HEADER IMMUNE SYSTEM 03-MAY-18 6GGM TITLE HLA-E*01:03 IN COMPLEX WITH THE MTB44 PEPTIDE VARIANT: MTB44*P2-PHE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MTB44*P2-PHE PEPTIDE VARIANT (ARG-PHE-PRO-ALA-LYS-ALA-PRO- COMPND 11 LEU-LEU); COMPND 12 CHAIN: P, Q; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: MYCOBACTERIACEAE; SOURCE 20 ORGANISM_TAXID: 1762 KEYWDS COMPLEX, HISTOCOMPATIBILITY ANTIGEN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.C.WALTERS,G.M.GILLESPIE,A.J.MCMICHAEL,D.ROZBESKY,E.Y.JONES,K.HARLOS REVDAT 3 17-JAN-24 6GGM 1 LINK REVDAT 2 22-AUG-18 6GGM 1 JRNL REVDAT 1 08-AUG-18 6GGM 0 JRNL AUTH L.C.WALTERS,K.HARLOS,S.BRACKENRIDGE,D.ROZBESKY,J.R.BARRETT, JRNL AUTH 2 V.JAIN,T.S.WALTER,C.A.O'CALLAGHAN,P.BORROW,M.TOEBES, JRNL AUTH 3 S.G.HANSEN,J.SACHA,S.ABDULHAQQ,J.M.GREENE,K.FRUH,E.MARSHALL, JRNL AUTH 4 L.J.PICKER,E.Y.JONES,A.J.MCMICHAEL,G.M.GILLESPIE JRNL TITL PATHOGEN-DERIVED HLA-E BOUND EPITOPES REVEAL BROAD PRIMARY JRNL TITL 2 ANCHOR POCKET TOLERABILITY AND CONFORMATIONALLY MALLEABLE JRNL TITL 3 PEPTIDE BINDING. JRNL REF NAT COMMUN V. 9 3137 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30087334 JRNL DOI 10.1038/S41467-018-05459-Z REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 24993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.1936 - 5.6852 0.99 2743 150 0.1755 0.1844 REMARK 3 2 5.6852 - 4.5132 1.00 2767 135 0.1380 0.1435 REMARK 3 3 4.5132 - 3.9429 1.00 2779 151 0.1396 0.1830 REMARK 3 4 3.9429 - 3.5825 1.00 2753 123 0.1565 0.1924 REMARK 3 5 3.5825 - 3.3258 1.00 2764 134 0.1858 0.2356 REMARK 3 6 3.3258 - 3.1297 1.00 2758 165 0.2043 0.2595 REMARK 3 7 3.1297 - 2.9730 1.00 2749 176 0.2266 0.2695 REMARK 3 8 2.9730 - 2.8436 0.93 2530 156 0.2381 0.3112 REMARK 3 9 2.8436 - 2.7341 0.67 1838 122 0.2653 0.3031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6460 REMARK 3 ANGLE : 0.692 8781 REMARK 3 CHIRALITY : 0.045 894 REMARK 3 PLANARITY : 0.005 1149 REMARK 3 DIHEDRAL : 15.987 3811 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25095 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 53.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.23000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 7.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GH1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 0.1 M MES, REMARK 280 1MM ZNSO4, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 222 REMARK 465 GLY C 223 REMARK 465 HIS C 224 REMARK 465 THR C 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 335 O HOH D 342 1.82 REMARK 500 O GLU A 177 O HOH A 401 1.83 REMARK 500 O HOH C 413 O HOH C 464 1.84 REMARK 500 O HOH C 419 O HOH C 448 1.84 REMARK 500 OD2 ASP A 220 O HOH A 402 1.97 REMARK 500 O3 SO4 A 305 O HOH A 403 1.97 REMARK 500 O1 SO4 A 305 O HOH A 403 1.99 REMARK 500 O HOH A 480 O HOH A 483 2.02 REMARK 500 OD1 ASP A 149 O HOH A 404 2.02 REMARK 500 O ASP B 54 O HOH B 301 2.09 REMARK 500 OD2 ASP A 238 O HOH A 405 2.09 REMARK 500 NH2 ARG A 14 O HOH A 406 2.10 REMARK 500 OD2 ASP C 30 O HOH C 401 2.10 REMARK 500 O HOH B 340 O HOH B 342 2.11 REMARK 500 O HOH Q 102 O HOH Q 103 2.11 REMARK 500 O GLU C 55 O HOH C 402 2.11 REMARK 500 O HOH C 422 O HOH C 479 2.12 REMARK 500 OE2 GLU C 128 O HOH C 403 2.13 REMARK 500 O HOH C 474 O HOH D 321 2.13 REMARK 500 O4 SO4 B 201 O HOH