HEADER SUGAR BINDING PROTEIN 20-APR-18 6GCZ TITLE LAMINARIN BINDING SUSD-LIKE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: STARCH-BINDING ASSOCIATING WITH OUTER MEMBRANE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GRAMELLA SP. MAR_2010_102; SOURCE 3 ORGANISM_TAXID: 1250231; SOURCE 4 GENE: SAMN04488552_1347; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LAMINARIN, MARINE BACTERIA, X-RAY CRYSTAL STRUCTURE, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.MYSTOWKA,C.S.ROBB,J.H.HEHEMANN REVDAT 3 17-JAN-24 6GCZ 1 REMARK REVDAT 2 19-DEC-18 6GCZ 1 JRNL REVDAT 1 17-OCT-18 6GCZ 0 JRNL AUTH A.A.MYSTKOWSKA,C.ROBB,S.VIDAL-MELGOSA,C.VANNI, JRNL AUTH 2 A.FERNANDEZ-GUERRA,M.HOHNE,J.H.HEHEMANN JRNL TITL MOLECULAR RECOGNITION OF THE BETA-GLUCANS LAMINARIN AND JRNL TITL 2 PUSTULAN BY A SUSD-LIKE GLYCAN-BINDING PROTEIN OF A MARINE JRNL TITL 3 BACTEROIDETES. JRNL REF FEBS J. V. 285 4465 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30300505 JRNL DOI 10.1111/FEBS.14674 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0218 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3547 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3545 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 484 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.79000 REMARK 3 B22 (A**2) : -1.96000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.591 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3633 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3240 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4942 ; 1.762 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7524 ; 0.915 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 5.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;36.719 ;24.828 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;11.687 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;12.778 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4150 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 738 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1843 ; 2.243 ; 2.635 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1842 ; 2.240 ; 2.634 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2302 ; 3.024 ; 3.942 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2303 ; 3.023 ; 3.943 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1790 ; 2.876 ; 2.826 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1790 ; 2.876 ; 2.826 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2641 ; 4.220 ; 4.156 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4352 ; 5.552 ;32.703 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4353 ; 5.551 ;32.703 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50993 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 67.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IHV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL PH 7.8, 16% PEG 8000., REMARK 280 BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.70800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.79350 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.70800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.79350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 GLY A -35 REMARK 465 SER A -34 REMARK 465 SER A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 SER A -26 REMARK 465 SER A -25 REMARK 465 GLY A -24 REMARK 465 LEU A -23 REMARK 