data_6GDR # _entry.id 6GDR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GDR pdb_00006gdr 10.2210/pdb6gdr/pdb WWPDB D_1200009803 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-07-25 2 'Structure model' 1 1 2018-10-03 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6GDR _pdbx_database_status.recvd_initial_deposition_date 2018-04-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category CASP _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Williamson, A.' 1 ? 'Grigic, M.' 2 ? 'Leiros, H.K.S.' 3 0000-0002-2726-6322 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 8616 _citation.page_last 8629 _citation.title 'DNA binding with a minimal scaffold: structure-function analysis of Lig E DNA ligases.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky622 _citation.pdbx_database_id_PubMed 30007325 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Williamson, A.' 1 ? primary 'Grgic, M.' 2 ? primary 'Leiros, H.S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3') ; 6494.194 1 ? ? ? ? 2 polymer man DNA 3004.981 1 ? ? ? ? 3 polymer man ;DNA (5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3') ; 3342.212 1 ? ? ? ? 4 polymer man 'DNA ligase' 33017.656 1 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 6 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 1 ? ? ? ? 7 water nat water 18.015 69 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DT)(DC)(DC)(DG)(DA)(DT)(DA)(DG)(DT)(DG)(DG)(DG)(DG)(DT)(DC)(DG)(DC)(DA)(DA) (DT) ; TTCCGATAGTGGGGTCGCAAT B ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DT)(DG)(DC)(DG)(DA)(DC)(DC)(DC)' ATTGCGACCC C ? 3 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DT)(DA)(DT)(DC)(DG)(DG)(DA)(DA)' CACTATCGGAA D ? 4 'polypeptide(L)' no no ;GEDKHDIVDGLQLAKQYGHSRQDINIAEYWVSEKLDGIRARWDGTELRTRNNNKIDAPAWFTANWPKATIDGELWIARGQ FERTASIVLSKLTSVAPQSVAGSLPRTESTVDAMTATHSLPSKRWAKVRFMAFDMPVAGQSFDSRLNMLNNLKEATPNPT FAVVSQFTLSSVNALEEKLEQVTLSGGEGLMLHHKKAFYHSGRSDKLIKVKQFEDAEAKVLAHFAGKGKFKGMMGSLLVE TPAGVQFKLGTGFSEKERRAPPAVGSWVTFKFYGVTKNGKPRFASFLRVRPPSDLPK ; ;GEDKHDIVDGLQLAKQYGHSRQDINIAEYWVSEKLDGIRARWDGTELRTRNNNKIDAPAWFTANWPKATIDGELWIARGQ FERTASIVLSKLTSVAPQSVAGSLPRTESTVDAMTATHSLPSKRWAKVRFMAFDMPVAGQSFDSRLNMLNNLKEATPNPT FAVVSQFTLSSVNALEEKLEQVTLSGGEGLMLHHKKAFYHSGRSDKLIKVKQFEDAEAKVLAHFAGKGKFKGMMGSLLVE TPAGVQFKLGTGFSEKERRAPPAVGSWVTFKFYGVTKNGKPRFASFLRVRPPSDLPK ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'PHOSPHATE ION' PO4 6 'ADENOSINE MONOPHOSPHATE' AMP 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DA n 1 7 DT n 1 8 DA n 1 9 DG n 1 10 DT n 1 11 DG n 1 12 DG n 1 13 DG n 1 14 DG n 1 15 DT n 1 16 DC n 1 17 DG n 1 18 DC n 1 19 DA n 1 20 DA n 1 21 DT n 2 1 DA n 2 2 DT n 2 3 DT n 2 4 DG n 2 5 DC n 2 6 DG n 2 7 DA n 2 8 DC n 2 9 DC n 2 10 DC n 3 1 DC n 3 2 DA n 3 3 DC n 3 4 DT n 3 5 DA n 3 6 DT n 3 7 DC n 3 8 DG n 3 9 DG n 3 10 DA n 3 11 DA n 4 1 GLY n 4 2 GLU n 4 3 ASP n 4 4 LYS n 4 5 HIS n 4 6 ASP n 4 7 ILE n 4 8 VAL n 4 9 ASP n 4 10 GLY n 4 11 LEU n 4 12 GLN n 4 13 LEU n 4 14 ALA n 4 15 LYS n 4 16 GLN n 4 17 TYR n 4 18 GLY n 4 19 HIS n 4 20 SER n 4 21 ARG n 4 22 GLN n 4 23 ASP n 4 24 ILE n 4 25 ASN n 4 26 ILE n 4 27 ALA n 4 28 GLU n 4 29 TYR n 4 30 TRP n 4 31 VAL n 4 32 SER n 4 33 GLU n 4 34 LYS n 4 35 LEU n 4 36 ASP n 4 37 GLY n 4 38 ILE n 4 39 ARG n 4 40 ALA n 4 41 ARG n 4 42 TRP n 4 43 ASP n 4 44 GLY n 4 45 THR n 4 46 GLU n 4 47 LEU n 4 48 ARG n 4 49 THR n 4 50 ARG n 4 51 ASN n 4 52 ASN n 4 53 ASN n 4 54 LYS n 4 55 ILE n 4 56 ASP n 4 57 ALA n 4 58 PRO n 4 59 ALA n 4 60 TRP n 4 61 PHE n 4 62 THR n 4 63 ALA n 4 64 ASN n 4 65 TRP n 4 66 PRO n 4 67 LYS n 4 68 ALA n 4 69 THR n 4 70 ILE n 4 71 ASP n 4 72 GLY n 4 73 GLU n 4 74 LEU n 4 75 TRP n 4 76 ILE n 4 77 ALA n 4 78 ARG n 4 79 GLY n 4 80 GLN n 4 81 PHE n 4 82 GLU n 4 83 ARG n 4 84 THR n 4 85 ALA n 4 86 SER n 4 87 ILE n 4 88 VAL n 4 89 LEU n 4 90 SER n 4 91 LYS n 4 92 LEU n 4 93 THR n 4 94 SER n 4 95 VAL n 4 96 ALA n 4 97 PRO n 4 98 GLN n 4 99 SER n 4 100 VAL n 4 101 ALA n 4 102 GLY n 4 103 SER n 4 104 LEU n 4 105 PRO n 4 106 ARG n 4 107 THR n 4 108 GLU n 4 109 SER n 4 110 THR n 4 111 VAL n 4 112 ASP n 4 113 ALA n 4 114 MET n 4 115 THR n 4 116 ALA n 4 117 THR n 4 118 HIS n 4 119 SER n 4 120 LEU n 4 121 PRO n 4 122 SER n 4 123 LYS n 4 124 ARG n 4 125 TRP n 4 126 ALA n 4 127 LYS n 4 128 VAL n 4 129 ARG n 4 130 PHE n 4 131 MET n 4 132 ALA n 4 133 PHE n 4 134 ASP n 4 135 MET n 4 136 PRO n 4 137 VAL n 4 138 ALA n 4 139 GLY n 4 140 GLN n 4 141 SER n 4 142 PHE n 4 143 ASP n 4 144 SER n 4 145 ARG n 4 146 LEU n 4 147 ASN n 4 148 MET n 4 149 LEU n 4 150 ASN n 4 151 ASN n 4 152 LEU n 4 153 LYS n 4 154 GLU n 4 155 ALA n 4 156 THR n 4 157 PRO n 4 158 ASN n 4 159 PRO n 4 160 THR n 4 161 PHE n 4 162 ALA n 4 163 VAL n 4 164 VAL n 4 165 SER n 4 166 GLN n 4 167 PHE n 4 168 THR n 4 169 LEU n 4 170 SER n 4 171 SER n 4 172 VAL n 4 173 ASN n 4 174 ALA n 4 175 LEU n 4 176 GLU n 4 177 GLU n 4 178 LYS n 4 179 LEU n 4 180 GLU n 4 181 GLN n 4 182 VAL n 4 183 THR n 4 184 LEU n 4 185 SER n 4 186 GLY n 4 187 GLY n 4 188 GLU n 4 189 GLY n 4 190 LEU n 4 191 MET n 4 192 LEU n 4 193 HIS n 4 194 HIS n 4 195 LYS n 4 196 LYS n 4 197 ALA n 4 198 PHE n 4 199 TYR n 4 200 HIS n 4 201 SER n 4 202 GLY n 4 203 ARG n 4 204 SER n 4 205 ASP n 4 206 LYS n 4 207 LEU n 4 208 ILE n 4 209 LYS n 4 210 VAL n 4 211 LYS n 4 212 GLN n 4 213 PHE n 4 214 GLU n 4 215 ASP n 4 216 ALA n 4 217 GLU n 4 218 ALA n 4 219 LYS n 4 220 VAL n 4 221 LEU n 4 222 ALA n 4 223 HIS n 4 224 PHE n 4 225 ALA n 4 226 GLY n 4 227 LYS n 4 228 GLY n 4 229 LYS n 4 230 PHE n 4 231 LYS n 4 232 GLY n 4 233 MET n 4 234 MET n 4 235 GLY n 4 236 SER n 4 237 LEU n 4 238 LEU n 4 239 VAL n 4 240 GLU n 4 241 THR n 4 242 PRO n 4 243 ALA n 4 244 GLY n 4 245 VAL n 4 246 GLN n 4 247 PHE n 4 248 LYS n 4 249 LEU n 4 250 GLY n 4 251 THR n 4 252 GLY n 4 253 PHE n 4 254 SER n 4 255 GLU n 4 256 LYS n 4 257 GLU n 4 258 ARG n 4 259 ARG n 4 260 ALA n 4 261 PRO n 4 262 PRO n 4 263 ALA n 4 264 VAL n 4 265 GLY n 4 266 SER n 4 267 TRP n 4 268 VAL n 4 269 THR n 4 270 PHE n 4 271 LYS n 4 272 PHE n 4 273 TYR n 4 274 GLY n 4 275 VAL n 4 276 THR n 4 277 LYS n 4 278 ASN n 4 279 GLY n 4 280 LYS n 4 281 PRO n 4 282 ARG n 4 283 PHE n 4 284 ALA n 4 285 SER n 4 286 PHE n 4 287 LEU n 4 288 ARG n 4 289 VAL n 4 290 ARG n 4 291 PRO n 4 292 PRO n 4 293 SER n 4 294 ASP n 4 295 LEU n 4 296 PRO n 4 297 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 21 ? ? ? ? ? ? ? ? ? 'Alteromonas mediterranea' 314275 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 10 ? ? ? ? ? ? ? ? ? 'Alteromonas mediterranea' 314275 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 11 ? ? ? ? ? ? ? ? ? 'Alteromonas mediterranea' 314275 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample 'Biological sequence' 1 297 ? ? BM525_03130 ? ? ? ? ? ? 'Alteromonas mediterranea' 314275 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT B . n A 1 2 DT 2 2 2 DT DT B . n A 1 3 DC 3 3 3 DC DC B . n A 1 4 DC 4 4 4 DC DC B . n A 1 5 DG 5 5 5 DG DG B . n A 1 6 DA 6 6 6 DA DA B . n A 1 7 DT 7 7 7 DT DT B . n A 1 8 DA 8 8 8 DA DA B . n A 1 9 DG 9 9 9 DG DG B . n A 1 10 DT 10 10 10 DT DT B . n A 1 11 DG 11 11 11 DG DG B . n A 1 12 DG 12 12 12 DG DG B . n A 1 13 DG 13 13 13 DG DG B . n A 1 14 DG 14 14 14 DG DG B . n A 1 15 DT 15 15 15 DT DT B . n A 1 16 DC 16 16 16 DC DC B . n A 1 17 DG 17 17 17 DG DG B . n A 1 18 DC 18 18 18 DC DC B . n A 1 19 DA 19 19 19 DA DA B . n A 1 20 DA 20 20 20 DA DA B . n A 1 21 DT 21 21 21 DT DT B . n B 2 1 DA 1 22 22 DA DA C . n B 2 2 DT 2 23 23 DT DT C . n B 2 3 DT 3 24 24 DT DT C . n B 2 4 DG 4 25 25 DG DG C . n B 2 5 DC 5 26 26 DC DC C . n B 2 6 DG 6 27 27 DG DG C . n B 2 7 DA 7 28 28 DA DA C . n B 2 8 DC 8 29 29 DC DC C . n B 2 9 DC 9 30 30 DC OMC C . n B 2 10 DC 10 31 31 DC DC C . n C 3 1 DC 1 32 32 DC DC D . n C 3 2 DA 2 33 33 DA DA D . n C 3 3 DC 3 34 34 DC DC D . n C 3 4 DT 4 35 35 DT DT D . n C 3 5 DA 5 36 36 DA DA D . n C 3 6 DT 6 37 37 DT DT D . n C 3 7 DC 7 38 38 DC DC D . n C 3 8 DG 8 39 39 DG DG D . n C 3 9 DG 9 40 40 DG DG D . n C 3 10 DA 10 41 41 