B 302 2.13 REMARK 500 O HOH D 333 O HOH D 352 2.14 REMARK 500 O HOH D 313 O HOH D 354 2.16 REMARK 500 O HOH D 347 O HOH D 349 2.16 REMARK 500 O GLY C 91 O HOH C 404 2.17 REMARK 500 NE ARG A 256 O HOH A 407 2.17 REMARK 500 OE1 GLN C 32 O HOH C 405 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ZN ZN A 303 ZN ZN C 301 1454 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -120.36 55.18 REMARK 500 TYR A 123 -69.93 -124.58 REMARK 500 TRP B 61 -4.68 80.14 REMARK 500 ASP C 29 -119.45 54.92 REMARK 500 TYR C 123 -69.51 -125.28 REMARK 500 ASP C 137 151.72 83.18 REMARK 500 ASP C 220 -55.21 66.19 REMARK 500 GLN D 90 146.63 -172.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE2 REMARK 620 2 HIS A 155 ND1 122.6 REMARK 620 3 LYS P 5 NZ 126.6 107.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 181 NE2 REMARK 620 2 GLU A 183 OE2 112.7 REMARK 620 3 HIS C 181 NE2 101.5 100.5 REMARK 620 4 GLU C 183 OE1 85.7 136.1 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 196 OD2 REMARK 620 2 ASP C 196 OD1 70.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 196 OD1 REMARK 620 2 ASP C 196 OD1 67.8 REMARK 620 3 ASP C 196 OD2 68.9 1.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 203 DBREF 6GGM A 1 274 UNP E2G051 E2G051_HUMAN 22 295 DBREF 6GGM B 2 100 UNP P61769 B2MG_HUMAN 21 119 DBREF 6GGM C 1 274 UNP E2G051 E2G051_HUMAN 22 295 DBREF 6GGM D 2 100 UNP P61769 B2MG_HUMAN 21 119 DBREF 6GGM P 1 9 PDB 6GGM 6GGM 1 9 DBREF 6GGM Q 1 9 PDB 6GGM 6GGM 1 9 SEQADV 6GGM MET B 1 UNP P61769 INITIATING METHIONINE SEQADV 6GGM MET D 1 UNP P61769 INITIATING METHIONINE SEQRES 1 A 274 GLY SER HIS SER LEU LYS TYR PHE HIS THR SER VAL SER SEQRES 2 A 274 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE SER VAL GLY SEQRES 3 A 274 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP ASN ASP SEQRES 4 A 274 ALA ALA SER PRO ARG MET VAL PRO ARG ALA PRO TRP MET SEQRES 5 A 274 GLU GLN GLU GLY SER GLU TYR TRP ASP ARG GLU THR ARG SEQRES 6 A 274 SER ALA ARG ASP THR ALA GLN ILE PHE ARG VAL ASN LEU SEQRES 7 A 274 ARG THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 274 SER HIS THR LEU GLN TRP MET HIS GLY CYS GLU LEU GLY SEQRES 9 A 274 PRO ASP GLY ARG PHE LEU ARG GLY TYR GLU GLN PHE ALA SEQRES 10 A 274 TYR ASP GLY LYS ASP TYR LEU THR LEU ASN GLU ASP LEU SEQRES 11 A 274 ARG SER TRP THR ALA VAL ASP THR ALA ALA GLN ILE SER SEQRES 12 A 274 GLU GLN LYS SER ASN ASP ALA SER GLU ALA GLU HIS GLN SEQRES 13 A 274 ARG ALA TYR LEU GLU ASP THR CYS VAL GLU TRP LEU HIS SEQRES 14 A 274 LYS TYR LEU GLU LYS GLY LYS GLU THR LEU LEU HIS LEU SEQRES 15 A 274 GLU PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 A 274 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 274 TYR PRO ALA GLU ILE THR LEU THR TRP GLN GLN ASP GLY SEQRES 18 A 274 GLU GLY HIS THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 274 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 274 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 274 VAL GLN HIS GLU GLY LEU PRO GLU PRO VAL THR LEU ARG SEQRES 22 A 274 TRP SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 274 GLY SER HIS SER LEU LYS TYR PHE HIS THR SER VAL SER SEQRES 2 C 274 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE SER VAL GLY SEQRES 3 C 274 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP ASN ASP