HEADER METAL BINDING PROTEIN 24-APR-18 6GDU TITLE STRUCTURE OF CUTA FROM SYNECHOCOCCUS ELONGATUS PCC7942 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC DIVALENT CATION TOLERANCE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS (STRAIN PCC 7942); SOURCE 3 ORGANISM_COMMON: ANACYSTIS NIDULANS R2; SOURCE 4 ORGANISM_TAXID: 1140; SOURCE 5 STRAIN: PCC 7942; SOURCE 6 GENE: SYNPCC7942_2261; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALLEGED COPPER BINDING PROTEIN, PII SUPERFAMILY, THERMOSTABLE KEYWDS 2 PROTEIN, FERREDOXIN FOLD, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.TREMINO,V.RUBIO REVDAT 4 17-JAN-24 6GDU 1 REMARK REVDAT 3 02-JUN-21 6GDU 1 REMARK REVDAT 2 22-JUL-20 6GDU 1 JRNL REVDAT 1 08-MAY-19 6GDU 0 JRNL AUTH K.A.SELIM,L.TREMINO,C.MARCO-MARIN,V.ALVA,J.ESPINOSA, JRNL AUTH 2 A.CONTRERAS,M.D.HARTMANN,K.FORCHHAMMER,V.RUBIO JRNL TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF PII-LIKE JRNL TITL 2 PROTEIN CUTA DOES NOT SUPPORT INVOLVEMENT IN HEAVY METAL JRNL TITL 3 TOLERANCE AND HINTS AT A SMALL-MOLECULE CARRYING/SIGNALING JRNL TITL 4 ROLE. JRNL REF FEBS J. 2020 JRNL REFN ISSN 1742-464X JRNL PMID 32599651 JRNL DOI 10.1111/FEBS.15464 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2462 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : 0.78000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2504 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2365 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3433 ; 1.595 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5421 ; 0.923 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 5.959 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;40.547 ;25.319 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;11.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 9.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2831 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 529 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1305 ; 0.674 ; 1.439 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1304 ; 0.673 ; 1.438 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1626 ; 1.064 ; 2.152 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1627 ; 1.064 ; 2.153 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1199 ; 1.142 ; 1.640 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1200 ; 1.141 ; 1.641 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1808 ; 1.778 ; 2.405 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2738 ; 4.343 ;12.572 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2701 ; 4.258 ;12.326 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3385 -26.0545 -17.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.0175 REMARK 3 T33: 0.0771 T12: -0.0072 REMARK 3 T13: -0.0114 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.8674 L22: 0.9937 REMARK 3 L33: 2.5299 L12: 0.4465 REMARK 3 L13: 0.2513 L23: 0.8014 REMARK 3 S TENSOR REMARK 3 S11: 0.1360 S12: -0.1413 S13: -0.3314 REMARK 3 S21: 0.0971 S22: -0.0130 S23: -0.0619 REMARK 3 S31: 0.3185 S32: -0.0612 S33: -0.1229 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5125 -7.9100 -12.1161 REMARK 3 T TENSOR REMARK 3 T11: 0.1122 T22: 0.0412 REMARK 3 T33: 0.0486 T12: 0.0094 REMARK 3 T13: 0.0279 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 1.9764 L22: 1.6521 REMARK 3 L33: 3.0224 L12: 0.1006 REMARK 3 L13: -0.3384 L23: -0.6487 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: -0.2560 S13: 0.2996 REMARK 3 S21: 0.0082 S22: 0.0134 S23: 0.0052 REMARK 3 S31: -0.1961 S32: -0.1038 S33: -0.0760 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 112 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8921 -13.2818 -30.4203 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.0150 REMARK 3 T33: 0.0099 T12: 0.0123 REMARK 3 T13: 0.0277 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.6658 L22: 0.9294 REMARK 3 L33: 3.0625 L12: 0.5250 REMARK 3 L13: -0.1184 L23: -0.2265 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: 0.1575 S13: -0.0395 REMARK 3 S21: -0.0526 S22: 0.0496 S23: 0.0221 REMARK 3 S31: -0.0947 S32: -0.1316 S33: -0.0836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32752 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 48.