data_6GDN # _entry.id 6GDN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GDN pdb_00006gdn 10.2210/pdb6gdn/pdb WWPDB D_1200009791 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-07 2 'Structure model' 1 1 2018-11-21 3 'Structure model' 1 2 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_database_proc 4 2 'Structure model' pdbx_seq_map_depositor_info 5 3 'Structure model' chem_comp_atom 6 3 'Structure model' chem_comp_bond 7 3 'Structure model' database_2 8 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 2 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6GDN _pdbx_database_status.recvd_initial_deposition_date 2018-04-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Parkinson, G.N.' 1 0000-0002-1865-9685 'Haider, S.' 2 ? 'Li, P.' 3 ? 'Khiali, S.' 4 ? 'Munnur, D.' 5 ? 'Ramanathan, A.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 140 _citation.language ? _citation.page_first 15366 _citation.page_last 15374 _citation.title 'Holliday Junctions Formed from Human Telomeric DNA.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.8b08699 _citation.pdbx_database_id_PubMed 30376323 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Haider, S.' 1 ? primary 'Li, P.' 2 ? primary 'Khiali, S.' 3 ? primary 'Munnur, D.' 4 ? primary 'Ramanathan, A.' 5 ? primary 'Parkinson, G.N.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Telomere DNA (42-MER)' 12903.272 2 ? ? ? 'Human telomeric DNA sequence' 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DC)(DT)(DT)(DG)(DA)(DA)(DC)(DC)(DC)(DT) (DT)(DG)(DG)(DG)(DT)(DT)(DA)(DC)(DT)(DT)(DG)(DT)(DA)(DA)(DC)(DC)(DC)(DT)(DA)(DA) (DC)(DC) ; _entity_poly.pdbx_seq_one_letter_code_can GGTTAGGGTTCTTGAACCCTTGGGTTACTTGTAACCCTAACC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'MAGNESIUM ION' _pdbx_entity_nonpoly.comp_id MG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DA n 1 6 DG n 1 7 DG n 1 8 DG n 1 9 DT n 1 10 DT n 1 11 DC n 1 12 DT n 1 13 DT n 1 14 DG n 1 15 DA n 1 16 DA n 1 17 DC n 1 18 DC n 1 19 DC n 1 20 DT n 1 21 DT n 1 22 DG n 1 23 DG n 1 24 DG n 1 25 DT n 1 26 DT n 1 27 DA n 1 28 DC n 1 29 DT n 1 30 DT n 1 31 DG n 1 32 DT n 1 33 DA n 1 34 DA n 1 35 DC n 1 36 DC n 1 37 DC n 1 38 DT n 1 39 DA n 1 40 DA n 1 41 DC n 1 42 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 42 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DA 15 15 15 DA DA A . n A 1 16 DA 16 16 16 DA DA A . n A 1 17 DC 17 17 17 DC DC A . n A 1 18 DC 18 18 18 DC DC A . n A 1 19 DC 19 19 19 DC DC A . n A 1 20 DT 20 20 20 DT DT A . n A 1 21 DT 21 21 21 DT DT A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DG 23 23 23 DG DG A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DT 25 25 25 DT DT A . n A 1 26 DT 26 26 26 DT DT A . n A 1 27 DA 27 27 27 DA DA A . n A 1 28 DC 28 28 28 DC DC A . n A 1 29 DT 29 29 29 DT DT A . n A 1 30 DT 30 30 30 DT DT A . n A 1 31 DG 31 31 31 DG DG A . n A 1 32 DT 32 32 32 DT DT A . n A 1 33 DA 33 33 33 DA DA A . n A 1 34 DA 34 34 34 DA DA A . n A 1 35 DC 35 35 35 DC DC A . n A 1 36 DC 36 36 36 DC DC A . n A 1 37 DC 37 37 37 DC DC A . n A 1 38 DT 38 38 38 DT DT A . n A 1 39 DA 39 39 39 DA DA A . n A 1 40 DA 40 40 40 DA DA A . n A 1 41 DC 41 41 41 DC DC A . n A 1 42 DC 42 42 42 DC DC A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DT 3 3 3 DT DT B . n B 1 4 DT 4 4 4 DT DT B . n B 1 5 DA 5 5 5 DA DA B . n B 1 6 DG 6 6 6 DG DG B . n B 1 7 DG 7 7 7 DG DG B . n B 1 8 DG 8 8 8 DG DG B . n B 1 9 DT 9 9 9 DT DT B . n B 1 10 DT 10 10 10 DT DT B . n B 1 11 DC 11 11 11 DC DC B . n B 1 12 DT 12 12 12 DT DT B . n B 1 13 DT 13 13 13 DT DT B . n B 1 14 DG 14 14 14 DG DG B . n B 1 15 DA 15 15 15 DA DA B . n B 1 16 DA 16 16 16 DA DA B . n B 1 