DA DA D . n C 3 11 DA 11 42 42 DA DA D . n D 4 1 GLY 1 1 ? ? ? A . n D 4 2 GLU 2 2 ? ? ? A . n D 4 3 ASP 3 3 ? ? ? A . n D 4 4 LYS 4 4 ? ? ? A . n D 4 5 HIS 5 5 ? ? ? A . n D 4 6 ASP 6 6 ? ? ? A . n D 4 7 ILE 7 7 7 ILE ILE A . n D 4 8 VAL 8 8 8 VAL VAL A . n D 4 9 ASP 9 9 9 ASP ASP A . n D 4 10 GLY 10 10 10 GLY GLY A . n D 4 11 LEU 11 11 11 LEU LEU A . n D 4 12 GLN 12 12 12 GLN GLN A . n D 4 13 LEU 13 13 13 LEU LEU A . n D 4 14 ALA 14 14 14 ALA ALA A . n D 4 15 LYS 15 15 15 LYS LYS A . n D 4 16 GLN 16 16 16 GLN GLN A . n D 4 17 TYR 17 17 17 TYR TYR A . n D 4 18 GLY 18 18 18 GLY GLY A . n D 4 19 HIS 19 19 19 HIS HIS A . n D 4 20 SER 20 20 ? ? ? A . n D 4 21 ARG 21 21 ? ? ? A . n D 4 22 GLN 22 22 22 GLN GLN A . n D 4 23 ASP 23 23 23 ASP ASP A . n D 4 24 ILE 24 24 24 ILE ILE A . n D 4 25 ASN 25 25 25 ASN ASN A . n D 4 26 ILE 26 26 26 ILE ILE A . n D 4 27 ALA 27 27 27 ALA ALA A . n D 4 28 GLU 28 28 28 GLU GLU A . n D 4 29 TYR 29 29 29 TYR TYR A . n D 4 30 TRP 30 30 30 TRP TRP A . n D 4 31 VAL 31 31 31 VAL VAL A . n D 4 32 SER 32 32 32 SER SER A . n D 4 33 GLU 33 33 33 GLU GLU A . n D 4 34 LYS 34 34 34 LYS LYS A . n D 4 35 LEU 35 35 35 LEU LEU A . n D 4 36 ASP 36 36 36 ASP ASP A . n D 4 37 GLY 37 37 37 GLY GLY A . n D 4 38 ILE 38 38 38 ILE ILE A . n D 4 39 ARG 39 39 39 ARG ARG A . n D 4 40 ALA 40 40 40 ALA ALA A . n D 4 41 ARG 41 41 41 ARG ARG A . n D 4 42 TRP 42 42 42 TRP TRP A . n D 4 43 ASP 43 43 43 ASP ASP A . n D 4 44 GLY 44 44 44 GLY GLY A . n D 4 45 THR 45 45 45 THR THR A . n D 4 46 GLU 46 46 46 GLU GLU A . n D 4 47 LEU 47 47 47 LEU LEU A . n D 4 48 ARG 48 48 48 ARG ARG A . n D 4 49 THR 49 49 49 THR THR A . n D 4 50 ARG 50 50 50 ARG ARG A . n D 4 51 ASN 51 51 51 ASN ASN A . n D 4 52 ASN 52 52 52 ASN ASN A . n D 4 53 ASN 53 53 53 ASN ASN A . n D 4 54 LYS 54 54 54 LYS LYS A . n D 4 55 ILE 55 55 55 ILE ILE A . n D 4 56 ASP 56 56 56 ASP ASP A . n D 4 57 ALA 57 57 57 ALA ALA A . n D 4 58 PRO 58 58 58 PRO PRO A . n D 4 59 ALA 59 59 59 ALA ALA A . n D 4 60 TRP 60 60 60 TRP TRP A . n D 4 61 PHE 61 61 61 PHE PHE A . n D 4 62 THR 62 62 62 THR THR A . n D 4 63 ALA 63 63 63 ALA ALA A . n D 4 64 ASN 64 64 64 ASN ASN A . n D 4 65 TRP 65 65 65 TRP TRP A . n D 4 66 PRO 66 66 66 PRO PRO A . n D 4 67 LYS 67 67 67 LYS LYS A . n D 4 68 ALA 68 68 68 ALA ALA A . n D 4 69 THR 69 69 69 THR THR A . n D 4 70 ILE 70 70 70 ILE ILE A . n D 4 71 ASP 71 71 71 ASP ASP A . n D 4 72 GLY 72 72 72 GLY GLY A . n D 4 73 GLU 73 73 73 GLU GLU A . n D 4 74 LEU 74 74 74 LEU LEU A . n D 4 75 TRP 75 75 75 TRP TRP A . n D 4 76 ILE 76 76 76 ILE ILE A . n D 4 77 ALA 77 77 77 ALA ALA A . n D 4 78 ARG 78 78 78 ARG ARG A . n D 4 79 GLY 79 79 79 GLY GLY A . n D 4 80 GLN 80 80 80 GLN GLN A . n D 4 81 PHE 81 81 81 PHE PHE A . n D 4 82 GLU 82 82 82 GLU GLU A . n D 4 83 ARG 83 83 83 ARG ARG A . n D 4 84 THR 84 84 84 THR THR A . n D 4 85 ALA 85 85 85 ALA ALA A . n D 4 86 SER 86 86 86 SER SER A . n D 4 87 ILE 87 87 87 ILE ILE A . n D 4 88 VAL 88 88 88 VAL VAL A . n D 4 89 LEU 89 89 89 LEU LEU A . n D 4 90 SER 90 90 90 SER SER A . n D 4 91 LYS 91 91 91 LYS LYS A . n D 4 92 LEU 92 92 92 LEU LEU A . n D 4 93 THR 93 93 93 THR THR A . n D 4 94 SER 94 94 ? ? ? A . n D 4 95 VAL 95 95 ? ? ? A . n D 4 96 ALA 96 96 ? ? ? A . n D 4 97 PRO 97 97 ? ? ? A . n D 4 98 GLN 98 98 ? ? ? A . n D 4 99 SER 99 99 ? ? ? A . n D 4 100 VAL 100 100 ? ? ? A . n D 4 101 ALA 101 101 ? ? ? A . n D 4 102 GLY 102 102 ? ? ? A . n D 4 103 SER 103 103 ? ? ? A . n D 4 104 LEU 104 104 ? ? ? A . n D 4 105 PRO 105 105 ? ? ? A . n D 4 106 ARG 106 106 ? ? ? A . n D 4 107 THR 107 107 ? ? ? A . n D 4 108 GLU 108 108 ? ? ? A . n D 4 109 SER 109 109 ? ? ? A . n D 4 110 THR 110 110 ? ? ? A . n D 4 111 VAL 111 111 ? ? ? A . n D 4 112 ASP 112 112 ? ? ? A . n D 4 113 ALA 113 113 ? ? ? A . n D 4 114 MET 114 114 ? ? ? A . n D 4 115 THR 115 115 ? ? ? A . n D 4 116 ALA 116 116 ? ? ? A . n D 4 117 THR 117 117 ? ? ? A . n D 4 118 HIS 118 118 ? ? ? A . n D 4 119 SER 119 119 ? ? ? A . n D 4 120 LEU 120 120 120 LEU LEU A . n D 4 121 PRO 121 121 121 PRO PRO A . n D 4 122 SER 122 122 122 SER SER A . n D 4 123 LYS 123 123 123 LYS LYS A . n D 4 124 ARG 124 124 124 ARG ARG A . n D 4 125 TRP 125 125 125 TRP TRP A . n D 4 126 ALA 126 126 126 ALA ALA A . n D 4 127 LYS 127 127 127 LYS LYS A . n D 4 128 VAL 128 128 128 VAL VAL A . n D 4 129 ARG 129 129 129 ARG ARG A . n D 4 130 PHE 130 130 130 PHE PHE A . n D 4 131 MET 131 131 131 MET MET A . n D 4 132 ALA 132 132 132 ALA ALA A . n D 4 133 PHE 133 133 133 PHE PHE A . n D 4 134 ASP 134 134 134 ASP ASP A . n D 4 135 MET 135 135 135 MET MET A . n D 4 136 PRO 136 136 136 PRO PRO A . n D 4 137 VAL 137 137 137 VAL VAL A . n D 4 138 ALA 138 138 138 ALA ALA A . n D 4 139 GLY 139 139 139 GLY GLY A . n D 4 140 GLN 140 140 140 GLN GLN A . n D 4 141 SER 141 141 141 SER SER A . n D 4 142 PHE 142 142 142 PHE PHE A . n D 4 143 ASP 143 143 143 ASP ASP A . n D 4 144 SER 144 144 144 SER SER A . n D 4 145 ARG 145 145 145 ARG ARG A . n D 4 146 LEU 146 146 146 LEU LEU A . n D 4 147 ASN 147 147 147 ASN ASN A . n D 4 148 MET 148 148 148 MET MET A . n D 4 149 LEU 149 149 149 LEU LEU A . n D 4 150 ASN 150 150 150 ASN ASN A . n D 4 151 ASN 151 151 151 ASN ASN A . n D 4 152 LEU 152 152 152 LEU LEU A . n D 4 153 LYS 153 153 153 LYS LYS A . n D 4 154 GLU 154 154 154 GLU GLU A . n D 4 155 ALA 155 155 155 ALA ALA A . n D 4 156 THR 156 156 156 THR THR A . n D 4 157 PRO 157 157 157 PRO PRO A . n D 4 158 ASN 158 158 158 ASN ASN A . n D 4 159 PRO 159 159 159 PRO PRO A . n D 4 160 THR 160 160 160 THR THR A . n D 4 161 PHE 161 161 161 PHE PHE A . n D 4 162 ALA 162 162 162 ALA ALA A . n D 4 163 VAL 163 163 163 VAL VAL A . n D 4 164 VAL 164 164 164 VAL VAL A . n D 4 165 SER 165 165 165 SER SER A . n D 4 166 GLN 166 166 166 GLN GLN A . n D 4 167 PHE 167 167 167 PHE PHE A . n D 4 168 THR 168 168 168 THR THR A . n D 4 169 LEU 169 169 169 LEU LEU A . n D 4 170 SER 170 170 170 SER SER A . n D 4 171 SER 171 171 171 SER SER A . n D 4 172 VAL 172 172 172 VAL VAL A . n D 4 173 ASN 173 173 173 ASN ASN A . n D 4 174 ALA 174 174 174 ALA ALA A . n D 4 175 LEU 175 175 175 LEU LEU A . n D 4 176 GLU 176 176 176 GLU GLU A . n D 4 177 GLU 177 177 177 GLU GLU A . n D 4 178 LYS 178 178 178 LYS LYS A . n D 4 179 LEU 179 179 179 LEU LEU A . n D 4 180 GLU 180 180 180 GLU GLU A . n D 4 181 GLN 181 181 181 GLN GLN A . n D 4 182 VAL 182 182 182 VAL VAL A . n D 4 183 THR 183 183 183 THR THR A . n D 4 184 LEU 184 184 184 LEU LEU A . n D 4 185 SER 185 185 185 SER SER A . n D 4 186 GLY 186 186 186 GLY GLY A . n D 4 187 GLY 187 187 187 GLY GLY A . n D 4 188 GLU 188 188 188 GLU GLU A . n D 4 189 GLY 189 189 189 GLY GLY A . n D 4 190 LEU 190 190 190 LEU LEU A . n D 4 191 MET 191 191 191 MET MET A . n D 4 192 LEU 192 192 192 LEU LEU A . n D 4 193 HIS 193 193 193 HIS HIS A . n D 4 194 HIS 194 194 194 HIS HIS A . n D 4 195 LYS 195 195 195 LYS LYS A . n D 4 196 LYS 196 196 196 LYS LYS A . n D 4 197 ALA 197 197 197 ALA ALA A . n D 4 198 PHE 198 198 198 PHE PHE A . n D 4 199 TYR 199 199 199 TYR TYR A . n D 4 200 HIS 200 200 200 HIS HIS A . n D 4 201 SER 201 201 201 SER SER A . n D 4 202 GLY 202 202 202 GLY GLY A . n D 4 203 ARG 203 203 203 ARG ARG A . n D 4 204 SER 204 204 204 SER SER A . n D 4 205 ASP 205 205 205 ASP ASP A . n D 4 206 LYS 206 206 206 LYS LYS A . n D 4 207 LEU 207 207 207 LEU LEU A . n D 4 208 ILE 208 208 208 ILE ILE A . n D 4 209 LYS 209 209 209 LYS LYS A . n D 4 210 VAL 210 210 210 VAL VAL A . n D 4 211 LYS 211 211 211 LYS LYS A . n D 4 212 GLN 212 212 212 GLN GLN A . n D 4 213 PHE 213 213 213 PHE PHE A . n D 4 214 GLU 214 214 214 GLU GLU A . n D 4 215 ASP 215 215 215 ASP ASP A . n D 4 216 ALA 216 216 216 ALA ALA A . n D 4 217 GLU 217 217 217 GLU GLU A . n D 4 218 ALA 218 218 218 ALA ALA A . n D 4 219 LYS 219 219 219 LYS LYS A . n D 4 220 VAL 220 220 220 VAL VAL A . n D 4 221 LEU 221 221 221 LEU LEU A . n D 4 222 ALA 222 222 222 ALA ALA A . n D 4 223 HIS 223 223 223 HIS HIS A . n D 4 224 PHE 224 224 224 PHE PHE A . n D 4 225 ALA 225 225 225 ALA ALA A . n D 4 226 GLY 226 226 226 