HEADER PHOTOSYNTHESIS 01-MAY-18 6GFQ TITLE CYANOBACTERIAL GAPDH WITH NAD AND CP12 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CP12 POLYPEPTIDE; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: CP12 PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: TLL1466; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1452720; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 11 ORGANISM_TAXID: 197221; SOURCE 12 STRAIN: BP-1; SOURCE 13 GENE: CP12; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 1452720; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS CALVIN CYCLE, REGULATION, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR C.R.MCFARLANE,J.W.MURRAY REVDAT 3 17-JAN-24 6GFQ 1 LINK REVDAT 2 20-NOV-19 6GFQ 1 JRNL REVDAT 1 08-MAY-19 6GFQ 0 JRNL AUTH C.R.MCFARLANE,N.R.SHAH,B.V.KABASAKAL,B.ECHEVERRIA, JRNL AUTH 2 C.A.R.COTTON,D.BUBECK,J.W.MURRAY JRNL TITL STRUCTURAL BASIS OF LIGHT-INDUCED REDOX REGULATION IN THE JRNL TITL 2 CALVIN-BENSON CYCLE IN CYANOBACTERIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 20984 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31570616 JRNL DOI 10.1073/PNAS.1906722116 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 147907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 7422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7865 - 4.3485 1.00 5131 276 0.1549 0.1710 REMARK 3 2 4.3485 - 3.4520 1.00 4924 257 0.1394 0.1695 REMARK 3 3 3.4520 - 3.0158 1.00 4868 255 0.1575 0.1601 REMARK 3 4 3.0158 - 2.7401 1.00 4817 265 0.1631 0.1832 REMARK 3 5 2.7401 - 2.5438 1.00 4826 252 0.1518 0.1891 REMARK 3 6 2.5438 - 2.3938 1.00 4822 233 0.1441 0.1719 REMARK 3 7 2.3938 - 2.2739 1.00 4825 234 0.1405 0.1490 REMARK 3 8 2.2739 - 2.1749 1.00 4753 258 0.1253 0.1530 REMARK 3 9 2.1749 - 2.0912 1.00 4799 262 0.1306 0.1627 REMARK 3 10 2.0912 - 2.0191 1.00 4733 264 0.1342 0.1520 REMARK 3 11 2.0191 - 1.9559 1.00 4747 253 0.1292 0.1503 REMARK 3 12 1.9559 - 1.9000 1.00 4789 237 0.1225 0.1712 REMARK 3 13 1.9000 - 1.8500 1.00 4756 264 0.1210 0.1721 REMARK 3 14 1.8500 - 1.8049 1.00 4753 228 0.1201 0.1502 REMARK 3 15 1.8049 - 1.7638 1.00 4743 242 0.1246 0.1648 REMARK 3 16 1.7638 - 1.7263 1.00 4728 273 0.1318 0.2009 REMARK 3 17 1.7263 - 1.6918 1.00 4714 254 0.1364 0.1844 REMARK 3 18 1.6918 - 1.6598 1.00 4730 270 0.1368 0.1758 REMARK 3 19 1.6598 - 1.6302 1.00 4785 214 0.1306 0.1675 REMARK 3 20 1.6302 - 1.6026 1.00 4738 254 0.1161 0.1483 REMARK 3 21 1.6026 - 1.5767 1.00 4722 254 0.1261 0.1797 REMARK 3 22 1.5767 - 1.5524 1.00 4712 253 0.1372 0.1667 REMARK 3 23 1.5524 - 1.5296 0.99 4670 250 0.1443 0.2217 REMARK 3 24 1.5296 - 1.5081 0.98 4626 275 0.1608 0.2091 REMARK 3 25 1.5081 - 1.4877 0.97 4571 233 0.1742 0.1993 REMARK 3 26 1.4877 - 1.4684 0.95 4481 230 0.1886 0.2320 REMARK 3 27 1.4684 - 1.4500 0.93 4428 228 0.2071 0.2540 REMARK 3 28 1.4500 - 1.4325 0.90 4228 243 0.2205 0.2660 REMARK 3 29 1.4325 - 1.4159 0.88 4133 212 0.2395 0.2775 REMARK 3 30 1.4159 - 1.4000 0.83 3933 199 0.2653 0.3097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5652 REMARK 3 ANGLE : 0.931 7725 REMARK 3 CHIRALITY : 0.079 884 REMARK 3 PLANARITY : 0.006 995 REMARK 3 DIHEDRAL : 11.652 3246 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 147904 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 41.