17 DC 17 17 17 DC DC B . n B 1 18 DC 18 18 18 DC DC B . n B 1 19 DC 19 19 19 DC DC B . n B 1 20 DT 20 20 20 DT DT B . n B 1 21 DT 21 21 21 DT DT B . n B 1 22 DG 22 22 22 DG DG B . n B 1 23 DG 23 23 23 DG DG B . n B 1 24 DG 24 24 24 DG DG B . n B 1 25 DT 25 25 25 DT DT B . n B 1 26 DT 26 26 26 DT DT B . n B 1 27 DA 27 27 27 DA DA B . n B 1 28 DC 28 28 28 DC DC B . n B 1 29 DT 29 29 29 DT DT B . n B 1 30 DT 30 30 30 DT DT B . n B 1 31 DG 31 31 31 DG DG B . n B 1 32 DT 32 32 32 DT DT B . n B 1 33 DA 33 33 33 DA DA B . n B 1 34 DA 34 34 34 DA DA B . n B 1 35 DC 35 35 35 DC DC B . n B 1 36 DC 36 36 36 DC DC B . n B 1 37 DC 37 37 37 DC DC B . n B 1 38 DT 38 38 38 DT DT B . n B 1 39 DA 39 39 39 DA DA B . n B 1 40 DA 40 40 40 DA DA B . n B 1 41 DC 41 41 41 DC DC B . n B 1 42 DC 42 42 42 DC DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 2 MG MG A . D 2 MG 1 101 1 MG MG B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? 0.5.474-gb1e580cd-dials-1.8 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.32 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? refmac_5.8.0222 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 101.010 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6GDN _cell.details ? _cell.formula_units_Z ? _cell.length_a 49.937 _cell.length_a_esd ? _cell.length_b 45.374 _cell.length_b_esd ? _cell.length_c 63.828 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GDN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.28 _exptl_crystal.description 'Large flat hexagonal plates' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.04 M Magnesium acetate tetrahydrate, 0.05 M Sodium cacodylate trihydrate, 30% v/v (+/-)-2-Methyl-2,4-pentanediol.' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-11-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91587 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91587 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 61 _reflns.entry_id 6GDN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.680 _reflns.d_resolution_low 45.380 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8053 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.600 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.064 _reflns.pdbx_Rpim_I_all 0.033 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.680 2.750 ? ? ? ? ? ? 574 99.800 ? ? ? ? 0.751 ? ? ? ? ? ? ? ? 3.600 ? ? ? ? 0.877 0.447 ? 1 1 0.459 ? 11.990 45.380 ? ? ? ? ? ? 106 98.300 ? ? ? ? 0.019 ? ? ? ? ? ? ? ? 3.500 ? ? ? ? 0.022 0.011 ? 2 1 1.000 ? # _refine.aniso_B[1][1] -0.5800 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.7000 _refine.aniso_B[2][2] -1.7700 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 1.9400 _refine.B_iso_max 120.000 _refine.B_iso_mean 68.3080 _refine.B_iso_min 20.180 _refine.correlation_coeff_Fo_to_Fc 0.9370 _refine.correlation_coeff_Fo_to_Fc_free 0.9030 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6GDN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.0000 _refine.ls_d_res_low 45.38 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type sparse _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5446 _refine.ls_number_reflns_R_free 283 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.0800 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2366 _refine.ls_R_factor_R_free 0.2790 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2343 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6DGH _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.0000 _refine.pdbx_overall_ESU_R_Free 0.4790 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 22.9570 _refine.overall_SU_ML 0.4220 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.0000 _refine_hist.d_res_low 45.38 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1712 _refine_hist.pdbx_number_residues_total 84 _refine_hist.pdbx_B_iso_mean_ligand 54.69 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1710 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 0.011 1912 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 954 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.691 1.182 2948 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 2.375 3.000 2270 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.125 0.200 252 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.013 0.020 988 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 392 ? r_gen_planes_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.000 3.078 422 . 27 385 97.630 . . . 0.428 . 0.392 . . . . . 0.363 20 . . . 'X-RAY DIFFRACTION' 3.078 3.162 412 . 12 394 98.544 . . . 0.333 . 0.334 . . . . . 0.303 20 . . . 'X-RAY DIFFRACTION' 3.162 3.253 400 . 19 374 98.250 . . . 0.371 . 0.215 . . . . . 0.193 20 . . . 'X-RAY DIFFRACTION' 3.253 3.353 384 . 22 358 98.958 . . . 0.207 . 0.237 . . . . . 0.221 20 . . . 'X-RAY DIFFRACTION' 3.353 3.462 374 . 20 351 99.198 . . . 0.258 . 0.234 . . . . . 0.220 20 . . . 'X-RAY DIFFRACTION' 3.462 3.583 375 . 14 356 98.667 . . . 0.393 . 0.282 . . . . . 0.266 20 . . . 'X-RAY DIFFRACTION' 3.583 3.717 336 . 18 314 98.810 . . . 0.412 . 0.277 . . . . . 0.263 20 . . . 'X-RAY DIFFRACTION' 3.717 3.868 341 . 14 325 99.413 . . . 0.373 . 0.265 . . . . . 0.248 20 . . . 'X-RAY DIFFRACTION' 3.868 4.039 322 . 16 305 99.689 . . . 0.351 . 0.256 . . . . . 0.242 20 . . . 'X-RAY DIFFRACTION' 4.039 4.235 320 . 18 302 100.000 . . . 0.235 . 0.223 . . . . . 0.213 20 . . . 'X-RAY DIFFRACTION' 4.235 4.462 295 . 13 280 99.322 . . . 0.303 . 0.216 . . . . . 0.209 20 . . . 'X-RAY DIFFRACTION' 4.462 4.730 284 . 13 269 99.296 . . . 0.347 . 0.238 . . . . . 0.227 20 . . . 'X-RAY DIFFRACTION' 4.730 5.053 273 . 11 260 99.267 . . . 0.231 . 0.220 . . . . . 0.218 20 . . . 'X-RAY DIFFRACTION' 5.053 5.453 241 . 6 235 100.000 . . . 0.197 . 0.190 . . . . . 0.188 20 . . . 'X-RAY DIFFRACTION' 5.453 5.967 224 . 15 209 100.000 . . . 0.322 . 0.196 . . . . . 0.199 20 . . . 'X-RAY DIFFRACTION' 5.967 6.658 218 . 12 204 99.083 . . . 0.183 . 0.280 . . . . . 0.287 20 . . . 'X-RAY DIFFRACTION' 6.658 7.665 188 . 8 179 99.468 . . . 0.237 . 0.221 . . . . . 0.224 20 . . . 'X-RAY DIFFRACTION' 7.665 9.331 160 . 13 147 100.000 . . . 0.290 . 0.210 . . . . . 0.214 20 . . . 'X-RAY DIFFRACTION' 9.331 12.963 133 . 6 126 99.248 . . . 0.280 . 0.170 . . . . . 0.207 20 . . . 'X-RAY DIFFRACTION' 12.963 49.017 77 . 6 71 100.000 . . . 0.095 . 0.179 . . . . . 0.203 20 . . . # _struct.entry_id 6GDN _struct.title 'Holliday Junctions formed from Telomeric DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GDN _struct_keywords.text 'Holliday junction, Homologous recombination, Telomeres, ALT mechanism, ACC structural motif., RECOMBINATION' _struct_keywords.pdbx_keywords RECOMBINATION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6GDN _struct_ref.pdbx_db_accession 6GDN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6GDN A 1 ? 42 ? 6GDN 1 ? 42 ? 1 42 2 1 6GDN B 1 ? 42 ? 6GDN 1 ? 42 ? 1 42 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2430 ? 1 MORE -4 ? 