465 VAL A -22 REMARK 465 PRO A -21 REMARK 465 ARG A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 GLU A -16 REMARK 465 ASP A -15 REMARK 465 PHE A -14 REMARK 465 ILE A -13 REMARK 465 GLU A -12 REMARK 465 THR A -11 REMARK 465 ASN A -10 REMARK 465 PRO A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 THR A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 GLU A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 TYR A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CB CG CD CE NZ REMARK 470 LEU A 129 CG CD1 CD2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 PHE A 134 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 135 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 695 O HOH A 1053 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 837 O HOH A 1053 3755 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 378 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 387 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 120 -44.87 74.25 REMARK 500 GLN A 207 -161.94 -120.62 REMARK 500 VAL A 439 -64.00 -121.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 DBREF1 6GCZ A -17 461 UNP A0A1H1MMX0_9FLAO DBREF2 6GCZ A A0A1H1MMX0 23 501 SEQADV 6GCZ MET A -36 UNP A0A1H1MMX INITIATING METHIONINE SEQADV 6GCZ GLY A -35 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ SER A -34 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ SER A -33 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ HIS A -32 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ HIS A -31 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ HIS A -30 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ HIS A -29 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ HIS A -28 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ HIS A -27 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ SER A -26 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ SER A -25 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ GLY A -24 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ LEU A -23 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ VAL A -22 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ PRO A -21 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ ARG A -20 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ GLY A -19 UNP A0A1H1MMX EXPRESSION TAG SEQADV 6GCZ SER A -18 UNP A0A1H1MMX EXPRESSION TAG SEQRES 1 A 498 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 498 LEU VAL PRO ARG GLY SER SER GLU ASP PHE ILE GLU THR SEQRES 3 A 498 ASN PRO SER GLY THR ASN LEU GLU SER ASN TYR TYR LYS SEQRES 4 A 498 ASN GLU THR GLU ALA TYR ALA GLY LEU VAL ALA VAL TYR SEQRES 5 A 498 ASP VAL MET ARG LYS TYR SER GLY GLY PHE GLU ASN THR SEQRES 6 A 498 VAL SER PHE LEU ASN ALA GLY SER ASP ASP HIS VAL ALA SEQRES 7 A 498 GLY GLY GLY SER SER SER ASP GLY ALA GLY ILE GLN GLY SEQRES 8 A 498 PHE SER ASN PHE THR ILE ASN PRO THR ILE MET PRO ARG SEQRES 9 A 498 SER TYR TRP SER ASP PHE TYR GLN GLY ILE PHE ARG ALA SEQRES 10 A 498 ASN VAL LEU LEU THR LYS LEU PRO ASP VAL PRO MET ASP SEQRES 11 A 498 GLU SER GLN ILE MET ARG PHE THR ALA GLU THR LYS ALA SEQRES 12 A 498 LEU ARG ALA LEU TYR TYR PHE ASN LEU VAL ASN MET PHE SEQRES 13 A 498 ARG ASN VAL PRO LEU ILE THR GLU PRO LEU GLU PRO SER SEQRES 14 A 498 GLU PHE ASN SER VAL LEU GLN ALA ASP PRO SER ALA VAL SEQRES 15 A 498 TYR THR GLN ILE GLU GLN ASP LEU ASN GLU ALA ILE GLY SEQRES 16 