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.05763 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZDF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% TACSIMATE, PH 7, 8 % PEG3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.11900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.60850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.60850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.17850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.60850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.60850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.05950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.60850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.60850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.17850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.60850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.60850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.05950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.11900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.11900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1108 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1291 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1106 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1259 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY B -1 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASN C 3 REMARK 465 LEU C 4 REMARK 465 GLU C 5 REMARK 465 LYS C 6 REMARK 465 GLN C 7 REMARK 465 ILE C 8 REMARK 465 GLU C 9 REMARK 465 GLN C 10 REMARK 465 ALA C 11 REMARK 465 ARG C 12 REMARK 465 GLU C 13 REMARK 465 GLU C 14 REMARK 465 ALA C 15 REMARK 465 HIS C 16 REMARK 465 LYS C 17 REMARK 465 ILE C 18 REMARK 465 CYS C 19 REMARK 465 ASP C 20 REMARK 465 THR C 21 REMARK 465 GLU C 22 REMARK 465 GLY C 23 REMARK 465 ALA C 24 REMARK 465 THR C 25 REMARK 465 SER C 26 REMARK 465 GLY C 27 REMARK 465 GLN C 28 REMARK 465 CYS C 29 REMARK 465 ALA C 30 REMARK 465 ALA C 31 REMARK 465 ALA C 32 REMARK 465 TRP C 33 REMARK 465 ASP C 34 REMARK 465 ALA C 35 REMARK 465 LEU C 36 REMARK 465 GLU C 37 REMARK 465 GLU C 38 REMARK 465 LEU C 39 REMARK 465 GLN C 40 REMARK 465 ALA C 41 REMARK 465 GLU C 42 REMARK 465 ALA C 43 REMARK 465 ALA C 44 REMARK 465 HIS C 45 REMARK 465 GLN C 46 REMARK 465 ARG C 47 REMARK 465 ALA C 48 REMARK 465 GLU C 49 REMARK 465 GLN C 50 REMARK 465 GLN C 51 REMARK 465 ASP C 52 REMARK 465 HIS C 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 186 NH1 ARG A 199 2.09 