1 'SSA (A^2)' 14590 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 42 N3 ? ? A DG 1 A DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 42 O2 ? ? A DG 1 A DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 42 N4 ? ? A DG 1 A DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 41 N3 ? ? A DG 2 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 41 O2 ? ? A DG 2 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 41 N4 ? ? A DG 2 A DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 40 N1 ? ? A DT 3 A DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 40 N6 ? ? A DT 3 A DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 39 N1 ? ? A DT 4 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 39 N6 ? ? A DT 4 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 38 N3 ? ? A DA 5 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 38 O4 ? ? A DA 5 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 37 N3 ? ? A DG 6 A DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 37 O2 ? ? A DG 6 A DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 37 N4 ? ? A DG 6 A DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 36 N3 ? ? A DG 7 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 36 O2 ? ? A DG 7 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 36 N4 ? ? A DG 7 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 35 N3 ? ? A DG 8 A DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 35 O2 ? ? A DG 8 A DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 35 N4 ? ? A DG 8 A DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 16 N1 ? ? A DT 9 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 16 N6 ? ? A DT 9 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 15 N1 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 15 N6 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 14 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 14 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 14 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 14 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 14 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 14 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 15 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 15 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 16 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 16 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 16 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 24 N1 ? ? A DC 17 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 24 O6 ? ? A DC 17 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 24 N2 ? ? A DC 17 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 23 N1 ? ? A DC 18 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 23 O6 ? ? A DC 18 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 23 N2 ? ? A DC 18 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 19 N3 ? ? ? 1_555 A DG 22 N1 ? ? A DC 19 A DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 19 N4 ? ? ? 1_555 A DG 22 O6 ? ? A DC 19 A DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 19 O2 ? ? ? 1_555 A DG 22 N2 ? ? A DC 19 A DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 23 N1 ? ? ? 1_555 B DC 18 N3 ? ? A DG 23 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 23 N2 ? ? ? 1_555 B DC 18 O2 ? ? A DG 23 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 23 O6 ? ? ? 1_555 B DC 18 N4 ? ? A DG 23 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 24 O6 ? ? ? 1_555 B DC 17 N4 ? ? A DG 24 B DC 17 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog49 hydrog ? ? A DT 25 N3 ? ? ? 1_555 A DA 34 N1 ? ? A DT 25 A DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DT 25 O4 ? ? ? 1_555 A DA 34 N6 ? ? A DT 25 A DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DT 26 N3 ? ? ? 1_555 A DA 33 N1 ? ? A DT 26 A DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DT 26 O4 ? ? ? 1_555 A DA 33 N6 ? ? A DT 26 A DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DA 27 N1 ? ? ? 