GLY GLY A . n D 4 227 LYS 227 227 227 LYS LYS A . n D 4 228 GLY 228 228 228 GLY GLY A . n D 4 229 LYS 229 229 229 LYS LYS A . n D 4 230 PHE 230 230 230 PHE PHE A . n D 4 231 LYS 231 231 231 LYS LYS A . n D 4 232 GLY 232 232 232 GLY GLY A . n D 4 233 MET 233 233 233 MET MET A . n D 4 234 MET 234 234 234 MET MET A . n D 4 235 GLY 235 235 235 GLY GLY A . n D 4 236 SER 236 236 236 SER SER A . n D 4 237 LEU 237 237 237 LEU LEU A . n D 4 238 LEU 238 238 238 LEU LEU A . n D 4 239 VAL 239 239 239 VAL VAL A . n D 4 240 GLU 240 240 240 GLU GLU A . n D 4 241 THR 241 241 241 THR THR A . n D 4 242 PRO 242 242 242 PRO PRO A . n D 4 243 ALA 243 243 243 ALA ALA A . n D 4 244 GLY 244 244 244 GLY GLY A . n D 4 245 VAL 245 245 245 VAL VAL A . n D 4 246 GLN 246 246 246 GLN GLN A . n D 4 247 PHE 247 247 247 PHE PHE A . n D 4 248 LYS 248 248 248 LYS LYS A . n D 4 249 LEU 249 249 249 LEU LEU A . n D 4 250 GLY 250 250 250 GLY GLY A . n D 4 251 THR 251 251 251 THR THR A . n D 4 252 GLY 252 252 252 GLY GLY A . n D 4 253 PHE 253 253 253 PHE PHE A . n D 4 254 SER 254 254 254 SER SER A . n D 4 255 GLU 255 255 255 GLU GLU A . n D 4 256 LYS 256 256 256 LYS LYS A . n D 4 257 GLU 257 257 257 GLU GLU A . n D 4 258 ARG 258 258 258 ARG ARG A . n D 4 259 ARG 259 259 259 ARG ARG A . n D 4 260 ALA 260 260 260 ALA ALA A . n D 4 261 PRO 261 261 261 PRO PRO A . n D 4 262 PRO 262 262 262 PRO PRO A . n D 4 263 ALA 263 263 263 ALA ALA A . n D 4 264 VAL 264 264 264 VAL VAL A . n D 4 265 GLY 265 265 265 GLY GLY A . n D 4 266 SER 266 266 266 SER SER A . n D 4 267 TRP 267 267 267 TRP TRP A . n D 4 268 VAL 268 268 268 VAL VAL A . n D 4 269 THR 269 269 269 THR THR A . n D 4 270 PHE 270 270 270 PHE PHE A . n D 4 271 LYS 271 271 271 LYS LYS A . n D 4 272 PHE 272 272 272 PHE PHE A . n D 4 273 TYR 273 273 273 TYR TYR A . n D 4 274 GLY 274 274 274 GLY GLY A . n D 4 275 VAL 275 275 275 VAL VAL A . n D 4 276 THR 276 276 276 THR THR A . n D 4 277 LYS 277 277 277 LYS LYS A . n D 4 278 ASN 278 278 278 ASN ASN A . n D 4 279 GLY 279 279 279 GLY GLY A . n D 4 280 LYS 280 280 280 LYS LYS A . n D 4 281 PRO 281 281 281 PRO PRO A . n D 4 282 ARG 282 282 282 ARG ARG A . n D 4 283 PHE 283 283 283 PHE PHE A . n D 4 284 ALA 284 284 284 ALA ALA A . n D 4 285 SER 285 285 285 SER SER A . n D 4 286 PHE 286 286 286 PHE PHE A . n D 4 287 LEU 287 287 287 LEU LEU A . n D 4 288 ARG 288 288 288 ARG ARG A . n D 4 289 VAL 289 289 289 VAL VAL A . n D 4 290 ARG 290 290 290 ARG ARG A . n D 4 291 PRO 291 291 ? ? ? A . n D 4 292 PRO 292 292 ? ? ? A . n D 4 293 SER 293 293 ? ? ? A . n D 4 294 ASP 294 294 ? ? ? A . n D 4 295 LEU 295 295 ? ? ? A . n D 4 296 PRO 296 296 ? ? ? A . n D 4 297 LYS 297 297 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PO4 1 101 1 PO4 PO4 B . F 5 PO4 1 102 2 PO4 PO4 B . G 6 AMP 1 300 300 AMP AMP D . H 7 HOH 1 201 2 HOH HOH B . H 7 HOH 2 202 46 HOH HOH B . H 7 HOH 3 203 48 HOH HOH B . H 7 HOH 4 204 66 HOH HOH B . H 7 HOH 5 205 4 HOH HOH B . H 7 HOH 6 206 17 HOH HOH B . H 7 HOH 7 207 3 HOH HOH B . H 7 HOH 8 208 47 HOH HOH B . H 7 HOH 9 209 29 HOH HOH B . H 7 HOH 10 210 11 HOH HOH B . H 7 HOH 11 211 36 HOH HOH B . H 7 HOH 12 212 63 HOH HOH B . H 7 HOH 13 213 57 HOH HOH B . H 7 HOH 14 214 69 HOH HOH B . H 7 HOH 15 215 13 HOH HOH B . H 7 HOH 16 216 37 HOH HOH B . H 7 HOH 17 217 55 HOH HOH B . H 7 HOH 18 218 24 HOH HOH B . H 7 HOH 19 219 40 HOH HOH B . I 7 HOH 1 101 51 HOH HOH C . I 7 HOH 2 102 21 HOH HOH C . I 7 HOH 3 103 22 HOH HOH C . I 7 HOH 4 104 25 HOH HOH C . J 7 HOH 1 401 1 HOH HOH D . J 7 HOH 2 402 33 HOH HOH D . J 7 HOH 3 403 14 HOH HOH D . J 7 HOH 4 404 5 HOH HOH D . J 7 HOH 5 405 28 HOH HOH D . J 7 HOH 6 406 62 HOH HOH D . J 7 HOH 7 407 12 HOH HOH D . J 7 HOH 8 408 38 HOH HOH D . K 7 HOH 1 301 68 HOH HOH A . K 7 HOH 2 302 39 HOH HOH A . K 7 HOH 3 303 65 HOH HOH A . K 7 HOH 4 304 54 HOH HOH A . K 7 HOH 5 305 53 HOH HOH A . K 7 HOH 6 306 20 HOH HOH A . K 7 HOH 7 307 41 HOH HOH A . K 7 HOH 8 308 64 HOH HOH A . K 7 HOH 9 309 50 HOH HOH A . K 7 HOH 10 310 9 HOH HOH A . K 7 HOH 11 311 59 HOH HOH A . K 7 HOH 12 312 61 HOH HOH A . K 7 HOH 13 313 45 HOH HOH A . K 7 HOH 14 314 10 HOH HOH A . K 7 HOH 15 315 70 HOH HOH A . K 7 HOH 16 316 27 HOH HOH A . K 7 HOH 17 317 23 HOH HOH A . K 7 HOH 18 318 49 HOH HOH A . K 7 HOH 19 319 18 HOH HOH A . K 7 HOH 20 320 31 HOH HOH A . K 7 HOH 21 321 7 HOH HOH A . K 7 HOH 22 322 8 HOH HOH A . K 7 HOH 23 323 58 HOH HOH A . K 7 HOH 24 324 56 HOH HOH A . K 7 HOH 25 325 35 HOH HOH A . K 7 HOH 26 326 44 HOH HOH A . K 7 HOH 27 327 19 HOH HOH A . K 7 HOH 28 328 16 HOH HOH A . K 7 HOH 29 329 32 HOH HOH A . K 7 HOH 30 330 52 HOH HOH A . K 7 HOH 31 331 43 HOH HOH A . K 7 HOH 32 332 26 HOH HOH A . K 7 HOH 33 333 6 HOH HOH A . K 7 HOH 34 334 67 HOH HOH A . K 7 HOH 35 335 42 HOH HOH A . K 7 HOH 36 336 60 HOH HOH A . K 7 HOH 37 337 30 HOH HOH A . K 7 HOH 38 338 15 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLN 22 ? CB ? D GLN 22 CB 2 1 Y 0 A GLN 22 ? CG ? D GLN 22 CG 3 1 Y 0 A GLN 22 ? CD ? D GLN 22 CD 4 1 Y 0 A GLN 22 ? OE1 ? D GLN 22 OE1 5 1 Y 0 A GLN 22 ? NE2 ? D GLN 22 NE2 6 1 Y 0 A LEU 120 ? CD1 ? D LEU 120 CD1 7 1 Y 0 A LEU 120 ? CD2 ? D LEU 120 CD2 8 1 Y 0 A LYS 123 ? CG ? D LYS 123 CG 9 1 Y 0 A LYS 123 ? CD ? D LYS 123 CD 10 1 Y 0 A LYS 123 ? CE ? D LYS 123 CE 11 1 Y 0 A LYS 123 ? NZ ? D LYS 123 NZ 12 1 Y 0 A LYS 196 ? NZ ? D LYS 196 NZ 13 1 Y 0 A LYS 231 ? NZ ? D LYS 231 NZ 14 1 Y 0 A LYS 256 ? CD ? D LYS 256 CD 15 1 Y 0 A LYS 256 ? CE ? D LYS 256 CE 16 1 Y 0 A LYS 256 ? NZ ? D LYS 256 NZ 17 1 Y 0 A ARG 290 ? CZ ? D ARG 290 CZ 18 1 Y 0 A ARG 290 ? NH1 ? D ARG 290 NH1 19 1 Y 0 A ARG 290 ? NH2 ? D ARG 290 NH2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 94.82 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6GDR _cell.details ? _cell.formula_units_Z ? _cell.length_a 65.024 _cell.length_a_esd ? _cell.length_b 71.207 _cell.length_b_esd ? _cell.length_c 117.160 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GDR _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.94 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '24% PEG 4K, 100 mM Bis-Tris pH 5.5, 12% ethyleneglycol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 39.4 _reflns.entry_id 6GDR _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.33 _reflns.d_resolution_low 47.92 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22739 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.9 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.088 _reflns.pdbx_Rpim_I_all 0.046 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.33 _reflns_shell.d_res_low 2.41 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2184 _reflns_shell.percent_possible_all 96.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.387 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.635 _reflns_shell.pdbx_Rpim_I_all 0.0858 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.493 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6GDR _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.33 _refine.ls_d_res_low 24.840 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22708 _refine.ls_number_reflns_R_free 1143 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.64 _refine.ls_percent_reflns_R_free 5.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2205 _refine.ls_R_factor_R_free 0.2641 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2181 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Homology model' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.17 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.39 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2031 _refine_hist.pdbx_number_atoms_nucleic_acid 856 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 2988 _refine_hist.d_res_high 2.33 _refine_hist.d_res_low 24.840 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 3090 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.556 ? 4350 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 19.829 ? 1661 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.040 ? 