SEQRES 4 C 274 ALA ALA SER PRO ARG MET VAL PRO ARG ALA PRO TRP MET SEQRES 5 C 274 GLU GLN GLU GLY SER GLU TYR TRP ASP ARG GLU THR ARG SEQRES 6 C 274 SER ALA ARG ASP THR ALA GLN ILE PHE ARG VAL ASN LEU SEQRES 7 C 274 ARG THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 C 274 SER HIS THR LEU GLN TRP MET HIS GLY CYS GLU LEU GLY SEQRES 9 C 274 PRO ASP GLY ARG PHE LEU ARG GLY TYR GLU GLN PHE ALA SEQRES 10 C 274 TYR ASP GLY LYS ASP TYR LEU THR LEU ASN GLU ASP LEU SEQRES 11 C 274 ARG SER TRP THR ALA VAL ASP THR ALA ALA GLN ILE SER SEQRES 12 C 274 GLU GLN LYS SER ASN ASP ALA SER GLU ALA GLU HIS GLN SEQRES 13 C 274 ARG ALA TYR LEU GLU ASP THR CYS VAL GLU TRP LEU HIS SEQRES 14 C 274 LYS TYR LEU GLU LYS GLY LYS GLU THR LEU LEU HIS LEU SEQRES 15 C 274 GLU PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 C 274 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 C 274 TYR PRO ALA GLU ILE THR LEU THR TRP GLN GLN ASP GLY SEQRES 18 C 274 GLU GLY HIS THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 C 274 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 C 274 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 C 274 VAL GLN HIS GLU GLY LEU PRO GLU PRO VAL THR LEU ARG SEQRES 22 C 274 TRP SEQRES 1 D 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 D 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 D 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 D 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 D 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 D 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 D 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 D 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 P 9 ARG PHE PRO ALA LYS ALA PRO LEU LEU SEQRES 1 Q 9 ARG PHE PRO ALA LYS ALA PRO LEU LEU HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 B 201 5 HET ZN C 301 1 HET SO4 D 201 5 HET SO4 D 202 5 HET SO4 D 203 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 7 ZN 4(ZN 2+) FORMUL 10 SO4 6(O4 S 2-) FORMUL 17 HOH *277(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 SER A 151 ASP A 162 1 12 HELIX 5 AA5 ASP A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 LEU A 180 1 6 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 HELIX 8 AA8 ALA C 49 GLU C 53 5 5 HELIX 9 AA9 GLY C 56 TYR C 85 1 30 HELIX 10 AB1 ASP C 137 ALA C 139 5 3 HELIX 11 AB2 ALA C 140 ALA C 150 1 11 HELIX 12 AB3 SER C 151 ASP C 162 1 12 HELIX 13 AB4 ASP C 162 GLY C 175 1 14 HELIX 14 AB5 GLY C 175 LEU C 180 1 6 HELIX 15 AB6 GLU C 253 GLN C 255 5 3 SHEET 1 AA1 8 VAL A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O VAL A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N LYS A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 LEU A 103 -1 O TRP A 97 N HIS A 9 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O ARG A 111 N GLU A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O LEU A 124 N PHE A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N THR A 125 SHEET 1 AA2 4 LYS A 186 HIS A 192 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 HIS A 192 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 3 THR A 214 GLN A 219 0 SHEET 2 AA4 3 TYR A 257 GLN A 262 -1 O THR A 258 N GLN A 218 SHEET 3 AA4 3 VAL A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 7 SER B 12 0 SHEET 2 AA5 