1_555 A DT 32 N3 ? ? A DA 27 A DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A DA 27 N6 ? ? ? 1_555 A DT 32 O4 ? ? A DA 27 A DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A DC 28 O2 ? ? ? 1_555 A DG 31 N2 ? ? A DC 28 A DG 31 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog56 hydrog ? ? B DG 1 N1 ? ? ? 1_555 B DC 42 N3 ? ? B DG 1 B DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B DG 1 N2 ? ? ? 1_555 B DC 42 O2 ? ? B DG 1 B DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DC 42 N4 ? ? B DG 1 B DC 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DC 41 N3 ? ? B DG 2 B DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DC 41 O2 ? ? B DG 2 B DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DC 41 N4 ? ? B DG 2 B DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DA 40 N1 ? ? B DT 3 B DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B DT 3 O4 ? ? ? 1_555 B DA 40 N6 ? ? B DT 3 B DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B DT 4 N3 ? ? ? 1_555 B DA 39 N1 ? ? B DT 4 B DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B DT 4 O4 ? ? ? 1_555 B DA 39 N6 ? ? B DT 4 B DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B DA 5 N1 ? ? ? 1_555 B DT 38 N3 ? ? B DA 5 B DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B DA 5 N6 ? ? ? 1_555 B DT 38 O4 ? ? B DA 5 B DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B DG 6 N1 ? ? ? 1_555 B DC 37 N3 ? ? B DG 6 B DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B DG 6 N2 ? ? ? 1_555 B DC 37 O2 ? ? B DG 6 B DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B DG 6 O6 ? ? ? 1_555 B DC 37 N4 ? ? B DG 6 B DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B DG 7 N1 ? ? ? 1_555 B DC 36 N3 ? ? B DG 7 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B DG 7 N2 ? ? ? 1_555 B DC 36 O2 ? ? B DG 7 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B DG 7 O6 ? ? ? 1_555 B DC 36 N4 ? ? B DG 7 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B DG 8 N1 ? ? ? 1_555 B DC 35 N3 ? ? B DG 8 B DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B DG 8 N2 ? ? ? 1_555 B DC 35 O2 ? ? B DG 8 B DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B DG 8 O6 ? ? ? 1_555 B DC 35 N4 ? ? B DG 8 B DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B DC 19 N3 ? ? ? 1_555 B DG 22 N1 ? ? B DC 19 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B DC 19 N4 ? ? ? 1_555 B DG 22 O6 ? ? B DC 19 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B DC 19 O2 ? ? ? 1_555 B DG 22 N2 ? ? B DC 19 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B DT 25 N3 ? ? ? 1_555 B DA 34 N1 ? ? B DT 25 B DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B DT 25 O4 ? ? ? 1_555 B DA 34 N6 ? ? B DT 25 B DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B DT 26 N3 ? ? ? 1_555 B DA 33 N1 ? ? B DT 26 B DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B DT 26 O4 ? ? ? 1_555 B DA 33 N6 ? ? B DT 26 B DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B DA 27 N1 ? ? ? 1_555 B DT 32 N3 ? ? B DA 27 B DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B DA 27 N6 ? ? ? 1_555 B DT 32 O4 ? ? B DA 27 B DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B DC 28 N3 ? ? ? 1_555 B DG 31 N1 ? ? B DC 28 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B DC 28 N4 ? ? ? 1_555 B DG 31 O6 ? ? B DC 28 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B DC 28 O2 ? ? ? 1_555 B DG 31 N2 ? ? B DC 28 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 1 'binding site for residue MG A 101' AC2 Software B MG 101 ? 1 'binding site for residue MG B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 DG A 14 ? DG A 14 . ? 1_555 ? 