469 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 405 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.3272 2.4330 . . 147 2629 97.00 . . . 0.3323 . 0.3038 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4330 2.5612 . . 149 2702 100.00 . . . 0.3433 . 0.3150 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5612 2.7215 . . 141 2669 98.00 . . . 0.3639 . 0.3195 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7215 2.9313 . . 121 2727 100.00 . . . 0.4008 . 0.3067 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9313 3.2257 . . 143 2707 99.00 . . . 0.2992 . 0.2640 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2257 3.6912 . . 153 2665 98.00 . . . 0.2791 . 0.2211 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6912 4.6455 . . 143 2718 99.00 . . . 0.2609 . 0.1790 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.6455 24.8409 . . 146 2748 98.00 . . . 0.1868 . 0.1712 . . . . . . . . . . # _struct.entry_id 6GDR _struct.title 'DNA binding with a minimal scaffold: Structure-function analysis of Lig E DNA ligases' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.entry_id 6GDR _struct_keywords.text 'DNA ligases, ligase' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 7 ? I N N 7 ? J N N 7 ? K N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6GDR 6GDR ? 1 ? 1 2 PDB 6GDR 6GDR ? 2 ? 1 3 PDB 6GDR 6GDR ? 3 ? 1 4 UNP A0A1J0SCU0_9ALTE A0A1J0SCU0 ? 4 ;AEDKLDIVDGLQLAKQYSHSRQDINIAEYWVSEKLDGIRARWDGTELRTRNNNKIAAPAWFTANWPKATIDGELWIARGQ FERTASIVLSKLTSVAPHSVAGSLPRTESTVGAMTATHSLPSKRWAKIRFMAFDMPVAGQSFDSRLNMLNNLKEATPNPT FAVVSQFTLSSVNALEEKLEQVTLSGGEGLMLHHKKAFYHSGRSDKLLKVKQFEDAEAKVLAHLPGKGKFKGMMGSLLVE TPAGVQFKLGTGFSEKERQAPPAIGSWVTFKFYGVTKNGKPRFASFLRVRPPSDLPK ; 21 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6GDR B 1 ? 21 ? 6GDR 1 ? 21 ? 1 21 2 2 6GDR C 1 ? 10 ? 6GDR 22 ? 31 ? 22 31 3 3 6GDR D 1 ? 11 ? 6GDR 32 ? 42 ? 32 42 4 4 6GDR A 1 ? 297 ? A0A1J0SCU0 21 ? 317 ? 1 297 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 4 6GDR GLY A 1 ? UNP A0A1J0SCU0 ALA 21 conflict 1 1 4 6GDR HIS A 5 ? UNP A0A1J0SCU0 LEU 25 conflict 5 2 4 6GDR GLY A 18 ? UNP A0A1J0SCU0 SER 38 conflict 18 3 4 6GDR ASP A 56 ? UNP A0A1J0SCU0 ALA 76 conflict 56 4 4 6GDR GLN A 98 ? UNP A0A1J0SCU0 HIS 118 conflict 98 5 4 6GDR ASP A 112 ? UNP A0A1J0SCU0 GLY 132 conflict 112 6 4 6GDR VAL A 128 ? UNP A0A1J0SCU0 ILE 148 conflict 128 7 4 6GDR ILE A 208 ? UNP A0A1J0SCU0 LEU 228 conflict 208 8 4 6GDR PHE A 224 ? UNP A0A1J0SCU0 LEU 244 conflict 224 9 4 6GDR ALA A 225 ? UNP A0A1J0SCU0 PRO 245 conflict 225 10 4 6GDR ARG A 259 ? UNP A0A1J0SCU0 GLN 279 conflict 259 11 4 6GDR VAL A 264 ? UNP A0A1J0SCU0 ILE 284 conflict 264 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6660 ? 1 MORE -45 ? 1 'SSA (A^2)' 18040 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details 'have done MicroScale Thermophoresis' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN D 25 ? ALA D 27 ? ASN A 25 ALA A 27 5 ? 3 HELX_P HELX_P2 AA2 PRO D 58 ? ALA D 63 ? PRO A 58 ALA A 63 1 ? 6 HELX_P HELX_P3 AA3 GLN D 80 ? SER D 90 ? GLN A 80 SER A 90 1 ? 11 HELX_P HELX_P4 AA4 SER D 122 ? VAL D 128 ? SER A 122 VAL A 128 5 ? 7 HELX_P HELX_P5 AA5 SER D 141 ? ALA D 155 ? SER A 141 ALA A 155 1 ? 15 HELX_P HELX_P6 AA6 SER D 171 ? SER D 185 ? SER A 171 SER A 185 1 ? 15 HELX_P HELX_P7 AA7 LYS D 227 ? LYS D 231 ? LYS A 227 LYS A 231 5 ? 5 HELX_P HELX_P8 AA8 SER D 254 ? ARG D 259 ? SER A 254 ARG A 259 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? C DC 1 OP2 ? ? ? 1_555 G AMP . P ? ? D DC 32 D AMP 300 1_555 ? ? ? ? ? ? ? 1.616 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 C DA 11 N1 ? ? B DT 1 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 C DA 11 N6 ? ? B DT 1 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 2 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 2 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 N3 ? ? ? 1_555 C DG 9 N1 ? ? B DC 3 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N4 ? ? ? 1_555 C DG 9 O6 ? ? B DC 3 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 O2 ? ? ? 1_555 C DG 9 N2 ? ? B DC 3 D DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 4 D DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 4 D DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 4 D DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 5 D DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 5 D DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 5 D DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 6 D DT 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 6 D DT 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 7 D DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 7 D DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N1 ? ? ? 1_555 C DT 4 N3 ? ? B DA 8 D DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N6 ? ? ? 1_555 C DT 4 O4 ? ? B DA 8 D DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 9 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 9 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 9 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 10 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 10 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 10 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 10 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 11 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 11 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 11 D DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 12 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 12 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 12 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 13 C DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 13 C DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 13 C DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 14 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 14 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 14 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 7 N1 ? ? B DT 15 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 7 N6 ? ? B DT 15 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 6 N1 ? ? B DC 16 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 6 O6 ? ? B DC 16 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 16 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DG 17 N1 ? ? ? 1_555 B DC 5 N3 ? ? B DG 17 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 17 N2 ? ? ? 1_555 B DC 5 O2 ? ? B DG 17 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 17 O6 ? ? ? 1_555 B DC 5 N4 ? ? B DG 17 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 18 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 18 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 18 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DA 19 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 19 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DA 19 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 19 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DA 20 N1 ? ? ? 1_555 B DT 2 N3 ? ? B DA 20 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DA 20 N6 ? ? ? 1_555 B DT 2 O4 ? ? B DA 20 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DT 21 N3 ? ? ? 1_555 B DA 1 N1 ? ? B DT 21 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DT 21 O4 ? ? ? 