A 498 ASN LEU PRO ASP ILE ILE SER ASP ASP GLN LYS GLY ARG SEQRES 17 A 498 PHE SER ASN GLY SER ALA LYS ALA LEU LEU GLY LYS VAL SEQRES 18 A 498 TYR LEU TYR GLN GLY LYS ASN GLN GLN ALA ALA ALA VAL SEQRES 19 A 498 LEU GLN GLU VAL ASN GLY THR PRO GLY GLN THR SER GLN SEQRES 20 A 498 TYR GLY TYR LYS LEU LEU ASP ASN TYR ASP GLU LEU TRP SEQRES 21 A 498 THR VAL SER ASN LYS PHE ASN SER GLU SER ILE LEU GLU SEQRES 22 A 498 VAL ALA HIS THR ASN ALA SER GLY SER GLY TRP GLY ASN SEQRES 23 A 498 TRP GLY GLN GLY THR ASP GLU GLY ASN SER ILE ASN VAL SEQRES 24 A 498 MET LEU GLY PRO ARG SER TYR ASN GLN ILE THR GLU GLU SEQRES 25 A 498 ALA PRO ASP LEU PRO SER GLY TRP SER PHE ASN PRO VAL SEQRES 26 A 498 LEU PRO GLU LEU TYR ASP LEU LEU GLU GLY ASP PRO ARG SEQRES 27 A 498 PHE GLU ALA THR ILE LEU ASP LEU LYS ALA LEU GLU GLU SEQRES 28 A 498 ALA GLY ALA ALA SER TYR VAL PRO GLY TYR GLN ASP THR SEQRES 29 A 498 GLY TYR PHE LEU ASN LYS PHE ILE PRO ARG VAL THR ASP SEQRES 30 A 498 VAL THR THR LEU THR GLY GLU PRO VAL LEU ASN TYR ARG SEQRES 31 A 498 GLN ASN THR TYR VAL ILE ARG LEU ALA ASP THR TYR LEU SEQRES 32 A 498 MET GLU ALA GLU ALA LEU GLY GLY SER GLY ALA ARG ALA SEQRES 33 A 498 GLN ALA LEU LEU ASP ALA VAL ARG ALA ARG VAL GLY LEU SEQRES 34 A 498 PRO SER THR PRO VAL SER LEU THR ALA ILE ALA LYS GLU SEQRES 35 A 498 ARG ARG LEU GLU LEU ALA GLY GLU GLY HIS ARG PHE TYR SEQRES 36 A 498 ASP LEU VAL ARG THR GLY LYS ALA ALA GLU ALA LEU SER SEQRES 37 A 498 ASP ARG GLY PHE LYS ALA GLY VAL ASN GLU ILE LEU PRO SEQRES 38 A 498 ILE PRO PHE GLN GLU LEU GLN SER THR GLN ILE VAL GLN SEQRES 39 A 498 ASN PRO GLY TYR HET GOL A 501 6 HET GOL A 502 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *484(H2 O) HELIX 1 AA1 ASN A 3 ASP A 16 1 14 HELIX 2 AA2 VAL A 17 SER A 22 5 6 HELIX 3 AA3 ASN A 27 GLY A 35 1 9 HELIX 4 AA4 GLY A 49 ASN A 57 1 9 HELIX 5 AA5 ARG A 67 LEU A 87 1 21 HELIX 6 AA6 PRO A 88 VAL A 90 5 3 HELIX 7 AA7 ASP A 93 ARG A 120 1 28 HELIX 8 AA8 GLU A 130 VAL A 137 1 8 HELIX 9 AA9 ASP A 141 ILE A 157 1 17 HELIX 10 AB1 SER A 165 LYS A 169 5 5 HELIX 11 AB2 SER A 173 GLN A 188 1 16 HELIX 12 AB3 LYS A 190 GLY A 203 1 14 HELIX 13 AB4 ASN A 218 THR A 224 5 7 HELIX 14 AB5 GLY A 246 TRP A 250 5 5 HELIX 15 AB6 SER A 259 LEU A 264 1 6 HELIX 16 AB7 LEU A 289 GLU A 297 1 9 HELIX 17 AB8 ARG A 301 THR A 305 1 5 HELIX 18 AB9 LEU A 309 ALA A 315 1 7 HELIX 19 AC1 LYS A 333 ILE A 335 5 3 HELIX 20 AC2 ARG A 337 VAL A 341 5 5 HELIX 21 AC3 GLU A 347 ASN A 351 5 5 HELIX 22 AC4 LEU A 361 LEU A 372 1 12 HELIX 23 AC5 GLY A 376 VAL A 390 1 15 HELIX 24 AC6 SER A 398 LEU A 410 1 13 HELIX 25 AC7 HIS A 415 THR A 423 1 9 HELIX 26 AC8 LYS A 425 SER A 431 1 7 HELIX 27 AC9 ASP A 432 GLY A 434 5 3 HELIX 28 AD1 PRO A 446 LEU A 450 5 5 SHEET 1 AA1 2 SER A 233 VAL A 237 0 SHEET 2 AA1 2 THR A 356 ARG A 360 -1 O THR A 356 N VAL A 237 SHEET 1 AA2 2 ARG A 267 GLN A 271 0 SHEET 2 AA2 2 ALA A 318 VAL A 321 -1 O VAL A 321 N ARG A 267 SHEET 1 AA3 2 ILE A 306 ASP A 308 0 SHEET 2 AA3 2 TYR A 329 LEU A 331 -1 O PHE A 330 N LEU A 307 SITE 1 AC1 8 TYR A 213 SER A 233 ILE A 234 HOH A 709 SITE 2 AC1 8 HOH A 768 HOH A 805 HOH A 828 HOH A 877 SITE 1 AC2 9 TRP A 223 ASN A 332 LYS A 333 ILE A 335 SITE 2 AC2 9 ARG A 337 HOH A 614 HOH A 631 HOH A 727 SITE 3 AC2 9 HOH A 804 CRYST1 67.385 69.416 115.587 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014840 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008651 0.00000