2 AC2 1 DA B 33 ? DA B 33 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 99.72 105.70 -5.98 0.90 N 2 1 "C4'" A DT 13 ? ? "C3'" A DT 13 ? ? "O3'" A DT 13 ? ? 127.66 112.30 15.36 2.00 N 3 1 "O5'" A DC 19 ? ? P A DC 19 ? ? OP2 A DC 19 ? ? 99.83 105.70 -5.87 0.90 N 4 1 "O5'" A DA 39 ? ? P A DA 39 ? ? OP1 A DA 39 ? ? 118.99 110.70 8.29 1.20 N 5 1 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "O3'" B DG 22 ? ? 124.61 112.30 12.31 2.00 N # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 MG MG MG N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6GDN 'double helix' 6GDN 'a-form double helix' 6GDN 'b-form double helix' 6GDN 'hairpin loop' 6GDN 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 42 1_555 0.360 -0.154 0.440 3.421 -6.292 -5.359 1 A_DG1:DC42_A A 1 ? A 42 ? 19 1 1 A DG 2 1_555 A DC 41 1_555 0.007 -0.234 0.523 9.395 -6.737 -0.903 2 A_DG2:DC41_A A 2 ? A 41 ? 19 1 1 A DT 3 1_555 A DA 40 1_555 0.035 -0.307 0.291 -1.386 -11.190 -2.232 3 A_DT3:DA40_A A 3 ? A 40 ? 20 1 1 A DT 4 1_555 A DA 39 1_555 0.280 -0.209 -0.147 -0.201 -14.880 -6.565 4 A_DT4:DA39_A A 4 ? A 39 ? 20 1 1 A DA 5 1_555 A DT 38 1_555 0.188 -0.345 -0.188 -6.406 6.017 -8.025 5 A_DA5:DT38_A A 5 ? A 38 ? 20 1 1 A DG 6 1_555 A DC 37 1_555 0.319 -0.004 0.542 8.206 -1.591 2.866 6 A_DG6:DC37_A A 6 ? A 37 ? 19 1 1 A DG 7 1_555 A DC 36 1_555 -0.161 -0.296 0.218 6.769 -8.059 -0.848 7 A_DG7:DC36_A A 7 ? A 36 ? 19 1 1 A DG 8 1_555 A DC 35 1_555 0.011 -0.278 0.223 0.351 -14.931 -4.127 8 A_DG8:DC35_A A 8 ? A 35 ? 19 1 1 A DT 9 1_555 B DA 16 1_555 -0.019 -0.214 0.369 -5.618 -12.470 -4.299 9 A_DT9:DA16_B A 9 ? B 16 ? 20 1 1 A DT 10 1_555 B DA 15 1_555 -0.288 -0.363 -0.049 -1.219 -12.670 1.619 10 A_DT10:DA15_B A 10 ? B 15 ? 20 1 1 A DC 11 1_555 B DG 14 1_555 -0.133 -0.278 -0.518 5.227 -2.084 -5.562 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 14 1_555 B DC 11 1_555 0.038 -0.004 0.053 -2.250 -14.626 1.387 12 A_DG14:DC11_B A 14 ? B 11 ? 19 1 1 A DA 15 1_555 B DT 10 1_555 0.157 -0.254 0.182 -2.979 -12.970 -1.595 13 A_DA15:DT10_B A 15 ? B 10 ? 20 1 1 A DA 16 1_555 B DT 9 1_555 0.301 -0.056 0.304 6.616 -4.177 1.064 14 A_DA16:DT9_B A 16 ? B 9 ? 20 1 1 B DC 35 1_555 B DG 8 1_555 0.067 -0.042 0.177 2.986 -15.987 -0.287 15 B_DC35:DG8_B B 35 ? B 8 ? 19 1 1 B DC 36 1_555 B DG 7 1_555 0.118 -0.315 0.722 -12.876 -19.826 0.005 16 B_DC36:DG7_B B 36 ? B 7 ? 19 1 1 B DC 37 1_555 B DG 6 1_555 0.176 -0.309 0.763 -3.507 -12.421 3.694 17 B_DC37:DG6_B B 37 ? B 6 ? 19 1 1 B DT 38 1_555 B DA 5 1_555 -0.524 -0.238 -0.162 9.079 -0.058 -7.998 18 B_DT38:DA5_B B 38 ? B 5 ? 20 1 1 B DA 39 1_555 B DT 4 1_555 -0.086 -0.274 0.138 -1.855 -14.579 -6.326 19 B_DA39:DT4_B B 39 ? B 4 ? 20 1 1 B DA 40 1_555 B DT 3 1_555 0.517 0.268 0.341 3.837 -2.750 -5.786 20 B_DA40:DT3_B B 40 ? B 3 ? 20 1 1 B DC 41 1_555 B DG 2 1_555 0.555 -0.675 1.187 -3.727 -13.329 -12.905 21 B_DC41:DG2_B B 41 ? B 2 ? 19 1 1 B DC 42 1_555 B DG 1 1_555 -0.315 0.113 0.146 -1.996 -6.101 -6.364 22 B_DC42:DG1_B B 42 ? B 1 ? 19 1 1 A DG 22 1_555 A DC 19 1_555 -1.045 -0.101 -0.129 -27.820 -7.124 2.867 23 A_DG22:DC19_A A 22 ? A 19 ? 19 1 1 B DG 23 1_555 A DC 18 1_555 0.308 0.726 -0.861 -24.264 -7.243 -2.492 24 B_DG23:DC18_A B 23 ? A 18 ? 19 1 1 B DG 24 1_555 A DC 17 1_555 0.318 0.252 0.311 -14.413 -20.511 1.739 25 B_DG24:DC17_A B 24 ? A 17 ? 19 1 1 B DT 25 1_555 B DA 34 1_555 -0.342 -0.159 0.605 -14.332 -10.983 -11.803 26 B_DT25:DA34_B B 25 ? B 34 ? 20 1 1 B DT 26 1_555 B DA 33 1_555 -0.432 -0.038 0.239 -14.184 -24.115 6.152 27 B_DT26:DA33_B B 26 ? B 33 ? 20 1 1 B DA 27 1_555 B DT 32 1_555 0.456 -0.228 0.127 -7.496 4.869 -2.061 28 B_DA27:DT32_B B 27 ? B 32 ? 20 1 1 B DC 28 1_555 B DG 31 1_555 2.095 -0.431 -0.753 23.628 1.199 3.557 29 B_DC28:DG31_B B 28 ? B 31 ? 