REMARK 500 O LEU A 300 O HOH A 1101 2.16 REMARK 500 NH1 ARG A 41 OD1 ASP A 65 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 9 57.54 -97.80 REMARK 500 PRO A 87 44.09 -85.29 REMARK 500 THR A 123 49.46 -85.38 REMARK 500 ASN A 138 14.05 -142.69 REMARK 500 ALA A 152 -162.99 62.59 REMARK 500 ALA A 202 110.86 -39.19 REMARK 500 VAL A 241 130.52 89.97 REMARK 500 THR A 269 -94.40 -130.48 REMARK 500 PHE B 9 56.73 -98.52 REMARK 500 ASP B 64 -160.82 -129.04 REMARK 500 PRO B 87 46.15 -84.05 REMARK 500 PHE B 103 62.80 -106.77 REMARK 500 THR B 123 49.10 -85.28 REMARK 500 ASN B 138 15.09 -142.12 REMARK 500 ALA B 152 -165.69 60.56 REMARK 500 SER B 193 126.67 -35.19 REMARK 500 VAL B 241 131.96 90.61 REMARK 500 THR B 269 -97.27 -131.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1323 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH B1324 DISTANCE = 8.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 305 O REMARK 620 2 ASN A 307 OD1 82.6 REMARK 620 3 HOH A1197 O 81.8 99.2 REMARK 620 4 HOH A1220 O 98.8 174.8 86.0 REMARK 620 5 HOH A1290 O 164.0 81.8 97.1 97.0 REMARK 620 6 HOH A1296 O 97.0 88.4 172.0 86.4 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 305 O REMARK 620 2 ASN B 307 OD1 72.0 REMARK 620 3 HOH B1255 O 79.9 94.7 REMARK 620 4 HOH B1285 O 87.4 81.1 167.3 REMARK 620 5 HOH B1291 O 157.5 86.5 95.6 96.1 REMARK 620 6 HOH B1303 O 107.8 177.1 88.1 96.0 94.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 DBREF 6GFQ A 1 337 UNP Q8DIW5 Q8DIW5_THEEB 1 337 DBREF 6GFQ B 1 337 UNP Q8DIW5 Q8DIW5_THEEB 1 337 DBREF 6GFQ C 1 75 UNP Q8DHX3 Q8DHX3_THEEB 1 75 SEQADV 6GFQ GLY A -1 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GFQ SER A 0 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GFQ GLY B -1 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GFQ SER B 0 UNP Q8DIW5 EXPRESSION TAG SEQADV 6GFQ GLY C -1 UNP Q8DHX3 EXPRESSION TAG SEQADV 6GFQ SER C 0 UNP Q8DHX3 EXPRESSION TAG SEQRES 1 A 339 GLY SER MET VAL ARG VAL ALA ILE ASN GLY PHE GLY ARG SEQRES 2 A 339 ILE GLY ARG ASN PHE MET ARG CYS TRP LEU GLN ARG LYS SEQRES 3 A 339 ALA ASN SER LYS LEU GLU ILE VAL GLY ILE ASN ASP THR SEQRES 4 A 339 SER ASP PRO ARG THR ASN ALA HIS LEU LEU LYS TYR ASP SEQRES 5 A 339 SER MET LEU GLY ILE PHE GLN ASP ALA GLU ILE THR ALA SEQRES 6 A 339 ASP ASP ASP CYS ILE TYR ALA GLY GLY HIS ALA VAL LYS SEQRES 7 A 339 CYS VAL SER ASP ARG ASN PRO GLU ASN LEU PRO TRP SER SEQRES 8 A 339 ALA TRP GLY ILE ASP LEU VAL ILE GLU ALA THR GLY VAL SEQRES 9 A 339 PHE THR SER ARG GLU GLY ALA SER LYS HIS LEU SER ALA SEQRES 10 A 339 GLY ALA LYS LYS VAL LEU ILE THR ALA PRO GLY LYS GLY SEQRES 11 A 339 ASN ILE PRO THR TYR VAL VAL GLY VAL ASN HIS HIS THR SEQRES 12 A 339 TYR ASP PRO SER GLU ASP ILE VAL SER ASN ALA SER CYS SEQRES 13 A 339 THR THR ASN CYS LEU ALA PRO ILE VAL LYS VAL LEU HIS SEQRES 14 A 339 GLU ALA PHE GLY ILE GLN GLN GLY MET MET THR THR THR SEQRES 15 A 339 HIS