HEADER HORMONE 25-APR-18 6GE2
TITLE EXENDIN-4 BASED DUAL GLP-1/GLUCAGON RECEPTOR AGONIST
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: EXENDIN-4;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: HELODERMA SUSPECTUM;
SOURCE 4 ORGANISM_COMMON: GILA MONSTER;
SOURCE 5 ORGANISM_TAXID: 8554
KEYWDS HORMONE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR A.EVERS,M.KURZ
REVDAT 3 08-MAY-19 6GE2 1 REMARK
REVDAT 2 25-JUL-18 6GE2 1 JRNL
REVDAT 1 20-JUN-18 6GE2 0
JRNL AUTH A.EVERS,M.BOSSART,S.PFEIFFER-MAREK,R.ELVERT,H.SCHREUDER,
JRNL AUTH 2 M.KURZ,S.STENGELIN,M.LORENZ,A.HERLING,A.KONKAR,U.LUKASCZYK,
JRNL AUTH 3 A.PFENNINGER,K.LORENZ,T.HAACK,D.KADEREIT,M.WAGNER
JRNL TITL DUAL GLUCAGON-LIKE PEPTIDE 1 (GLP-1)/GLUCAGON RECEPTOR
JRNL TITL 2 AGONISTS SPECIFICALLY OPTIMIZED FOR MULTIDOSE FORMULATIONS.
JRNL REF J. MED. CHEM. V. 61 5580 2018
JRNL REFN ISSN 1520-4804
JRNL PMID 29879354
JRNL DOI 10.1021/ACS.JMEDCHEM.8B00292
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : SYBYL 2.1.1
REMARK 3 AUTHORS : TRIPOS
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6GE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-18.
REMARK 100 THE DEPOSITION ID IS D_1200009812.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 310
REMARK 210 PH : 5.0
REMARK 210 IONIC STRENGTH : 35MM SODIUM PHOSPHATE
REMARK 210 PRESSURE : 1 PA
REMARK 210 SAMPLE CONTENTS : 5 MG/ML PEPTIDE 12,
REMARK 210 TRIFLUOROETHANOL/WATER
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY;
REMARK 210 2D 1H-1H NOESY; 2D 1H-13C HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : 1; 2
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : TOPSPIN 3.2, CARA 1.8.4.2
REMARK 210 METHOD USED : MOLECULAR DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 20
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST
REMARK 210 RESTRAINT VIOLATIONS
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 3870 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 1 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES
REMARK 500 2 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES
REMARK 500 3 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES
REMARK 500 5 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES
REMARK 500 6 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES
REMARK 500 7 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES
REMARK 500 8 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES
REMARK 500 9 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES
REMARK 500 10 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 4 LEU A 21 -70.30 -57.97
REMARK 500 4 PHE A 22 -64.43 -26.25
REMARK 500 5 THR A 5 -81.12 60.62
REMARK 500 9 PHE A 22 -62.03 -28.08
REMARK 500 10 THR A 5 -61.89 -147.81
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EVT A 101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues AIB A 34
REMARK 800 through LYS A 35 bound to SER A 33
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 34266 RELATED DB: BMRB
REMARK 900 EXENDIN-4 BASED DUAL GLP-1/GLUCAGON RECEPTOR AGONIST
DBREF 6GE2 A 1 39 UNP P26349 EXE4_HELSU 48 86
SEQADV 6GE2 AIB A 2 UNP P26349 GLY 49 CONFLICT
SEQADV 6GE2 GLN A 3 UNP P26349 GLU 50 CONFLICT
SEQADV 6GE2 LYS A 14 UNP P26349 MET 61 CONFLICT
SEQADV 6GE2 ASP A 15 UNP P26349 GLU 62 CONFLICT
SEQADV 6GE2 GLN A 17 UNP P26349 GLU 64 CONFLICT
SEQADV 6GE2 ARG A 18 UNP P26349 ALA 65 CONFLICT
SEQADV 6GE2 ALA A 19 UNP P26349 VAL 66 CONFLICT
SEQADV 6GE2 LYS A 20 UNP P26349 ARG 67 CONFLICT
SEQADV 6GE2 AIB A 27 UNP P26349 LYS 74 CONFLICT
SEQADV 6GE2 ALA A 28 UNP P26349 ASN 75 CONFLICT
SEQADV 6GE2 PRO A 32 UNP P26349 SER 79 CONFLICT
SEQADV 6GE2 AIB A 34 UNP P26349 GLY 81 CONFLICT
SEQADV 6GE2 LYS A 35 UNP P26349 ALA 82 CONFLICT
SEQADV 6GE2 LYS A 39 UNP P26349 SER 86 CONFLICT
SEQADV 6GE2 NH2 A 40 UNP P26349 AMIDATION
SEQRES 1 A 40 HIS AIB GLN GLY THR PHE THR SER ASP LEU SER LYS GLN
SEQRES 2 A 40 LYS ASP GLU GLN ARG ALA LYS LEU PHE ILE GLU TRP LEU
SEQRES 3 A 40 AIB ALA GLY GLY PRO PRO SER AIB LYS PRO PRO PRO LYS
SEQRES 4 A 40 NH2
HET AIB A 2 13
HET AIB A 27 13
HET AIB A 34 13
HET NH2 A 40 3
HET EVT A 101 78
HETNAM AIB ALPHA-AMINOISOBUTYRIC ACID
HETNAM NH2 AMINO GROUP
HETNAM EVT (2~{S})-2-[[(4~{S})-4-(HEXADECANOYLAMINO)-5-OXIDANYL-5-
HETNAM 2 EVT OXIDANYLIDENE-PENTANOYL]AMINO]PENTANEDIOIC ACID
FORMUL 1 AIB 3(C4 H9 N O2)
FORMUL 1 NH2 H2 N
FORMUL 2 EVT C26 H46 N2 O8
HELIX 1 AA1 GLY A 4 GLY A 30 1 27
HELIX 2 AA2 PRO A 31 AIB A 34 5 4
LINK C HIS A 1 N AIB A 2 1555 1555 1.35
LINK C AIB A 2 N GLN A 3 1555 1555 1.35
LINK NZ LYS A 14 C33 EVT A 101 1555 1555 1.35
LINK C LEU A 26 N AIB A 27 1555 1555 1.36
LINK C AIB A 27 N ALA A 28 1555 1555 1.35
LINK C SER A 33 N AIB A 34 1555 1555 1.35
LINK C AIB A 34 N LYS A 35 1555 1555 1.36
LINK C LYS A 39 N NH2 A 40 1555 1555 1.35
SITE 1 AC1 4 LEU A 10 SER A 11 LYS A 14 ARG A 18
SITE 1 AC2 5 TRP A 25 PRO A 31 PRO A 32 SER A 33
SITE 2 AC2 5 PRO A 36
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1