19 1 1 A DG 31 1_555 A DC 28 1_555 0.528 -0.311 -2.285 -1.388 -4.104 26.398 30 A_DG31:DC28_A A 31 ? A 28 ? ? 1 1 A DT 32 1_555 A DA 27 1_555 -0.097 -0.566 -1.554 18.246 -11.471 13.457 31 A_DT32:DA27_A A 32 ? A 27 ? 20 1 1 A DA 33 1_555 A DT 26 1_555 -0.438 0.024 -0.814 -7.960 -5.921 1.844 32 A_DA33:DT26_A A 33 ? A 26 ? 20 1 1 A DA 34 1_555 A DT 25 1_555 0.019 -0.130 -1.023 12.226 -15.650 1.304 33 A_DA34:DT25_A A 34 ? A 25 ? 20 1 1 B DC 17 1_555 A DG 24 1_555 0.159 0.173 -1.234 15.164 -17.378 -9.711 34 B_DC17:DG24_A B 17 ? A 24 ? ? 1 1 B DC 18 1_555 A DG 23 1_555 -0.253 0.310 0.054 -18.969 9.892 -2.316 35 B_DC18:DG23_A B 18 ? A 23 ? 19 1 1 B DC 19 1_555 B DG 22 1_555 1.814 -0.391 0.188 -2.094 -7.897 2.635 36 B_DC19:DG22_B B 19 ? B 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 42 1_555 A DG 2 1_555 A DC 41 1_555 -0.638 -0.513 3.083 -2.298 1.539 34.660 -1.081 0.737 3.093 2.577 3.850 34.767 1 AA_DG1DG2:DC41DC42_AA A 1 ? A 42 ? A 2 ? A 41 ? 1 A DG 2 1_555 A DC 41 1_555 A DT 3 1_555 A DA 40 1_555 -0.871 -1.116 3.490 -0.219 -2.149 30.774 -1.647 1.592 3.563 -4.044 0.412 30.848 2 AA_DG2DT3:DA40DC41_AA A 2 ? A 41 ? A 3 ? A 40 ? 1 A DT 3 1_555 A DA 40 1_555 A DT 4 1_555 A DA 39 1_555 0.102 -0.097 3.252 3.012 1.787 37.737 -0.377 0.227 3.242 2.756 -4.645 37.893 3 AA_DT3DT4:DA39DA40_AA A 3 ? A 40 ? A 4 ? A 39 ? 1 A DT 4 1_555 A DA 39 1_555 A DA 5 1_555 A DT 38 1_555 0.127 1.187 3.475 -2.348 -6.165 42.462 2.255 -0.415 3.268 -8.451 3.218 42.948 4 AA_DT4DA5:DT38DA39_AA A 4 ? A 39 ? A 5 ? A 38 ? 1 A DA 5 1_555 A DT 38 1_555 A DG 6 1_555 A DC 37 1_555 0.528 0.434 3.029 -7.784 4.812 30.037 -0.029 -2.321 2.840 9.024 14.599 31.369 5 AA_DA5DG6:DC37DT38_AA A 5 ? A 38 ? A 6 ? A 37 ? 1 A DG 6 1_555 A DC 37 1_555 A DG 7 1_555 A DC 36 1_555 -0.474 -0.533 3.386 -0.327 2.694 29.245 -1.647 0.862 3.330 5.321 0.646 29.368 6 AA_DG6DG7:DC36DC37_AA A 6 ? A 37 ? A 7 ? A 36 ? 1 A DG 7 1_555 A DC 36 1_555 A DG 8 1_555 A DC 35 1_555 -0.329 -0.907 3.322 -2.768 1.387 41.985 -1.408 0.168 3.306 1.932 3.858 42.093 7 AA_DG7DG8:DC35DC36_AA A 7 ? A 36 ? A 8 ? A 35 ? 1 A DG 8 1_555 A DC 35 1_555 A DT 9 1_555 B DA 16 1_555 -0.775 -1.184 3.323 -1.759 -2.052 31.164 -1.794 1.094 3.429 -3.810 3.266 31.278 8 AA_DG8DT9:DA16DC35_BA A 8 ? A 35 ? A 9 ? B 16 ? 1 A DT 9 1_555 B DA 16 1_555 A DT 10 1_555 B DA 15 1_555 0.096 -0.016 3.096 3.802 0.919 31.955 -0.184 0.470 3.084 1.661 -6.873 32.187 9 AA_DT9DT10:DA15DA16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DT 10 1_555 B DA 15 1_555 A DC 11 1_555 B DG 14 1_555 0.630 0.568 3.183 5.833 5.043 32.363 0.147 -0.123 3.292 8.892 -10.284 33.245 10 AA_DT10DC11:DG14DA15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DG 14 1_555 B DC 11 1_555 A DA 15 1_555 B DT 10 1_555 -0.776 -0.230 3.182 -4.337 1.119 36.756 -0.510 0.647 3.242 1.766 6.847 37.019 11 AA_DG14DA15:DT10DC11_BB A 14 ? B 11 ? A 15 ? B 10 ? 1 A DA 15 1_555 B DT 10 1_555 A DA 16 1_555 B DT 9 1_555 0.296 -0.216 3.049 0.456 0.023 32.583 -0.389 -0.453 3.052 0.040 -0.813 32.586 12 AA_DA15DA16:DT9DT10_BB A 15 ? B 10 ? A 16 ? B 9 ? 1 A DA 16 1_555 B DT 9 1_555 B DC 35 1_555 B DG 8 1_555 0.755 -1.043 3.221 0.913 4.990 30.670 -2.867 -1.241 3.038 9.353 -1.712 31.077 13 AB_DA16DC35:DG8DT9_BB A 16 ? B 9 ? B 35 ? B 8 ? 1 B DC 35 1_555 B DG 8 1_555 B DC 36 1_555 B DG 7 1_555 0.106 -0.931 3.631 -0.673 5.471 40.302 -2.003 -0.235 3.479 7.895 0.971 40.661 14 BB_DC35DC36:DG7DG8_BB B 35 ? B 8 ? B 36 ? B 7 ? 1 B DC 36 1_555 B DG 7 1_555 B DC 37 1_555 B DG 6 1_555 0.122 -0.619 3.004 1.470 3.041 31.973 -1.613 0.018 2.936 5.501 -2.659 32.147 15 BB_DC36DC37:DG6DG7_BB B 36 ? B 7 ? B 37 ? B 6 ? 