SER TYR THR GLY ASP GLN ARG LEU LEU ASP ALA SER SEQRES 16 A 339 HIS ARG ASP LEU ARG ARG ALA ARG ALA ALA ALA MET ASN SEQRES 17 A 339 ILE VAL PRO THR SER THR GLY ALA ALA LYS ALA VAL GLY SEQRES 18 A 339 LEU VAL ILE PRO GLU LEU GLN GLY LYS LEU ASN GLY ILE SEQRES 19 A 339 ALA LEU ARG VAL PRO THR PRO ASN VAL SER VAL VAL ASP SEQRES 20 A 339 PHE VAL ALA GLN VAL GLU LYS PRO THR ILE ALA GLU GLN SEQRES 21 A 339 VAL ASN GLN VAL ILE LYS GLU ALA SER GLU THR THR MET SEQRES 22 A 339 LYS GLY ILE ILE HIS TYR SER GLU LEU GLU LEU VAL SER SEQRES 23 A 339 SER ASP TYR ARG GLY HIS ASN ALA SER SER ILE LEU ASP SEQRES 24 A 339 ALA SER LEU THR MET VAL LEU GLY GLY ASN LEU VAL LYS SEQRES 25 A 339 VAL VAL ALA TRP TYR ASP ASN GLU TRP GLY TYR SER GLN SEQRES 26 A 339 ARG VAL LEU ASP LEU ALA GLU HIS MET ALA ALA HIS TRP SEQRES 27 A 339 ALA SEQRES 1 B 339 GLY SER MET VAL ARG VAL ALA ILE ASN GLY PHE GLY ARG SEQRES 2 B 339 ILE GLY ARG ASN PHE MET ARG CYS TRP LEU GLN ARG LYS SEQRES 3 B 339 ALA ASN SER LYS LEU GLU ILE VAL GLY ILE ASN ASP THR SEQRES 4 B 339 SER ASP PRO ARG THR ASN ALA HIS LEU LEU LYS TYR ASP SEQRES 5 B 339 SER MET LEU GLY ILE PHE GLN ASP ALA GLU ILE THR ALA SEQRES 6 B 339 ASP ASP ASP CYS ILE TYR ALA GLY GLY HIS ALA VAL LYS SEQRES 7 B 339 CYS VAL SER ASP ARG ASN PRO GLU ASN LEU PRO TRP SER SEQRES 8 B 339 ALA TRP GLY ILE ASP LEU VAL ILE GLU ALA THR GLY VAL SEQRES 9 B 339 PHE THR SER ARG GLU GLY ALA SER LYS HIS LEU SER ALA SEQRES 10 B 339 GLY ALA LYS LYS VAL LEU ILE THR ALA PRO GLY LYS GLY SEQRES 11 B 339 ASN ILE PRO THR TYR VAL VAL GLY VAL ASN HIS HIS THR SEQRES 12 B 339 TYR ASP PRO SER GLU ASP ILE VAL SER ASN ALA SER CYS SEQRES 13 B 339 THR THR ASN CYS LEU ALA PRO ILE VAL LYS VAL LEU HIS SEQRES 14 B 339 GLU ALA PHE GLY ILE GLN GLN GLY MET MET THR THR THR SEQRES 15 B 339 HIS SER TYR THR GLY ASP GLN ARG LEU LEU ASP ALA SER SEQRES 16 B 339 HIS ARG ASP LEU ARG ARG ALA ARG ALA ALA ALA MET ASN SEQRES 17 B 339 ILE VAL PRO THR SER THR GLY ALA ALA LYS ALA VAL GLY SEQRES 18 B 339 LEU VAL ILE PRO GLU LEU GLN GLY LYS LEU ASN GLY ILE SEQRES 19 B 339 ALA LEU ARG VAL PRO THR PRO ASN VAL SER VAL VAL ASP SEQRES 20 B 339 PHE VAL ALA GLN VAL GLU LYS PRO THR ILE ALA GLU GLN SEQRES 21 B 339 VAL ASN GLN VAL ILE LYS GLU ALA SER GLU THR THR MET SEQRES 22 B 339 LYS GLY ILE ILE HIS TYR SER GLU LEU GLU LEU VAL SER SEQRES 23 B 339 SER ASP TYR ARG GLY HIS ASN ALA SER SER ILE LEU ASP SEQRES 24 B 339 ALA SER LEU THR MET VAL LEU GLY GLY ASN LEU VAL LYS SEQRES 25 B 339 VAL VAL ALA TRP TYR ASP ASN GLU TRP GLY TYR SER GLN SEQRES 26 B 339 ARG VAL LEU ASP LEU ALA GLU HIS MET ALA ALA HIS TRP SEQRES 27 B 339 ALA SEQRES 1 C 77 GLY SER MET SER ASN LEU GLU LYS GLN ILE GLU GLN ALA SEQRES 2 C 77 ARG GLU GLU ALA HIS LYS ILE CYS ASP THR GLU GLY ALA SEQRES 3 C 77 THR SER GLY GLN CYS ALA ALA ALA TRP ASP ALA LEU GLU SEQRES 4 C 77 GLU LEU GLN ALA GLU ALA ALA HIS GLN ARG ALA GLU GLN SEQRES 5 C 77 GLN ASP HIS LYS