1_555 B DA 1 N6 ? ? B DT 21 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 5 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS D 15 ? GLN D 16 ? LYS A 15 GLN A 16 AA1 2 LEU D 207 ? VAL D 210 ? LEU A 207 VAL A 210 AA1 3 GLY D 189 ? HIS D 194 ? GLY A 189 HIS A 194 AA1 4 TYR D 29 ? LYS D 34 ? TYR A 29 LYS A 34 AA2 1 LEU D 47 ? ARG D 48 ? LEU A 47 ARG A 48 AA2 2 ILE D 38 ? TRP D 42 ? ILE A 38 TRP A 42 AA2 3 ILE D 70 ? TRP D 75 ? ILE A 70 TRP A 75 AA2 4 ARG D 129 ? ASP D 134 ? ARG A 129 ASP A 134 AA2 5 PHE D 161 ? VAL D 163 ? PHE A 161 VAL A 163 AA3 1 GLN D 246 ? LEU D 249 ? GLN A 246 LEU A 249 AA3 2 MET D 234 ? GLU D 240 ? MET A 234 GLU A 240 AA3 3 GLU D 214 ? ALA D 225 ? GLU A 214 ALA A 225 AA3 4 TRP D 267 ? PHE D 272 ? TRP A 267 PHE A 272 AA3 5 SER D 285 ? VAL D 289 ? SER A 285 VAL A 289 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS D 15 ? N LYS A 15 O LYS D 209 ? O LYS A 209 AA1 2 3 O ILE D 208 ? O ILE A 208 N LEU D 192 ? N LEU A 192 AA1 3 4 O HIS D 193 ? O HIS A 193 N TRP D 30 ? N TRP A 30 AA2 1 2 O ARG D 48 ? O ARG A 48 N ARG D 41 ? N ARG A 41 AA2 2 3 N TRP D 42 ? N TRP A 42 O ILE D 70 ? O ILE A 70 AA2 3 4 N ASP D 71 ? N ASP A 71 O ASP D 134 ? O ASP A 134 AA2 4 5 N PHE D 130 ? N PHE A 130 O ALA D 162 ? O ALA A 162 AA3 1 2 O LEU D 249 ? O LEU A 249 N LEU D 237 ? N LEU A 237 AA3 2 3 O LEU D 238 ? O LEU A 238 N LEU D 221 ? N LEU A 221 AA3 3 4 N ALA D 218 ? N ALA A 218 O VAL D 268 ? O VAL A 268 AA3 4 5 N THR D 269 ? N THR A 269 O ARG D 288 ? O ARG A 288 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B PO4 101 ? 5 'binding site for residue PO4 B 101' AC2 Software B PO4 102 ? 6 'binding site for residue PO4 B 102' AC3 Software D AMP 300 ? 14 'binding site for residue AMP D 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DG A 11 ? DG B 11 . ? 1_555 ? 2 AC1 5 HOH H . ? HOH B 202 . ? 1_555 ? 3 AC1 5 HOH H . ? HOH B 203 . ? 1_555 ? 4 AC1 5 HOH H . ? HOH B 204 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH B 205 . ? 1_555 ? 6 AC2 6 DG A 13 ? DG B 13 . ? 1_555 ? 7 AC2 6 DG A 14 ? DG B 14 . ? 1_555 ? 8 AC2 6 HOH H . ? HOH B 201 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH B 206 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH B 208 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH B 210 . ? 1_555 ? 12 AC3 14 SER D 32 ? SER A 32 . ? 1_555 ? 13 AC3 14 GLU D 33 ? GLU A 33 . ? 1_555 ? 14 AC3 14 LYS D 34 ? LYS A 34 . ? 1_555 ? 15 AC3 14 LEU D 35 ? LEU A 35 . ? 1_555 ? 16 AC3 14 ARG D 39 ? ARG A 39 . ? 1_555 ? 17 AC3 14 ARG D 50 ? ARG A 50 . ? 1_555 ? 18 AC3 14 GLU D 73 ? GLU A 73 . ? 1_555 ? 19 AC3 14 PHE D 133 ? PHE A 133 . ? 1_555 ? 20 AC3 14 VAL D 164 ? VAL A 164 . ? 1_555 ? 21 AC3 14 MET D 191 ? MET A 191 . ? 1_555 ? 22 AC3 14 LYS D 209 ? LYS A 209 . ? 1_555 ? 23 AC3 14 DC C 1 ? DC D 32 . ? 1_555 ? 24 AC3 14 DA C 2 ? DA D 33 . ? 1_555 ? 25 AC3 14 HOH J . ? HOH D 408 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 B DG 5 ? ? HZ3 A LYS 15 ? ? 1.56 2 1 O1 B PO4 102 ? ? O B HOH 201 ? ? 1.99 3 1 O3 B PO4 101 ? ? O B HOH 202 ? ? 2.01 4 1 O1 B PO4 101 ? ? O B HOH 203 ? ? 2.02 5 1 OP2 D DT 37 ? ? O D HOH 401 ? ? 2.04 6 1 O2 B PO4 101 ? ? O B HOH 204 ? ? 2.05 7 1 O3 B PO4 101 ? ? O B HOH 205 ? ? 2.08 8 1 O4 B PO4 102 ? ? O B HOH 206 ? ? 2.11 9 1 OP2 B DG 5 ? ? NZ A LYS 15 ? ? 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" C DC 30 ? ? "C1'" C DC 30 ? ? 1.317 1.518 -0.201 0.010 N 2 1 "O4'" C DC 30 ? ? "C1'" C DC 30 ? ? 1.638 1.420 0.218 0.011 N 3 1 "O4'" C DC 30 ? ? "C4'" C DC 30 ? ? 1.289 1.446 -0.157 0.010 N 4 1 "O3'" C DC 30 ? ? "C3'" C DC 30 ? ? 1.328 1.419 -0.091 0.006 N 5 1 C4 C DC 30 ? ? N4 C DC 30 ? ? 1.413 1.335 0.078 0.009 N 6 1 N1 C DC 30 ? ? C6 C DC 30 ? ? 1.435 1.367 0.068 0.006 N 7 1 C2 C DC 30 ? ? N3 C DC 30 ? ? 1.465 1.353 0.112 0.008 N 8 1 N3 C DC 30 ? ? C4 C DC 30 ? ? 1.413 1.335 0.078 0.007 N 9 1 C4 C DC 30 ? ? C5 C DC 30 ? ? 1.474 1.425 0.049 0.008 N 10 1 C5 C DC 30 ? ? C6 C DC 30 ? ? 1.459 1.339 0.120 0.008 N 11 1 P D DC 32 ? ? OP3 D DC 32 ? ? 1.481 1.607 -0.126 0.012 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 9 ? ? -66.60 -86.73 2 1 ASP A 23 ? ? -130.91 -34.15 3 1 LYS A 67 ? ? -104.92 56.84 4 1 ILE A 76 ? ? -109.27 -66.82 5 1 PRO A 121 ? ? -44.30 160.42 6 1 SER A 170 ? ? -112.64 -85.65 7 1 ALA A 260 ? ? 60.40 70.88 8 1 TYR A 273 ? ? -112.72 76.52 9 1 LEU A 287 ? ? -111.95 -81.55 10 1 VAL A 289 ? ? -79.39 -157.76 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? D GLY 1 2 1 Y 1 A GLU 2 ? D GLU 2 3 1 Y 1 A ASP 3 ? D ASP 3 4 1 Y 1 A LYS 4 ? D LYS 4 5 1 Y 1 A HIS 5 ? D HIS 5 6 1 Y 1 A ASP 6 ? D ASP 6 7 1 Y 1 A SER 20 ? D SER 20 8 1 Y 1 A ARG 21 ? D ARG 21 9 1 Y 1 A SER 94 ? D SER 94 10 1 Y 1 A VAL 95 ? D VAL 95 11 1 Y 1 A ALA 96 ? D ALA 96 12 1 Y 1 A PRO 97 ? D PRO 97 13 1 Y 1 A GLN 98 ? D GLN 98 14 1 Y 1 A SER 99 ? D SER 99 15 1 Y 1 A VAL 100 ? D VAL 100 16 1 Y 1 A ALA 101 ? D ALA 101 17 1 Y 1 A GLY 102 ? D GLY 102 18 1 Y 1 A SER 103 ? D SER 103 19 1 Y 1 A LEU 104 ? D LEU 104 20 1 Y 1 A PRO 105 ? D PRO 105 21 1 Y 1 A ARG 106 ? D ARG 106 22 1 Y 1 A THR 107 ? D THR 107 23 1 Y 1 A GLU 108 ? D GLU 108 24 1 Y 1 A SER 109 ? D SER 109 25 1 Y 1 A THR 110 ? D THR 110 26 1 Y 1 A VAL 111 ? D VAL 111 27 1 Y 1 A ASP 112 ? D ASP 112 28 1 Y 1 A ALA 113 ? D ALA 113 29 1 Y 1 A MET 114 ? D MET 114 30 1 Y 1 A THR 115 ? D THR 115 31 1 Y 1 A ALA 116 ? D ALA 116 32 1 Y 1 A THR 117 ? D THR 117 33 1 Y 1 A HIS 118 ? D HIS 118 34 1 Y 1 A SER 119 ? D SER 119 35 1 Y 1 A PRO 291 ? D PRO 291 36 1 Y 1 A PRO 292 ? D PRO 292 37 1 Y 1 A SER 293 ? D SER 293 38 1 Y 1 A ASP 294 ? D ASP 294 39 1 Y 1 A LEU 295 ? D LEU 295 40 1 Y 1 A PRO 296 ? D PRO 296 41 1 Y 1 A LYS 297 ? D LYS 297 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 AMP P P N N 14 AMP O1P O N N 15 AMP O2P O N N 16 AMP O3P O N N 17 AMP "O5'" O N N 18 AMP "C5'" C N N 19 AMP "C4'" C N R 20 AMP "O4'" O N N 21 AMP "C3'" C N S 22 AMP "O3'" O N N 23 AMP "C2'" C N R 24 AMP "O2'" O N N 25 AMP "C1'" C N R 26 AMP N9 N Y N 27 AMP C8 C Y N 28 AMP N7 N Y N 29 AMP C5 C Y N 30 AMP C6 C Y N 31 AMP N6 N N N 32 AMP N1 N Y N 33 AMP C2 C Y N 34 AMP N3 N Y N 35 AMP C4 C Y N 36 AMP HOP2 H N N 37 AMP HOP3 H N N 38 AMP "H5'1" H N N 39 AMP "H5'2" H N N 40 AMP "H4'" H N N 41 AMP "H3'" H N N 42 AMP "HO3'" H N N 43 AMP "H2'" H N N 44 AMP "HO2'" H N N 45 AMP "H1'" H N N 46 AMP H8 H N N 47 AMP HN61 H N N 48 AMP HN62 H N N 49 AMP H2 H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 DA OP3 O N N 111 DA P P N N 112 DA OP1 O N N 113 DA OP2 O N N 114 DA "O5'" O N N 115 DA "C5'" C N N 116 DA "C4'" C N R 117 DA "O4'" O N N 118 DA "C3'" C N S 119 DA "O3'" O N N 120 DA "C2'" C N N 121 DA "C1'" C N R 122 DA N9 N Y N 123 DA C8 C Y N 124 DA N7 N Y N 125 DA C5 C Y N 126 DA C6 C Y N 127 DA N6 N N N 128 DA N1 N Y N 129 DA C2 C Y N 130 DA N3 N Y N 131 DA C4 C Y N 132 DA HOP3 H N N 133 DA HOP2 H N N 134 DA "H5'" H N N 135 DA "H5''" H N N 136 DA "H4'" H N N 137 DA "H3'" H N N 138 DA "HO3'" H N N 139 DA "H2'" H N N 140 DA "H2''" H N N 141 DA "H1'" H N N 142 DA H8 H N N 143 DA H61 H N N 144 DA H62 H N N 145 DA H2 H N N 146 DC OP3 O N N 147 DC P P N N 148 DC OP1 O N N 149 DC OP2 O N N 150 DC "O5'" O N N 151 DC "C5'" C N N 152 DC "C4'" C N R 153 DC "O4'" O N N 154 DC "C3'" C N S 155 DC "O3'" O N N 156 DC "C2'" C N N 157 DC "C1'" C N R 158 DC N1 N N N 159 DC C2 C N N 160 DC O2 O N N 161 DC N3 N N N 162 DC C4 C N N 163 DC N4 N N N 164 DC C5 C N N 165 DC C6 C N N 166 DC HOP3 H N N 167 DC HOP2 H N N 168 DC "H5'" H N N 169 DC "H5''" H N N 170 DC "H4'" H N N 171 DC "H3'" H N N 172 DC "HO3'" H N N 173 DC "H2'" H N N 174 DC "H2''" H N N 175 DC "H1'" H N N 176 DC H41 H N N 177 DC H42 H N N 178 DC H5 H N N 179 DC H6 H N N 180 DG OP3 O N N 181 DG P P N N 182 DG OP1 O N N 183 DG OP2 O N N 184 DG "O5'" O N N 185 DG "C5'" C N N 186 DG "C4'" C N R 187 DG "O4'" O N N 188 DG "C3'" C N S 189 DG "O3'" O N N 190 DG "C2'" C N N 191 DG "C1'" C N R 192 DG N9 N Y N 193 DG C8 C Y N 194 DG N7 N Y N 195 DG C5 C Y N 196 DG C6 C N N 197 DG O6 O N N 198 DG N1 N N N 199 DG C2 C N N 200 DG N2 N N N 201 DG N3 N N N 202 DG C4 C Y N 203 DG HOP3 H N N 204 DG HOP2 H N N 205 DG "H5'" H N N 206 DG "H5''" H N N 207 DG "H4'" H N N 208 DG "H3'" H N N 209 DG "HO3'" H N N 210 DG "H2'" H N N 211 DG "H2''" H N N 212 DG "H1'" H N N 213 DG H8 H N N 214 DG H1 H N N 215 DG H21 H N N 216 DG H22 H N N 217 DT OP3 O N N 218 DT P P N N 219 DT OP1 O N N 220 DT OP2 O N N 221 DT "O5'" O N N 222 DT "C5'" C N N 223 DT "C4'" C N R 224 DT "O4'" O N N 225 DT "C3'" C N S 226 DT "O3'" O N N 227 DT "C2'" C N N 228 DT "C1'" C N R 229 DT N1 N N N 230 DT C2 C N N 231 DT O2 O N N 232 DT N3 N N N 233 DT C4 C N N 234 DT O4 O N N 235 DT C5 C N N 236 DT C7 C N N 237 DT C6 C N N 238 DT HOP3 H N N 239 DT HOP2 H N