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GDV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MIB BUFFER PH 4, 25% PEG 1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.18550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 LEU B 4 REMARK 465 SER B 5 REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 LEU C 4 REMARK 465 SER C 5 REMARK 465 SER C 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 SER A 5 OG REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 GLN A 82 CG CD OE1 NE2 REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 59 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 79 CG CD OE1 NE2 REMARK 470 GLN B 82 CG CD OE1 NE2 REMARK 470 ASP B 106 CG OD1 OD2 REMARK 470 GLU C 9 CG CD OE1 OE2 REMARK 470 ARG C 52 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 54 CG CD OE1 NE2 REMARK 470 ARG C 59 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 72 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 12 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP C 12 CB - CG - OD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ASP C 12 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS C 85 65.52 -150.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 242 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 243 DISTANCE = 6.36 ANGSTROMS DBREF 6GDU A 1 113 UNP Q31KX8 Q31KX8_SYNE7 1 113 DBREF 6GDU B 1 113 UNP Q31KX8 Q31KX8_SYNE7 1 113 DBREF 6GDU C 1 113 UNP Q31KX8 Q31KX8_SYNE7 1 113 SEQADV 6GDU MET A -19 UNP Q31KX8 INITIATING METHIONINE SEQADV 6GDU GLY A -18 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER A -17 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER A -16 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS A -15 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS A -14 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS A -13 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS A -12 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS A -11 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS A -10 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER A -9 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER A -8 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU GLY A -7 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU LEU A -6 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU VAL A -5 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU PRO A -4 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU ARG A -3 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU GLY A -2 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER A -1 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS A 0 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU MET B -19 UNP Q31KX8 INITIATING METHIONINE SEQADV 6GDU GLY B -18 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER B -17 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER B -16 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS B -15 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS B -14 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS B -13 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS B -12 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS B -11 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS B -10 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER B -9 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER B -8 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU GLY B -7 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU LEU B -6 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU VAL B -5 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU PRO B -4 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU ARG B -3 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU GLY B -2 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER B -1 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS B 0 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU MET C -19 UNP Q31KX8 INITIATING METHIONINE SEQADV 6GDU GLY C -18 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER C -17 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER C -16 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS C -15 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS C -14 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS C -13 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS C -12 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS C -11 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS C -10 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER C -9 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER C -8 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU GLY C -7 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU LEU C -6 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU VAL C -5 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU PRO C -4 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU ARG C -3 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU GLY C -2 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU SER C -1 UNP Q31KX8 EXPRESSION TAG SEQADV 6GDU HIS C 0 UNP Q31KX8 EXPRESSION TAG SEQRES 1 A 133 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 133 LEU VAL PRO ARG GLY SER HIS MET THR ASP LEU SER SER SEQRES 3 A 133 LEU ILE GLU THR ALA ASP LEU ARG LEU LEU LEU THR THR SEQRES 4 A 133 VAL SER THR GLU VAL GLU ALA GLN GLN LEU ALA GLN ALA SEQRES 5 A 133 ALA VAL GLU ALA GLY LEU ALA ALA CYS VAL SER ILE THR SEQRES 6 A 133 PRO ILE GLN SER CYS TYR ARG TRP GLN GLY ALA ILE ALA SEQRES 7 A 133 ARG GLU THR GLU GLN GLN MET SER PHE LYS THR THR VAL SEQRES 8 A 133 GLU GLN LEU ASP ALA LEU GLN GLN TRP LEU GLN SER GLN SEQRES 9 A 133 HIS PRO TYR ALA LEU PRO GLU CYS LEU VAL LEU THR PRO SEQRES 10 A 133 ILE ALA SER SER VAL ALA TYR ARG ASP TRP LEU ARG SER SEQRES 11 A 133 SER LEU SER SEQRES 1 B 133 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 133 LEU VAL PRO ARG GLY SER HIS MET THR ASP LEU SER SER SEQRES 3 B 133 LEU ILE GLU THR ALA ASP LEU ARG LEU LEU LEU THR THR SEQRES 4 B 133 VAL SER THR GLU VAL GLU ALA GLN GLN LEU ALA GLN ALA SEQRES 5 B 133 ALA VAL GLU ALA GLY LEU ALA ALA CYS VAL SER ILE THR SEQRES 6 B 133 PRO ILE GLN SER CYS TYR ARG TRP GLN GLY ALA ILE ALA SEQRES 7 B 133 ARG GLU THR GLU GLN GLN MET SER PHE LYS THR THR VAL SEQRES 8 B 133 GLU GLN LEU ASP ALA LEU GLN GLN TRP LEU GLN SER GLN SEQRES 9 B 133 HIS PRO TYR ALA LEU PRO GLU CYS LEU VAL LEU THR PRO SEQRES 10 B 133 ILE ALA SER SER VAL ALA TYR ARG ASP TRP LEU ARG SER SEQRES 11 B 133 SER LEU SER SEQRES 1 C 133 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 133 LEU VAL PRO ARG GLY SER HIS MET THR ASP LEU SER SER SEQRES 3 C 133 LEU ILE GLU THR ALA ASP LEU ARG LEU LEU LEU THR THR SEQRES 4 C 133 VAL SER THR GLU VAL GLU ALA GLN GLN LEU ALA GLN ALA SEQRES 5 C 133 ALA VAL GLU ALA GLY LEU ALA ALA CYS VAL SER ILE THR SEQRES 6 C 133 PRO ILE GLN SER CYS TYR ARG TRP GLN GLY ALA ILE ALA SEQRES 7 C 133 ARG GLU THR GLU GLN GLN MET SER PHE LYS THR THR VAL SEQRES 8 C 133 GLU GLN LEU ASP ALA LEU GLN GLN TRP LEU GLN SER GLN SEQRES 9 C 133 HIS PRO TYR ALA LEU PRO GLU CYS LEU VAL LEU THR PRO SEQRES 10 C 133 ILE ALA SER SER VAL ALA TYR ARG ASP TRP LEU ARG SER SEQRES 11 C 133 SER LEU SER FORMUL 4 HOH *122(H2 O) HELIX 1 AA1 THR A 22 ALA A 36 1 15 HELIX 2 AA2 VAL A 71 HIS A 85 1 15 HELIX 3 AA3 VAL A 102 LEU A 112 1 11 HELIX 4 AA4 THR B 22 ALA B 36 1 15 HELIX 5 AA5 VAL B 71 HIS B 85 1 15 HELIX 6 AA6 VAL B 102 LEU B 112 1 11 HELIX 7 AA7 THR C 22 ALA C 36 1 15 HELIX 8 AA8 VAL C 71 GLN C 84 1 14 HELIX 9 AA9 VAL C 102 SER C 111 1 10 SHEET 1 A 2 LEU A 7 GLU A 9 0 SHEET 2 A 2 ALA A 99 SER A 101 -1 SHEET 1 B 4 LEU A 93 LEU A 95 0 SHEET 2 B 4 LEU A 13 VAL A 20 -1 SHEET 3 B 4 ALA A 56 THR A 70 -1 SHEET 4 B 4 CYS A 41 TRP A 53 -1 SHEET 1 C 2 LEU B 7 GLU B 9 0 SHEET 2 C 2 ALA B 99 SER B 101 -1 SHEET 1 D 4 LEU B 93 LEU B 95 0 SHEET 2 D 4 LEU B 13 VAL B 20 -1 SHEET 3 D 4 ALA B 56 THR B 70 -1 SHEET 4 D 4 CYS B 41 TRP B 53 -1 SHEET 1 E 2 LEU C 7 GLU C 9 0 SHEET 2 E 2 ALA C 99 SER C 101 -1 SHEET 1 F 4 LEU C 93 LEU C 95 0 SHEET 2 F 4 LEU C 13 VAL C 20 -1 SHEET 3 F 4 ALA C 56 THR C 70 -1 SHEET 4 F 4 CYS C 41 TRP C 53 -1 CRYST1 35.149 96.371 48.977 90.00 94.19 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028450 0.000000 0.002086 0.00000 SCALE2 0.000000 0.010377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020473 0.00000