1 B DC 37 1_555 B DG 6 1_555 B DT 38 1_555 B DA 5 1_555 -0.586 -0.093 3.105 6.952 2.333 21.983 -0.977 3.684 2.766 5.911 -17.612 23.160 16 BB_DC37DT38:DA5DG6_BB B 37 ? B 6 ? B 38 ? B 5 ? 1 B DT 38 1_555 B DA 5 1_555 B DA 39 1_555 B DT 4 1_555 0.035 1.180 3.591 0.170 -3.991 44.324 1.956 -0.030 3.478 -5.277 -0.225 44.495 17 BB_DT38DA39:DT4DA5_BB B 38 ? B 5 ? B 39 ? B 4 ? 1 B DA 39 1_555 B DT 4 1_555 B DA 40 1_555 B DT 3 1_555 -0.712 0.016 3.025 -4.635 3.489 44.966 -0.270 0.539 3.073 4.539 6.030 45.320 18 BB_DA39DA40:DT3DT4_BB B 39 ? B 4 ? B 40 ? B 3 ? 1 B DA 40 1_555 B DT 3 1_555 B DC 41 1_555 B DG 2 1_555 0.042 -1.425 3.555 -7.864 -2.966 31.624 -1.963 -1.579 3.558 -5.326 14.121 32.695 19 BB_DA40DC41:DG2DT3_BB B 40 ? B 3 ? B 41 ? B 2 ? 1 B DC 41 1_555 B DG 2 1_555 B DC 42 1_555 B DG 1 1_555 0.242 -0.965 3.045 8.816 -2.221 30.988 -1.360 1.057 3.057 -4.050 -16.071 32.262 20 BB_DC41DC42:DG1DG2_BB B 41 ? B 2 ? B 42 ? B 1 ? 1 A DG 22 1_555 A DC 19 1_555 B DG 23 1_555 A DC 18 1_555 0.619 -0.865 3.555 1.083 15.921 21.311 -6.116 -1.059 2.373 37.078 -2.522 26.568 21 AB_DG22DG23:DC18DC19_AA A 22 ? A 19 ? B 23 ? A 18 ? 1 B DG 23 1_555 A DC 18 1_555 B DG 24 1_555 A DC 17 1_555 -0.278 -1.172 3.323 -4.384 -5.863 41.938 -0.996 -0.080 3.459 -8.117 6.069 42.544 22 BB_DG23DG24:DC17DC18_AA B 23 ? A 18 ? B 24 ? A 17 ? 1 B DG 24 1_555 A DC 17 1_555 B DT 25 1_555 B DA 34 1_555 -1.237 -1.343 3.124 -1.338 -2.144 29.013 -2.213 2.174 3.265 -4.268 2.663 29.121 23 BB_DG24DT25:DA34DC17_BA B 24 ? A 17 ? B 25 ? B 34 ? 1 B DT 25 1_555 B DA 34 1_555 B DT 26 1_555 B DA 33 1_555 0.113 -0.306 3.061 1.598 3.175 36.409 -0.895 0.026 3.027 5.067 -2.551 36.576 24 BB_DT25DT26:DA33DA34_BB B 25 ? B 34 ? B 26 ? B 33 ? 1 B DT 26 1_555 B DA 33 1_555 B DA 27 1_555 B DT 32 1_555 0.499 0.901 3.257 -3.318 -2.543 40.001 1.594 -1.095 3.147 -3.705 4.835 40.210 25 BB_DT26DA27:DT32DA33_BB B 26 ? B 33 ? B 27 ? B 32 ? 1 B DA 27 1_555 B DT 32 1_555 B DC 28 1_555 B DG 31 1_555 1.469 1.615 2.792 12.581 -1.695 33.975 2.819 -0.731 3.047 -2.783 -20.656 36.204 26 BB_DA27DC28:DG31DT32_BB B 27 ? B 32 ? B 28 ? B 31 ? 1 A DG 31 1_555 A DC 28 1_555 A DT 32 1_555 A DA 27 1_555 0.239 1.456 2.695 1.180 0.522 33.570 2.448 -0.254 2.723 0.903 -2.043 33.595 27 AA_DG31DT32:DA27DC28_AA A 31 ? A 28 ? A 32 ? A 27 ? 1 A DT 32 1_555 A DA 27 1_555 A DA 33 1_555 A DT 26 1_555 -0.362 1.184 4.224 0.172 17.959 31.371 -1.644 0.619 4.265 30.306 -0.290 36.036 28 AA_DT32DA33:DT26DA27_AA A 32 ? A 27 ? A 33 ? A 26 ? 1 A DA 33 1_555 A DT 26 1_555 A DA 34 1_555 A DT 25 1_555 0.871 0.369 2.995 -0.766 11.985 35.665 -0.886 -1.445 2.945 18.918 1.209 37.570 29 AA_DA33DA34:DT25DT26_AA A 33 ? A 26 ? A 34 ? A 25 ? 1 A DA 34 1_555 A DT 25 1_555 B DC 17 1_555 A DG 24 1_555 0.123 -1.087 2.785 0.529 1.783 33.672 -2.119 -0.139 2.727 3.075 -0.912 33.722 30 AB_DA34DC17:DG24DT25_AA A 34 ? A 25 ? B 17 ? A 24 ? 1 B DC 17 1_555 A DG 24 1_555 B DC 18 1_555 A DG 23 1_555 0.046 -2.323 4.315 -13.280 20.596 32.584 -5.966 -1.752 2.329 31.724 20.454 40.571 31 BB_DC17DC18:DG23DG24_AA B 17 ? A 24 ? B 18 ? A 23 ? 1 B DC 18 1_555 A DG 23 1_555 B DC 19 1_555 B DG 22 1_555 -0.759 -1.040 3.217 1.507 -16.878 28.896 1.179 1.588 3.274 -30.716 -2.743 33.407 32 BB_DC18DC19:DG22DG23_BA B 18 ? A 23 ? B 19 ? B 22 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6DGH _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6GDN _atom_sites.fract_transf_matrix[1][1] 0.020025 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003897 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022039 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015961 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 MG 5.427 2.828 2.176 79.261 1.228 0.381 2.310 7.194 0.925 N 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.251 # loop_