N 240 DT "H5'" H N N 241 DT "H5''" H N N 242 DT "H4'" H N N 243 DT "H3'" H N N 244 DT "HO3'" H N N 245 DT "H2'" H N N 246 DT "H2''" H N N 247 DT "H1'" H N N 248 DT H3 H N N 249 DT H71 H N N 250 DT H72 H N N 251 DT H73 H N N 252 DT H6 H N N 253 GLN N N N N 254 GLN CA C N S 255 GLN C C N N 256 GLN O O N N 257 GLN CB C N N 258 GLN CG C N N 259 GLN CD C N N 260 GLN OE1 O N N 261 GLN NE2 N N N 262 GLN OXT O N N 263 GLN H H N N 264 GLN H2 H N N 265 GLN HA H N N 266 GLN HB2 H N N 267 GLN HB3 H N N 268 GLN HG2 H N N 269 GLN HG3 H N N 270 GLN HE21 H N N 271 GLN HE22 H N N 272 GLN HXT H N N 273 GLU N N N N 274 GLU CA C N S 275 GLU C C N N 276 GLU O O N N 277 GLU CB C N N 278 GLU CG C N N 279 GLU CD C N N 280 GLU OE1 O N N 281 GLU OE2 O N N 282 GLU OXT O N N 283 GLU H H N N 284 GLU H2 H N N 285 GLU HA H N N 286 GLU HB2 H N N 287 GLU HB3 H N N 288 GLU HG2 H N N 289 GLU HG3 H N N 290 GLU HE2 H N N 291 GLU HXT H N N 292 GLY N N N N 293 GLY CA C N N 294 GLY C C N N 295 GLY O O N N 296 GLY OXT O N N 297 GLY H H N N 298 GLY H2 H N N 299 GLY HA2 H N N 300 GLY HA3 H N N 301 GLY HXT H N N 302 HIS N N N N 303 HIS CA C N S 304 HIS C C N N 305 HIS O O N N 306 HIS CB C N N 307 HIS CG C Y N 308 HIS ND1 N Y N 309 HIS CD2 C Y N 310 HIS CE1 C Y N 311 HIS NE2 N Y N 312 HIS OXT O N N 313 HIS H H N N 314 HIS H2 H N N 315 HIS HA H N N 316 HIS HB2 H N N 317 HIS HB3 H N N 318 HIS HD1 H N N 319 HIS HD2 H N N 320 HIS HE1 H N N 321 HIS HE2 H N N 322 HIS HXT H N N 323 HOH O O N N 324 HOH H1 H N N 325 HOH H2 H N N 326 ILE N N N N 327 ILE CA C N S 328 ILE C C N N 329 ILE O O N N 330 ILE CB C N S 331 ILE CG1 C N N 332 ILE CG2 C N N 333 ILE CD1 C N N 334 ILE OXT O N N 335 ILE H H N N 336 ILE H2 H N N 337 ILE HA H N N 338 ILE HB H N N 339 ILE HG12 H N N 340 ILE HG13 H N N 341 ILE HG21 H N N 342 ILE HG22 H N N 343 ILE HG23 H N N 344 ILE HD11 H N N 345 ILE HD12 H N N 346 ILE HD13 H N N 347 ILE HXT H N N 348 LEU N N N N 349 LEU CA C N S 350 LEU C C N N 351 LEU O O N N 352 LEU CB C N N 353 LEU CG C N N 354 LEU CD1 C N N 355 LEU CD2 C N N 356 LEU OXT O N N 357 LEU H H N N 358 LEU H2 H N N 359 LEU HA H N N 360 LEU HB2 H N N 361 LEU HB3 H N N 362 LEU HG H N N 363 LEU HD11 H N N 364 LEU HD12 H N N 365 LEU HD13 H N N 366 LEU HD21 H N N 367 LEU HD22 H N N 368 LEU HD23 H N N 369 LEU HXT H N N 370 LYS N N N N 371 LYS CA C N S 372 LYS C C N N 373 LYS O O N N 374 LYS CB C N N 375 LYS CG C N N 376 LYS CD C N N 377 LYS CE C N N 378 LYS NZ N N N 379 LYS OXT O N N 380 LYS H H N N 381 LYS H2 H N N 382 LYS HA H N N 383 LYS HB2 H N N 384 LYS HB3 H N N 385 LYS HG2 H N N 386 LYS HG3 H N N 387 LYS HD2 H N N 388 LYS HD3 H N N 389 LYS HE2 H N N 390 LYS HE3 H N N 391 LYS HZ1 H N N 392 LYS HZ2 H N N 393 LYS HZ3 H N N 394 LYS HXT H N N 395 MET N N N N 396 MET CA C N S 397 MET C C N N 398 MET O O N N 399 MET CB C N N 400 MET CG C N N 401 MET SD S N N 402 MET CE C N N 403 MET OXT O N N 404 MET H H N N 405 MET H2 H N N 406 MET HA H N N 407 MET HB2 H N N 408 MET HB3 H N N 409 MET HG2 H N N 410 MET HG3 H N N 411 MET HE1 H N N 412 MET HE2 H N N 413 MET HE3 H N N 414 MET HXT H N N 415 PHE N N N N 416 PHE CA C N S 417 PHE C C N N 418 PHE O O N N 419 PHE CB C N N 420 PHE CG C Y N 421 PHE CD1 C Y N 422 PHE CD2 C Y N 423 PHE CE1 C Y N 424 PHE CE2 C Y N 425 PHE CZ C Y N 426 PHE OXT O N N 427 PHE H H N N 428 PHE H2 H N N 429 PHE HA H N N 430 PHE HB2 H N N 431 PHE HB3 H N N 432 PHE HD1 H N N 433 PHE HD2 H N N 434 PHE HE1 H N N 435 PHE HE2 H N N 436 PHE HZ H N N 437 PHE HXT H N N 438 PO4 P P N N 439 PO4 O1 O N N 440 PO4 O2 O N N 441 PO4 O3 O N N 442 PO4 O4 O N N 443 PRO N N N N 444 PRO CA C N S 445 PRO C C N N 446 PRO O O N N 447 PRO CB C N N 448 PRO CG C N N 449 PRO CD C N N 450 PRO OXT O N N 451 PRO H H N N 452 PRO HA H N N 453 PRO HB2 H N N 454 PRO HB3 H N N 455 PRO HG2 H N N 456 PRO HG3 H N N 457 PRO HD2 H N N 458 PRO HD3 H N N 459 PRO HXT H N N 460 SER N N N N 461 SER CA C N S 462 SER C C N N 463 SER O O N N 464 SER CB C N N 465 SER OG O N N 466 SER OXT O N N 467 SER H H N N 468 SER H2 H N N 469 SER HA H N N 470 SER HB2 H N N 471 SER HB3 H N N 472 SER HG H N N 473 SER HXT H N N 474 THR N N N N 475 THR CA C N S 476 THR C C N N 477 THR O O N N 478 THR CB C N R 479 THR OG1 O N N 480 THR CG2 C N N 481 THR OXT O N N 482 THR H H N N 483 THR H2 H N N 484 THR HA H N N 485 THR HB H N N 486 THR HG1 H N N 487 THR HG21 H N N 488 THR HG22 H N N 489 THR HG23 H N N 490 THR HXT H N N 491 TRP N N N N 492 TRP CA C N S 493 TRP C C N N 494 TRP O O N N 495 TRP CB C N N 496 TRP CG C Y N 497 TRP CD1 C Y N 498 TRP CD2 C Y N 499 TRP NE1 N Y N 500 TRP CE2 C Y N 501 TRP CE3 C Y N 502 TRP CZ2 C Y N 503 TRP CZ3 C Y N 504 TRP CH2 C Y N 505 TRP OXT O N N 506 TRP H H N N 507 TRP H2 H N N 508 TRP HA H N N 509 TRP HB2 H N N 510 TRP HB3 H N N 511 TRP HD1 H N N 512 TRP HE1 H N N 513 TRP HE3 H N N 514 TRP HZ2 H N N 515 TRP HZ3 H N N 516 TRP HH2 H N N 517 TRP HXT H N N 518 TYR N N N N 519 TYR CA C N S 520 TYR C C N N 521 TYR O O N N 522 TYR CB C N N 523 TYR CG C Y N 524 TYR CD1 C Y N 525 TYR CD2 C Y N 526 TYR CE1 C Y N 527 TYR CE2 C Y N 528 TYR CZ C Y N 529 TYR OH O N N 530 TYR OXT O N N 531 TYR H H N N 532 TYR H2 H N N 533 TYR HA H N N 534 TYR HB2 H N N 535 TYR HB3 H N N 536 TYR HD1 H N N 537 TYR HD2 H N N 538 TYR HE1 H N N 539 TYR HE2 H N N 540 TYR HH H N N 541 TYR HXT H N N 542 VAL N N N N 543 VAL CA C N S 544 VAL C C N N 545 VAL O O N N 546 VAL CB C N N 547 VAL CG1 C N N 548 VAL CG2 C N N 549 VAL OXT O N N 550 VAL H H N N 551 VAL H2 H N N 552 VAL HA H N N 553 VAL HB H N N 554 VAL HG11 H N N 555 VAL HG12 H N N 556 VAL HG13 H N N 557 VAL HG21 H N N 558 VAL HG22 H N N 559 VAL HG23 H N N 560 VAL HXT H N N 561 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 AMP P O1P doub N N 13 AMP P O2P sing N N 14 AMP P O3P sing N N 15 AMP P "O5'" sing N N 16 AMP O2P HOP2 sing N N 17 AMP O3P HOP3 sing N N 18 AMP "O5'" "C5'" sing N N 19 AMP "C5'" "C4'" sing N N 20 AMP "C5'" "H5'1" sing N N 21 AMP "C5'" "H5'2" sing N N 22 AMP "C4'" "O4'" sing N N 23 AMP "C4'" "C3'" sing N N 24 AMP "C4'" "H4'" sing N N 25 AMP "O4'" "C1'" sing N N 26 AMP "C3'" "O3'" sing N N 27 AMP "C3'" "C2'" sing N N 28 AMP "C3'" "H3'" sing N N 29 AMP "O3'" "HO3'" sing N N 30 AMP "C2'" "O2'" sing N N 31 AMP "C2'" "C1'" sing N N 32 AMP "C2'" "H2'" sing N N 33 AMP "O2'" "HO2'" sing N N 34 AMP "C1'" N9 sing N N 35 AMP "C1'" "H1'" sing N N 36 AMP N9 C8 sing Y N 37 AMP N9 C4 sing Y N 38 AMP C8 N7 doub Y N 39 AMP C8 H8 sing N N 40 AMP N7 C5 sing Y N 41 AMP C5 C6 sing Y N 42 AMP C5 C4 doub Y N 43 AMP C6 N6 sing N N 44 AMP C6 N1 doub Y N 45 AMP N6 HN61 sing N N 46 AMP N6 HN62 sing N N 47 AMP N1 C2 sing Y N 48 AMP C2 N3 doub Y N 49 AMP C2 H2 sing N N 50 AMP N3 C4 sing Y N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 DA OP3 P sing N N 109 DA OP3 HOP3 sing N N 110 DA P OP1 doub N N 111 DA P OP2 sing N N 112 DA P "O5'" sing N N 113 DA OP2 HOP2 sing N N 114 DA "O5'" "C5'" sing N N 115 DA "C5'" "C4'" sing N N 116 DA "C5'" "H5'" sing N N 117 DA "C5'" "H5''" sing N N 118 DA "C4'" "O4'" sing N N 119 DA "C4'" "C3'" sing N N 120 DA "C4'" "H4'" sing N N 121 DA "O4'" "C1'" sing N N 122 DA "C3'" "O3'" sing N N 123 DA "C3'" "C2'" sing N N 124 DA "C3'" "H3'" sing N N 125 DA "O3'" "HO3'" sing N N 126 DA "C2'" "C1'" sing N N 127 DA "C2'" "H2'" sing N N 128 DA "C2'" "H2''" sing N N 129 DA "C1'" N9 sing N N 130 DA "C1'" "H1'" sing N N 131 DA N9 C8 sing Y N 132 DA N9 C4 sing Y N 133 DA C8 N7 doub Y N 134 DA C8 H8 sing N N 135 DA N7 C5 sing Y N 136 DA C5 C6 sing Y N 137 DA C5 C4 doub Y N 138 DA C6 N6 sing N N 139 DA C6 N1 doub Y N 140 DA N6 H61 sing N N 141 DA N6 H62 sing N N 142 DA N1 C2 sing Y N 143 DA C2 N3 doub Y N 144 DA C2 H2 sing N N 145 DA N3 C4 sing Y N 146 DC OP3 P sing N N 147 DC OP3 HOP3 sing N N 148 DC P OP1 doub N N 149 DC P OP2 sing N N 150 DC P "O5'" sing N N 151 DC OP2 HOP2 sing N N 152 DC "O5'" "C5'" sing N N 153 DC "C5'" "C4'" sing N N 154 DC "C5'" "H5'" sing N N 155 DC "C5'" "H5''" sing N N 156 DC "C4'" "O4'" sing N N 157 DC "C4'" "C3'" sing N N 158 DC "C4'" "H4'" sing N N 159 DC "O4'" "C1'" sing N N 160 DC "C3'" "O3'" sing N N 161 DC "C3'" "C2'" sing N N 162 DC "C3'" "H3'" sing N N 163 DC "O3'" "HO3'" sing N N 164 DC "C2'" "C1'" sing N N 165 DC "C2'" "H2'" sing N N 166 DC "C2'" "H2''" sing N N 167 DC "C1'" N1 sing N N 168 DC "C1'" "H1'" sing N N 169 DC N1 C2 sing N N 170 DC N1 C6 sing N N 171 DC C2 O2 doub N N 172 DC C2 N3 sing N N 173 DC N3 C4 doub N N 174 DC C4 N4 sing N N 175 DC C4 C5 sing N N 176 DC N4 H41 sing N N 177 DC N4 H42 sing N N 178 DC C5 C6 doub N N 179 DC C5 H5 sing N N 180 DC C6 H6 sing N N 181 DG OP3 P sing N N 182 DG OP3 HOP3 sing N N 183 DG P OP1 doub N N 184 DG P OP2 sing N N 185 DG P "O5'" sing N N 186 DG OP2 HOP2 sing N N 187 DG "O5'" "C5'" sing N N 188 DG "C5'" "C4'" sing N N 189 DG "C5'" "H5'" sing N N 190 DG "C5'" "H5''" sing N N 191 DG "C4'" "O4'" sing N N 192 DG "C4'" "C3'" sing N N 193 DG "C4'" "H4'" sing N N 194 DG "O4'" "C1'" sing N N 195 DG "C3'" "O3'" sing N N 196 DG "C3'" "C2'" sing N N 197 DG "C3'" "H3'" sing N N 198 DG "O3'" "HO3'" sing N N 199 DG "C2'" "C1'" sing N N 200 DG "C2'" "H2'" sing N N 201 DG "C2'" "H2''" sing N N 202 DG "C1'" N9 sing N N 203 DG "C1'" "H1'" sing N N 204 DG N9 C8 sing Y N 205 DG N9 C4 sing Y N 206 DG C8 N7 doub Y N 207 DG C8 H8 sing N N 208 DG N7 C5 sing Y N 209 DG C5 C6 sing N N 210 DG C5 C4 doub Y N 211 DG C6 O6 doub N N 212 DG C6 N1 sing N N 213 DG N1 C2 sing N N 214 DG N1 H1 sing N N 215 DG C2 N2 sing N N 216 DG C2 N3 doub N N 217 DG N2 H21 sing N N 218 DG N2 H22 sing N N 219 DG N3 C4 sing N N 220 DT OP3 P sing N N 221 DT OP3 HOP3 sing N N 222 DT P OP1 doub N N 223 DT P OP2 sing N N 224 DT P "O5'" sing N N 225 DT OP2 HOP2 sing N N 226 DT "O5'" "C5'" sing N N 227 DT "C5'" "C4'" sing N N 228 DT "C5'" "H5'" sing N N 229 DT "C5'" "H5''" sing N N 230 DT "C4'" "O4'" sing N N 231 DT "C4'" "C3'" sing N N 232 DT "C4'" "H4'" sing N N 233 DT "O4'" "C1'" sing N N 234 DT "C3'" "O3'" sing N N 235 DT "C3'" "C2'" sing N N 236 DT "C3'" "H3'" sing N N 237 DT "O3'" "HO3'" sing N N 238 DT "C2'" "C1'" sing N N 239 DT "C2'" "H2'" sing N N 240 DT "C2'" "H2''" sing N N 241 DT "C1'" N1 sing N N 242 DT "C1'" "H1'" sing N N 243 DT N1 C2 sing N N 244 DT N1 C6 sing N N 245 DT C2 O2 doub N N 246 DT C2 N3 sing N N 247 DT N3 C4 sing N N 248 DT N3 H3 sing N N 249 DT C4 O4 doub N N 250 DT C4 C5 sing N N 251 DT C5 C7 sing N N 252 DT C5 C6 doub N N 253 DT C7 H71 sing N N 254 DT C7 H72 sing N N 255 DT C7 H73 sing N N 256 DT C6 H6 sing N N 257 GLN N CA sing N N 258 GLN N H sing N N 259 GLN N H2 sing N N 260 GLN CA C sing N N 261 GLN CA CB sing N N 262 GLN CA HA sing N N 263 GLN C O doub N N 264 GLN C OXT sing N N 265 GLN CB CG sing N N 266 GLN CB HB2 sing N N 267 GLN CB HB3 sing N N 268 GLN CG CD sing N N 269 GLN CG HG2 sing N N 270 GLN CG HG3 sing N N 271 GLN CD OE1 doub N N 272 GLN CD NE2 sing N N 273 GLN NE2 HE21 sing N N 274 GLN NE2 HE22 sing N N 275 GLN OXT HXT sing N N 276 GLU N CA sing N N 277 GLU N H sing N N 278 GLU N H2 sing N N 279 GLU CA C sing N N 280 GLU CA CB sing N N 281 GLU CA HA sing N N 282 GLU C O doub N N 283 GLU C OXT sing N N 284 GLU CB CG sing N N 285 GLU CB HB2 sing N N 286 GLU CB HB3 sing N N 287 GLU CG CD sing N N 288 GLU CG HG2 sing N N 289 GLU CG HG3 sing N N 290 GLU CD OE1 doub N N 291 GLU CD OE2 sing N N 292 GLU OE2 HE2 sing N N 293 GLU OXT HXT sing N N 294 GLY N CA sing N N 295 GLY N H sing N N 296 GLY N H2 sing N N 297 GLY CA C sing N N 298 GLY CA HA2 sing N N 299 GLY CA HA3 sing N N 300 GLY C O doub N N 301 GLY C OXT sing N N 302 GLY OXT HXT sing N N 303 HIS N CA sing N N 304 HIS N H sing N N 305 HIS N H2 sing N N 306 HIS CA C sing N N 307 HIS CA CB sing N N 308 HIS CA HA sing N N 309 HIS C O doub N N 310 HIS C OXT sing N N 311 HIS CB CG sing N N 312 HIS CB HB2 sing N N 313 HIS CB HB3 sing N N 314 HIS CG ND1 sing Y N 315 HIS CG CD2 doub Y N 316 HIS ND1 CE1 doub Y N 317 HIS ND1 HD1 sing N N 318 HIS CD2 NE2 sing Y N 319 HIS CD2 HD2 sing N N 320 HIS CE1 NE2 sing Y N 321 HIS CE1 HE1 sing N N 322 HIS NE2 HE2 sing N N 323 HIS OXT HXT sing N N 324 HOH O H1 sing N N 325 HOH O H2 sing N N 326 ILE N CA sing N N 327 ILE N H sing N N 328 ILE N H2 sing N N 329 ILE CA C sing N N 330 ILE CA CB sing N N 331 ILE CA HA sing N N 332 ILE C O doub N N 333 ILE C OXT sing N N 334 ILE CB CG1 sing N N 335 ILE CB CG2 sing N N 336 ILE CB HB sing N N 337 ILE CG1 CD1 sing N N 338 ILE CG1 HG12 sing N N 339 ILE CG1 HG13 sing N N 340 ILE CG2 HG21 sing N N 341 ILE CG2 HG22 sing N N 342 ILE CG2 HG23 sing N N 343 ILE CD1 HD11 sing N N 344 ILE CD1 HD12 sing N N 345 ILE CD1 HD13 sing N N 346 ILE OXT HXT sing N N 347 LEU N CA sing N N 348 LEU N H sing N N 349 LEU N H2 sing N N 350 LEU CA C sing N N 351 LEU CA CB sing N N 352 LEU CA HA sing N N 353 LEU C O doub N N 354 LEU C OXT sing N N 355 LEU CB CG sing N N 356 LEU CB HB2 sing N N 357 LEU CB HB3 sing N N 358 LEU CG CD1 sing N N 359 LEU CG CD2 sing N N 360 LEU CG HG sing N N 361 LEU CD1 HD11 sing N N 362 LEU CD1 HD12 sing N N 363 LEU CD1 HD13 sing N N 364 LEU CD2 HD21 sing N N 365 LEU CD2 HD22 sing N N 366 LEU CD2 HD23 sing N N 367 LEU OXT HXT sing N N 368 LYS N CA sing N N 369 LYS N H sing N N 370 LYS N H2 sing N N 371 LYS CA C sing N N 372 LYS CA CB sing N N 373 LYS CA HA sing N N 374 LYS C O doub N N 375 LYS C OXT sing N N 376 LYS CB CG sing N N 377 LYS CB HB2 sing N N 378 LYS CB HB3 sing N N 379 LYS CG CD sing N N 380 LYS CG HG2 sing N N 381 LYS CG HG3 sing N N 382 LYS CD CE sing N N 383 LYS CD HD2 sing N N 384 LYS CD HD3 sing N N 385 LYS CE NZ sing N N 386 LYS CE HE2 sing N N 387 LYS CE HE3 sing N N 388 LYS NZ HZ1 sing N N 389 LYS NZ HZ2 sing N N 390 LYS NZ HZ3 sing N N 391 LYS OXT HXT sing N N 392 MET N CA sing N N 393 MET N H sing N N 394 MET N H2 sing N N 395 MET CA C sing N N 396 MET CA CB sing N N 397 MET CA HA sing N N 398 MET C O doub N N 399 MET C OXT sing N N 400 MET CB CG sing N N 401 MET CB HB2 sing N N 402 MET CB HB3 sing N N 403 MET CG SD sing N N 404 MET CG HG2 sing N N 405 MET CG HG3 sing N N 406 MET SD CE sing N N 407 MET CE HE1 sing N N 408 MET CE HE2 sing N N 409 MET CE HE3 sing N N 410 MET OXT HXT sing N N 411 PHE N CA sing N N 412 PHE N H sing N N 413 PHE N H2 sing N N 414 PHE CA C sing N N 415 PHE CA CB sing N N 416 PHE CA HA sing N N 417 PHE C O doub N N 418 PHE C OXT sing N N 419 PHE CB CG sing N N 420 PHE CB HB2 sing N N 421 PHE CB HB3 sing N N 422 PHE CG CD1 doub Y N 423 PHE CG CD2 sing Y N 424 PHE CD1 CE1 sing Y N 425 PHE CD1 HD1 sing N N 426 PHE CD2 CE2 doub Y N 427 PHE CD2 HD2 sing N N 428 PHE CE1 CZ doub Y N 429 PHE CE1 HE1 sing N N 430 PHE CE2 CZ sing Y N 431 PHE CE2 HE2 sing N N 432 PHE CZ HZ sing N N 433 PHE OXT HXT sing N N 434 PO4 P O1 doub N N 435 PO4 P O2 sing N N 436 PO4 P O3 sing N N 437 PO4 P O4 sing N N 438 PRO N CA sing N N 439 PRO N CD sing N N 440 PRO N H sing N N 441 PRO CA C sing N N 442 PRO CA CB sing N N 443 PRO CA HA sing N N 444 PRO C O doub N N 445 PRO C OXT sing N N 446 PRO CB CG sing N N 447 PRO CB HB2 sing N N 448 PRO CB HB3 sing N N 449 PRO CG CD sing N N 450 PRO CG HG2 sing N N 451 PRO CG HG3 sing N N 452 PRO CD HD2 sing N N 453 PRO CD HD3 sing N N 454 PRO OXT HXT sing N N 455 SER N CA sing N N 456 SER N H sing N N 457 SER N H2 sing N N 458 SER CA C sing N N 459 SER CA CB sing N N 460 SER CA HA sing N N 461 SER C O doub N N 462 SER C OXT sing N N 463 SER CB OG sing N N 464 SER CB HB2 sing N N 465 SER CB HB3 sing N N 466 SER OG HG sing N N 467 SER OXT HXT sing N N 468 THR N CA sing N N 469 THR N H sing N N 470 THR N H2 sing N N 471 THR CA C sing N N 472 THR CA CB sing N N 473 THR CA HA sing N N 474 THR C O doub N N 475 THR C OXT sing N N 476 THR CB OG1 sing N N 477 THR CB CG2 sing N N 478 THR CB HB sing N N 479 THR OG1 HG1 sing N N 480 THR CG2 HG21 sing N N 481 THR CG2 HG22 sing N N 482 THR CG2 HG23 sing N N 483 THR OXT HXT sing N N 484 TRP N CA sing N N 485 TRP N H sing N N 486 TRP N H2 sing N N 487 TRP CA C sing N N 488 TRP CA CB sing N N 489 TRP CA HA sing N N 490 TRP C O doub N N 491 TRP C OXT sing N N 492 TRP CB CG sing N N 493 TRP CB HB2 sing N N 494 TRP CB HB3 sing N N 495 TRP CG CD1 doub Y N 496 TRP CG CD2 sing