THR SER PHE GLN GLN TYR CYS ASP ASP SEQRES 6 C 77 ASN PRO ASP ALA ALA GLU CYS ARG ILE TYR ASP ASP HET NAD A1001 44 HET MG A1002 1 HET NAD B1001 44 HET MG B1002 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM MG MAGNESIUM ION FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 MG 2(MG 2+) FORMUL 8 HOH *478(H2 O) HELIX 1 AA1 GLY A 10 ARG A 23 1 14 HELIX 2 AA2 LYS A 24 SER A 27 5 4 HELIX 3 AA3 ASP A 39 LYS A 48 1 10 HELIX 4 AA4 ASN A 82 LEU A 86 5 5 HELIX 5 AA5 SER A 105 ALA A 115 1 11 HELIX 6 AA6 ASN A 138 TYR A 142 5 5 HELIX 7 AA7 SER A 153 GLY A 171 1 19 HELIX 8 AA8 ALA A 202 ASN A 206 5 5 HELIX 9 AA9 GLY A 213 ILE A 222 1 10 HELIX 10 AB1 PRO A 223 GLN A 226 5 4 HELIX 11 AB2 ILE A 255 THR A 269 1 15 HELIX 12 AB3 VAL A 283 ARG A 288 5 6 HELIX 13 AB4 SER A 299 THR A 301 5 3 HELIX 14 AB5 GLU A 318 HIS A 335 1 18 HELIX 15 AB6 GLY B 10 ARG B 23 1 14 HELIX 16 AB7 LYS B 24 SER B 27 5 4 HELIX 17 AB8 ASP B 39 LYS B 48 1 10 HELIX 18 AB9 ASN B 82 LEU B 86 5 5 HELIX 19 AC1 SER B 105 ALA B 115 1 11 HELIX 20 AC2 ASN B 138 TYR B 142 5 5 HELIX 21 AC3 SER B 153 GLY B 171 1 19 HELIX 22 AC4 ALA B 202 ASN B 206 5 5 HELIX 23 AC5 ALA B 217 ILE B 222 1 6 HELIX 24 AC6 PRO B 223 GLN B 226 5 4 HELIX 25 AC7 ILE B 255 THR B 269 1 15 HELIX 26 AC8 VAL B 283 ARG B 288 5 6 HELIX 27 AC9 SER B 299 THR B 301 5 3 HELIX 28 AD1 GLU B 318 HIS B 335 1 18 HELIX 29 AD2 THR C 55 ASN C 64 1 10 SHEET 1 AA1 8 ILE A 61 ALA A 63 0 SHEET 2 AA1 8 CYS A 67 ALA A 70 -1 O TYR A 69 N THR A 62 SHEET 3 AA1 8 HIS A 73 VAL A 78 -1 O VAL A 75 N ILE A 68 SHEET 4 AA1 8 LEU A 29 ASN A 35 1 N ILE A 34 O LYS A 76 SHEET 5 AA1 8 VAL A 2 ASN A 7 1 N VAL A 4 O GLU A 30 SHEET 6 AA1 8 LEU A 95 GLU A 98 1 O ILE A 97 N ASN A 7 SHEET 7 AA1 8 LYS A 119 ILE A 122 1 O LEU A 121 N VAL A 96 SHEET 8 AA1 8 ILE A 148 SER A 150 1 O VAL A 149 N ILE A 122 SHEET 1 AA2 2 TYR A 49 ASP A 50 0 SHEET 2 AA2 2 GLY A 54 ILE A 55 -1 O GLY A 54 N ASP A 50 SHEET 1 AA3 7 VAL A 208 SER A 211 0 SHEET 2 AA3 7 LEU A 229 VAL A 236 -1 O ARG A 235 N VAL A 208 SHEET 3 AA3 7 ILE A 172 SER A 182 1 N THR A 179 O LEU A 234 SHEET 4 AA3 7 SER A 242 VAL A 250 -1 O GLN A 249 N GLN A 173 SHEET 5 AA3 7 LEU A 308 TYR A 315 -1 O VAL A 309 N ALA A 248 SHEET 6 AA3 7 SER A 294 ASP A 297 -1 N ASP A 297 O VAL A 312 SHEET 7 AA3 7 ILE A 275 SER A 278 1 N HIS A 276 O SER A 294 SHEET 1 AA4 6 VAL A 208 SER A 211 0 SHEET 2 AA4 6 LEU A 229 VAL A 236 -1 O ARG A 235 N VAL A 208 SHEET 3 AA4 6 ILE A 172 SER A 182 1 N THR A 179 O LEU A 234 SHEET 4 AA4 6 SER A 242 VAL A 250 -1 O GLN A 249 N GLN A 173 SHEET 5 AA4 6 LEU A 308 TYR A 315 -1 O VAL A 309 N ALA A 248 SHEET 6 AA4 6 MET A 302 LEU A 304 -1 N MET A 302 O LYS A 310 SHEET 1 AA5 8 ILE B 61 ALA B 63 0 SHEET 2 AA5 8 CYS B 67 ALA B 70 -1 O TYR B 69 N THR B 62 SHEET 3 AA5 8 HIS B 73 VAL B 78 -1 O VAL B 75 N ILE B 68 SHEET 4 AA5 8 LEU B 29 ASN B 35 1 N ILE B 34 O LYS B 76 SHEET 5 AA5 8 VAL B 2 ASN B 7 1 N VAL B 