER B 317 VAL B 323 1 7 HELIX 40 AE4 VAL B 323 GLN B 332 1 10 SHEET 1 AA1 6 GLN A 15 ASP A 23 0 SHEET 2 AA1 6 ARG A 28 ILE A 35 -1 O ALA A 30 N LEU A 20 SHEET 3 AA1 6 GLN A 38 ARG A 46 -1 O LEU A 42 N LEU A 31 SHEET 4 AA1 6 LEU A 102 ILE A 107 -1 O ASN A 105 N ILE A 43 SHEET 5 AA1 6 TYR B 75 SER B 81 -1 O ALA B 80 N LEU A 102 SHEET 6 AA1 6 ALA B 65 ASN B 72 -1 N THR B 67 O LEU B 79 SHEET 1 AA2 6 ALA A 65 ASN A 72 0 SHEET 2 AA2 6 TYR A 75 SER A 81 -1 O TRP A 77 N LEU A 69 SHEET 3 AA2 6 LEU B 102 ILE B 107 -1 O ILE B 104 N TYR A 78 SHEET 4 AA2 6 GLN B 38 ARG B 46 -1 N ILE B 43 O ASN B 105 SHEET 5 AA2 6 ARG B 28 ILE B 35 -1 N LEU B 31 O LEU B 42 SHEET 6 AA2 6 GLN B 15 ASP B 23 -1 N ASN B 21 O ALA B 30 SHEET 1 AA3 2 VAL A 123 GLU A 128 0 SHEET 2 AA3 2 MET A 309 GLY A 314 -1 O TYR A 311 N VAL A 126 SHEET 1 AA4 6 TYR A 168 ARG A 169 0 SHEET 2 AA4 6 PHE A 180 PRO A 184 -1 O LEU A 182 N TYR A 168 SHEET 3 AA4 6 HIS A 197 VAL A 202 -1 O LEU A 199 N LEU A 183 SHEET 4 AA4 6 ASN A 258 HIS A 263 -1 O ILE A 261 N LEU A 198 SHEET 5 AA4 6 LEU A 244 HIS A 249 -1 N TYR A 247 O HIS A 260 SHEET 6 AA4 6 ALA A 277 GLY A 279 -1 O VAL A 278 N LEU A 248 SHEET 1 AA5 2 VAL B 123 GLU B 128 0 SHEET 2 AA5 2 MET B 309 GLY B 314 -1 O MET B 309 N GLU B 128 SHEET 1 AA6 6 TYR B 168 ARG B 169 0 SHEET 2 AA6 6 PHE B 180 PRO B 184 -1 O LEU B 182 N TYR B 168 SHEET 3 AA6 6 HIS B 197 VAL B 202 -1 O LEU B 199 N LEU B 183 SHEET 4 AA6 6 ASN B 258 HIS B 263 -1 O ILE B 259 N GLY B 200 SHEET 5 AA6 6 LEU B 244 HIS B 249 -1 N TYR B 247 O HIS B 260 SHEET 6 AA6 6 ALA B 277 GLY B 279 -1 O VAL B 278 N LEU B 248 CISPEP 1 TYR A 108 PRO A 109 0 -8.30 CISPEP 2 TYR A 250 GLN A 251 0 -6.29 CISPEP 3 TYR B 108 PRO B 109 0 -7.71 CISPEP 4 TYR B 250 GLN B 251 0 -6.60 SITE 1 AC1 3 ARG A 204 LYS A 216 HIS A 217 SITE 1 AC2 3 THR A 238 GLN A 243 HIS A 263 SITE 1 AC3 8 LYS A 245 VAL A 264 LEU A 266 ALA A 268 SITE 2 AC3 8 HOH A 571 ALA B 270 THR B 312 HOH B 517 SITE 1 AC4 5 ARG A 145 TYR A 154 ASP B 36 GLN B 38 SITE 2 AC4 5 TYR B 108 SITE 1 AC5 3 ARG A 204 ARG A 205 GLY B 37 SITE 1 AC6 1 GLU A 285 SITE 1 AC7 7 HIS A 249 PRO A 252 THR A 253 TYR A 254 SITE 2 AC7 7 ASN A 258 HIS A 260 HOH A 505 SITE 1 AC8 5 ILE A 87 GLU A 98 ALA A 100 THR B 67 SITE 2 AC8 5 LEU B 79 SITE 1 AC9 2 GLU B 288 HIS B 289 SITE 1 AD1 4 GLU B 177 ARG B 204 LYS B 216 HIS B 217 SITE 1 AD2 1 GLU B 285 SITE 1 AD3 5 PRO A 109 ASP B 73 ARG B 138 GLN B 142 SITE 2 AD3 5 HOH B 616 SITE 1 AD4 5 HIS B 249 PRO B 252 THR B 253 ASN B 258 SITE 2 AD4 5 HIS B 260 CRYST1 52.595 69.719 70.947 104.48 101.39 111.61 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019013 0.007532 0.006949 0.00000 SCALE2 0.000000 0.015428 0.005844 0.00000 SCALE3 0.000000 0.000000 0.015375 0.00000