Y N 497 TRP CD1 NE1 sing Y N 498 TRP CD1 HD1 sing N N 499 TRP CD2 CE2 doub Y N 500 TRP CD2 CE3 sing Y N 501 TRP NE1 CE2 sing Y N 502 TRP NE1 HE1 sing N N 503 TRP CE2 CZ2 sing Y N 504 TRP CE3 CZ3 doub Y N 505 TRP CE3 HE3 sing N N 506 TRP CZ2 CH2 doub Y N 507 TRP CZ2 HZ2 sing N N 508 TRP CZ3 CH2 sing Y N 509 TRP CZ3 HZ3 sing N N 510 TRP CH2 HH2 sing N N 511 TRP OXT HXT sing N N 512 TYR N CA sing N N 513 TYR N H sing N N 514 TYR N H2 sing N N 515 TYR CA C sing N N 516 TYR CA CB sing N N 517 TYR CA HA sing N N 518 TYR C O doub N N 519 TYR C OXT sing N N 520 TYR CB CG sing N N 521 TYR CB HB2 sing N N 522 TYR CB HB3 sing N N 523 TYR CG CD1 doub Y N 524 TYR CG CD2 sing Y N 525 TYR CD1 CE1 sing Y N 526 TYR CD1 HD1 sing N N 527 TYR CD2 CE2 doub Y N 528 TYR CD2 HD2 sing N N 529 TYR CE1 CZ doub Y N 530 TYR CE1 HE1 sing N N 531 TYR CE2 CZ sing Y N 532 TYR CE2 HE2 sing N N 533 TYR CZ OH sing N N 534 TYR OH HH sing N N 535 TYR OXT HXT sing N N 536 VAL N CA sing N N 537 VAL N H sing N N 538 VAL N H2 sing N N 539 VAL CA C sing N N 540 VAL CA CB sing N N 541 VAL CA HA sing N N 542 VAL C O doub N N 543 VAL C OXT sing N N 544 VAL CB CG1 sing N N 545 VAL CB CG2 sing N N 546 VAL CB HB sing N N 547 VAL CG1 HG11 sing N N 548 VAL CG1 HG12 sing N N 549 VAL CG1 HG13 sing N N 550 VAL CG2 HG21 sing N N 551 VAL CG2 HG22 sing N N 552 VAL CG2 HG23 sing N N 553 VAL OXT HXT sing N N 554 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6GDR 'double helix' 6GDR 'a-form double helix' 6GDR 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 C DA 11 1_555 -0.157 -0.208 0.451 -9.600 -18.551 -2.759 1 B_DT1:DA42_D B 1 ? D 42 ? 20 1 1 A DT 2 1_555 C DA 10 1_555 -0.304 -0.140 0.238 -0.805 -18.922 -6.140 2 B_DT2:DA41_D B 2 ? D 41 ? 20 1 1 A DC 3 1_555 C DG 9 1_555 0.979 0.131 0.511 -8.776 -14.340 10.240 3 B_DC3:DG40_D B 3 ? D 40 ? 19 1 1 A DC 4 1_555 C DG 8 1_555 0.102 0.024 0.955 -16.786 -13.634 2.924 4 B_DC4:DG39_D B 4 ? D 39 ? 19 1 1 A DG 5 1_555 C DC 7 1_555 -0.041 -0.123 0.283 0.819 -11.221 2.845 5 B_DG5:DC38_D B 5 ? D 38 ? 19 1 1 A DA 6 1_555 C DT 6 1_555 0.214 -0.176 -0.206 -4.194 -6.772 -1.004 6 B_DA6:DT37_D B 6 ? D 37 ? 20 1 1 A DT 7 1_555 C DA 5 1_555 0.346 -0.222 0.110 4.109 -5.204 2.254 7 B_DT7:DA36_D B 7 ? D 36 ? 20 1 1 A DA 8 1_555 C DT 4 1_555 0.188 -0.150 0.197 3.606 -10.199 -2.655 8 B_DA8:DT35_D B 8 ? D 35 ? 20 1 1 A DG 9 1_555 C DC 3 1_555 -0.431 0.004 0.383 12.634 -10.080 8.401 9 B_DG9:DC34_D B 9 ? D 34 ? 19 1 1 A DT 10 1_555 C DA 2 1_555 -0.390 -0.070 -0.003 10.372 -23.554 -4.725 10 B_DT10:DA33_D B 10 ? D 33 ? 20 1 1 A DG 11 1_555 C DC 1 1_555 -0.126 -0.288 0.361 -1.511 -14.600 1.451 11 B_DG11:DC32_D B 11 ? D 32 ? 19 1 1 A DG 12 1_555 B DC 10 1_555 -0.243 -0.143 0.372 -0.526 -17.182 -0.087 12 B_DG12:DC31_C B 12 ? C 31 ? 19 1 1 A DG 13 1_555 B DC 9 1_555 -0.339 0.043 -0.215 0.532 -18.122 1.340 13 B_DG13:DC30_C B 13 ? C 30 ? 19 1 1 A DG 14 1_555 B DC 8 1_555 0.304 -0.216 0.416 -0.255 -18.761 -4.258 14 B_DG14:DC29_C B 14 ? C 29 ? 19 1 1 A DT 15 1_555 B DA 7 1_555 -0.292 -0.086 0.183 -3.600 -11.831 0.985 15 B_DT15:DA28_C B 15 ? C 28 ? 20 1 1 A DC 16 1_555 B DG 6 1_555 0.131 -0.079 0.239 -5.029 -8.915 -2.231 16 B_DC16:DG27_C B 16 ? C 27 ? 19 1 1 A DG 17 1_555 B DC 5 1_555 -0.482 0.108 0.150 7.351 -8.218 11.516 17 B_DG17:DC26_C B 17 ? C 26 ? 19 1 1 A DC 18 1_555 B DG 4 1_555 0.038 0.003 0.094 12.806 -9.200 -0.404 18 B_DC18:DG25_C B 18 ? C 25 ? 19 1 1 A DA 19 1_555 B DT 3 1_555 0.327 -0.136 0.405 9.545 -15.357 -1.186 19 B_DA19:DT24_C B 19 ? C 24 ? 20 1 1 A DA 20 1_555 B DT 2 1_555 0.651 -0.330 -0.222 1.851 -14.608 -0.945 20 B_DA20:DT23_C B 20 ? C 23 ? 20 1 1 A DT 21 1_555 B DA 1 1_555 0.493 0.126 0.322 -5.374 -11.801 -1.919 21 B_DT21:DA22_C B 21 ? C 22 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 C DA 11 1_555 A DT 2 1_555 C DA 10 1_555 0.185 -0.665 2.948 4.727 -1.480 38.373 -0.839 0.248 2.971 -2.240 -7.156 38.679 1 BB_DT1DT2:DA41DA42_DD B 1 ? D 42 ? B 2 ? D 41 ? 1 A DT 2 1_555 C DA 10 1_555 A DC 3 1_555 C DG 9 1_555 1.298 0.127 3.487 4.044 -6.458 43.586 0.821 -1.317 3.535 -8.619 -5.397 44.215 2 BB_DT2DC3:DG40DA41_DD B 2 ? D 41 ? B 3 ? D 40 ? 1 A DC 3 1_555 C DG 9 1_555 A DC 4 1_555 C DG 8 1_555 -0.692 0.046 3.585 -3.210 -2.087 34.071 0.440 0.617 3.624 -3.549 5.456 34.279 3 BB_DC3DC4:DG39DG40_DD B 3 ? D 40 ? B 4 ? D 39 ? 1 A DC 4 1_555 C DG 8 1_555 A DG 5 1_555 C DC 7 1_555 0.167 0.795 2.993 2.626 -2.050 35.131 1.588 0.079 2.947 -3.387 -4.339 35.284 4 BB_DC4DG5:DC38DG39_DD B 4 ? D 39 ? B 5 ? D 38 ? 1 A DG 5 1_555 C DC 7 1_555 A DA 6 1_555 C DT 6 1_555 -0.385 -0.250 3.494 0.310 10.040 32.705 -2.107 0.707 3.274 17.327 -0.535 34.173 5 BB_DG5DA6:DT37DC38_DD B 5 ? D 38 ? B 6 ? D 37 ? 1 A DA 6 1_555 C DT 6 1_555 A DT 7 1_555 C DA 5 1_555 -0.125 -0.922 3.149 -1.852 5.339 32.053 -2.524 -0.081 2.964 9.576 3.322 32.535 6 BB_DA6DT7:DA36DT37_DD B 6 ? D 37 ? B 7 ? D 36 ? 1 A DT 7 1_555 C DA 5 1_555 A DA 8 1_555 C DT 4 1_555 -0.434 -0.575 3.202 -1.382 7.309 29.723 -2.478 0.559 2.995 13.973 2.643 30.620 7 BB_DT7DA8:DT35DA36_DD B 7 ? D 36 ? B 8 ? D 35 ? 1 A DA 8 1_555 C DT 4 1_555 A DG 9 1_555 C DC 3 1_555 1.150 -0.799 3.148 -1.867 4.923 28.611 -2.595 -2.672 2.893 9.855 3.737 29.082 8 BB_DA8DG9:DC34DT35_DD B 8 ? D 35 ? B 9 ? D 34 ? 1 A DG 9 1_555 C DC 3 1_555 A DT 10 1_555 C DA 2 1_555 -0.936 -1.196 3.296 -1.066 -0.227 30.351 -2.236 1.569 3.335 -0.434 2.035 30.370 9 BB_DG9DT10:DA33DC34_DD B 9 ? D 34 ? B 10 ? D 33 ? 1 A DT 10 1_555 C DA 2 1_555 A DG 11 1_555 C DC 1 1_555 0.198 -1.268 3.385 -2.922 13.243 37.246 -3.384 -0.625 2.772 19.942 4.400 39.555 10 BB_DT10DG11:DC32DA33_DD B 10 ? D 33 ? B 11 ? D 32 ? 1 A DG 11 1_555 C DC 1 1_555 A DG 12 1_555 B DC 10 1_555 -1.906 -2.121 3.224 -5.756 2.812 17.357 -8.178 2.700 3.296 8.933 18.284 18.493 11 BB_DG11DG12:DC31DC32_CD B 11 ? D 32 ? B 12 ? C 31 ? 1 A DG 12 1_555 B DC 10 1_555 A DG 13 1_555 B DC 9 1_555 -0.829 -1.012 3.172 -0.581 15.925 33.976 -3.481 1.222 2.484 25.580 0.934 37.428 12 BB_DG12DG13:DC30DC31_CC B 12 ? C 31 ? B 13 ? C 30 ? 1 A DG 13 1_555 B DC 9 1_555 A DG 14 1_555 B DC 8 1_555 0.055 -0.726 3.299 -6.549 5.328 38.717 -1.692 -0.844 3.126 7.923 9.737 39.592 13 BB_DG13DG14:DC29DC30_CC B 13 ? C 30 ? B 14 ? C 29 ? 1 A DG 14 1_555 B DC 8 1_555 A DT 15 1_555 B DA 7 1_555 0.230 -0.801 3.245 3.785 0.413 28.343 -1.716 0.389 3.236 0.839 -7.685 28.592 14 BB_DG14DT15:DA28DC29_CC B 14 ? C 29 ? B 15 ? C 28 ? 1 A DT 15 1_555 B DA 7 1_555 A DC 16 1_555 B DG 6 1_555 -0.261 -0.117 3.315 -0.226 6.801 36.992 -1.077 0.375 3.245 10.609 0.353 37.591 15 BB_DT15DC16:DG27DA28_CC B 15 ? C 28 ? B 16 ? C 27 ? 1 A DC 16 1_555 B DG 6 1_555 A DG 17 1_555 B DC 5 1_555 0.806 0.309 2.978 0.565 7.896 30.663 -0.784 -1.382 2.977 14.627 -1.047 31.645 16 BB_DC16DG17:DC26DG27_CC B 16 ? C 27 ? B 17 ? C 26 ? 1 A DG 17 1_555 B DC 5 1_555 A DC 18 1_555 B DG 4 1_555 -0.600 0.201 3.201 -2.659 -2.706 36.429 0.685 0.596 3.213 -4.313 4.239 36.619 17 BB_DG17DC18:DG25DC26_CC B 17 ? C 26 ? B 18 ? C 25 ? 1 A DC 18 1_555 B DG 4 1_555 A DA 19 1_555 B DT 3 1_555 -0.284 -0.112 3.319 -1.862 0.709 38.867 -0.255 0.197 3.326 1.064 2.796 38.916 18 BB_DC18DA19:DT24DG25_CC B 18 ? C 25 ? B 19 ? C 24 ? 1 A DA 19 1_555 B DT 3 1_555 A DA 20 1_555 B DT 2 1_555 -0.299 -0.534 3.455 3.426 -4.858 36.456 -0.145 0.964 3.454 -7.702 -5.432 36.921 19 BB_DA19DA20:DT23DT24_CC B 19 ? C 24 ? B 20 ? C 23 ? 1 A DA 20 1_555 B DT 2 1_555 A DT 21 1_555 B DA 1 1_555 0.326 -1.393 3.424 -2.125 -2.755 35.669 -1.844 -0.853 3.494 -4.485 3.459 35.832 20 BB_DA20DT21:DA22DT23_CC B 20 ? C 23 ? B 21 ? C 22 ? # _pdbx_audit_support.funding_organization 'Research Council of Norway' _pdbx_audit_support.country Norway _pdbx_audit_support.grant_number 244247 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Homology model' # _atom_sites.entry_id 6GDR _atom_sites.fract_transf_matrix[1][1] 0.015379 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001297 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014044 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008566 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_