4 O GLU B 30 SHEET 6 AA5 8 LEU B 95 GLU B 98 1 O ILE B 97 N ASN B 7 SHEET 7 AA5 8 LYS B 119 ILE B 122 1 O LEU B 121 N VAL B 96 SHEET 8 AA5 8 ILE B 148 SER B 150 1 O VAL B 149 N ILE B 122 SHEET 1 AA6 2 TYR B 49 ASP B 50 0 SHEET 2 AA6 2 GLY B 54 ILE B 55 -1 O GLY B 54 N ASP B 50 SHEET 1 AA7 7 VAL B 208 SER B 211 0 SHEET 2 AA7 7 LEU B 229 VAL B 236 -1 O ARG B 235 N VAL B 208 SHEET 3 AA7 7 ILE B 172 SER B 182 1 N THR B 179 O LEU B 234 SHEET 4 AA7 7 SER B 242 VAL B 250 -1 O GLN B 249 N GLN B 173 SHEET 5 AA7 7 LEU B 308 TYR B 315 -1 O ALA B 313 N VAL B 244 SHEET 6 AA7 7 SER B 294 ASP B 297 -1 N ASP B 297 O VAL B 312 SHEET 7 AA7 7 ILE B 275 SER B 278 1 N HIS B 276 O SER B 294 SHEET 1 AA8 6 VAL B 208 SER B 211 0 SHEET 2 AA8 6 LEU B 229 VAL B 236 -1 O ARG B 235 N VAL B 208 SHEET 3 AA8 6 ILE B 172 SER B 182 1 N THR B 179 O LEU B 234 SHEET 4 AA8 6 SER B 242 VAL B 250 -1 O GLN B 249 N GLN B 173 SHEET 5 AA8 6 LEU B 308 TYR B 315 -1 O ALA B 313 N VAL B 244 SHEET 6 AA8 6 MET B 302 LEU B 304 -1 N MET B 302 O LYS B 310 SSBOND 1 CYS C 61 CYS C 70 1555 1555 2.05 LINK O GLY A 305 MG MG A1002 1555 1555 2.45 LINK OD1 ASN A 307 MG MG A1002 1555 1555 2.47 LINK MG MG A1002 O HOH A1197 1555 8555 2.37 LINK MG MG A1002 O HOH A1220 1555 8555 2.57 LINK MG MG A1002 O HOH A1290 1555 8555 2.41 LINK MG MG A1002 O HOH A1296 1555 1555 2.26 LINK O GLY B 305 MG MG B1002 1555 1555 2.57 LINK OD1 ASN B 307 MG MG B1002 1555 1555 2.77 LINK MG MG B1002 O HOH B1255 1555 8555 2.44 LINK MG MG B1002 O HOH B1285 1555 1555 2.24 LINK MG MG B1002 O HOH B1291 1555 1555 2.41 LINK MG MG B1002 O HOH B1303 1555 1555 2.45 SITE 1 AC1 34 GLY A 8 PHE A 9 GLY A 10 ARG A 11 SITE 2 AC1 34 ILE A 12 ASN A 35 ASP A 36 THR A 37 SITE 3 AC1 34 ARG A 81 ALA A 99 THR A 100 GLY A 101 SITE 4 AC1 34 PHE A 103 THR A 123 ALA A 124 CYS A 154 SITE 5 AC1 34 ASN A 317 TYR A 321 HOH A1119 HOH A1133 SITE 6 AC1 34 HOH A1153 HOH A1160 HOH A1163 HOH A1168 SITE 7 AC1 34 HOH A1185 HOH A1191 HOH A1209 HOH A1224 SITE 8 AC1 34 HOH A1228 HOH A1258 HOH A1260 HOH A1273 SITE 9 AC1 34 HOH A1282 HOH C 109 SITE 1 AC2 6 GLY A 305 ASN A 307 HOH A1197 HOH A1220 SITE 2 AC2 6 HOH A1290 HOH A1296 SITE 1 AC3 34 HOH A1186 HOH A1274 GLY B 8 PHE B 9 SITE 2 AC3 34 GLY B 10 ARG B 11 ILE B 12 ASN B 35 SITE 3 AC3 34 ASP B 36 THR B 37 ARG B 81 ALA B 99 SITE 4 AC3 34 THR B 100 GLY B 101 PHE B 103 THR B 123 SITE 5 AC3 34 ALA B 124 CYS B 154 ASN B 317 TYR B 321 SITE 6 AC3 34 HOH B1111 HOH B1130 HOH B1133 HOH B1135 SITE 7 AC3 34 HOH B1162 HOH B1177 HOH B1187 HOH B1210 SITE 8 AC3 34 HOH B1240 HOH B1272 ASP C 66 TYR C 73 SITE 9 AC3 34 HOH C 105 HOH C 110 SITE 1 AC4 6 GLY B 305 ASN B 307 HOH B1255 HOH B1285 SITE 2 AC4 6 HOH B1291 HOH B1303 CRYST1 141.217 141.217 76.238 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007081 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007081 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013117 0.00000