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA5 4 PHE B 63 PHE B 71 -1 O TYR B 67 N CYS B 26 SHEET 4 AA5 4 GLU B 51 HIS B 52 -1 N GLU B 51 O TYR B 68 SHEET 1 AA6 4 LYS B 7 SER B 12 0 SHEET 2 AA6 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA6 4 PHE B 63 PHE B 71 -1 O TYR B 67 N CYS B 26 SHEET 4 AA6 4 SER B 56 PHE B 57 -1 N SER B 56 O TYR B 64 SHEET 1 AA7 4 GLU B 45 ARG B 46 0 SHEET 2 AA7 4 GLU B 37 LYS B 42 -1 N LYS B 42 O GLU B 45 SHEET 3 AA7 4 TYR B 79 ASN B 84 -1 O ALA B 80 N LEU B 41 SHEET 4 AA7 4 LYS B 92 LYS B 95 -1 O LYS B 92 N VAL B 83 SHEET 1 AA8 8 VAL C 46 PRO C 47 0 SHEET 2 AA8 8 THR C 31 ASP C 37 -1 N ARG C 35 O VAL C 46 SHEET 3 AA8 8 ARG C 21 VAL C 28 -1 N SER C 24 O PHE C 36 SHEET 4 AA8 8 HIS C 3 VAL C 12 -1 N LYS C 6 O TYR C 27 SHEET 5 AA8 8 THR C 94 LEU C 103 -1 O TRP C 97 N HIS C 9 SHEET 6 AA8 8 PHE C 109 TYR C 118 -1 O ARG C 111 N GLU C 102 SHEET 7 AA8 8 LYS C 121 LEU C 126 -1 O TYR C 123 N PHE C 116 SHEET 8 AA8 8 TRP C 133 ALA C 135 -1 O THR C 134 N THR C 125 SHEET 1 AA9 4 LYS C 186 PRO C 193 0 SHEET 2 AA9 4 GLU C 198 PHE C 208 -1 O LEU C 206 N LYS C 186 SHEET 3 AA9 4 PHE C 241 PRO C 250 -1 O ALA C 245 N CYS C 203 SHEET 4 AA9 4 GLU C 229 LEU C 230 -1 N GLU C 229 O ALA C 246 SHEET 1 AB1 4 LYS C 186 PRO C 193 0 SHEET 2 AB1 4 GLU C 198 PHE C 208 -1 O LEU C 206 N LYS C 186 SHEET 3 AB1 4 PHE C 241 PRO C 250 -1 O ALA C 245 N CYS C 203 SHEET 4 AB1 4 ARG C 234 PRO C 235 -1 N ARG C 234 O GLN C 242 SHEET 1 AB2 3 THR C 214 GLN C 219 0 SHEET 2 AB2 3 TYR C 257 GLN C 262 -1 O HIS C 260 N THR C 216 SHEET 3 AB2 3 VAL C 270 LEU C 272 -1 O LEU C 272 N CYS C 259 SHEET 1 AB3 4 LYS D 7 SER D 12 0 SHEET 2 AB3 4 ASN D 22 PHE D 31 -1 O ASN D 25 N TYR D 11 SHEET 3 AB3 4 PHE D 63 PHE D 71 -1 O TYR D 67 N CYS D 26 SHEET 4 AB3 4 GLU D 51 HIS D 52 -1 N GLU D 51 O TYR D 68 SHEET 1 AB4 4 LYS D 7 SER D 12 0 SHEET 2 AB4 4 ASN D 22 PHE D 31 -1 O ASN D 25 N TYR D 11 SHEET 3 AB4 4 PHE D 63 PHE D 71 -1 O TYR D 67 N CYS D 26 SHEET 4 AB4 4 SER D 56 PHE D 57 -1 N SER D 56 O TYR D 64 SHEET 1 AB5 4 GLU D 45 ARG D 46 0 SHEET 2 AB5 4 GLU D 37 LYS D 42 -1 N LYS D 42 O GLU D 45 SHEET 3 AB5 4 TYR D 79 ASN D 84 -1 O ALA D 80 N LEU D 41 SHEET 4 AB5 4 LYS D 92 LYS D 95 -1 O LYS D 92 N VAL D 83 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 26 CYS B 81 1555 1555 2.05 SSBOND 4 CYS C 101 CYS C 164 1555 1555 2.05 SSBOND 5 CYS C 203 CYS C 259 1555 1555 2.04 SSBOND 6 CYS D 26 CYS D 81 1555 1555 2.04 LINK OE2 GLU A 152 ZN ZN A 302 1555 1555 2.25 LINK ND1 HIS A 155 ZN ZN A 302 1555 1555 2.06 LINK NE2 HIS A 181 ZN ZN A 301 1555 1555 2.22 LINK OE2 GLU A 183 ZN ZN A 301 1555 1555 1.98 LINK OD2 ASP A 196 ZN ZN A 303 1555 1555 2.47 LINK OD1 ASP A 196 ZN ZN C 301 1555 1454 2.54 LINK ZN ZN A 301 NE2 HIS C 181 1555 1555 2.07 LINK ZN ZN A 301 OE1 GLU C 183 1555 1555 1.97 LINK ZN ZN A 302 NZ LYS P 5 1555 1555 1.96 LINK ZN ZN A 303 OD1 ASP C 196 1656 1555 2.68 LINK OD1 ASP C 196 ZN ZN C 301 1555 1555 2.28 LINK OD2 ASP C 196 ZN ZN C 301 1555 1555 2.19 CISPEP 1 TYR A 209 PRO A 210 0 2.34 CISPEP 2 HIS B 32 PRO B 33 0 3.66 CISPEP 3 TYR C 209 PRO C 210 0 2.71 CISPEP 4 HIS D 32 PRO D 33 0 0.62 SITE 1 AC1 4 HIS A 181 GLU A 183 HIS C 181 GLU C 183 SITE 1 AC2 4 GLU A 152 HIS A 155 HIS C 155 LYS P 5 SITE 1 AC3 5 ASP A 196 HIS A 197 ASP C 196 HIS C 197 SITE 2 AC3 5 ZN C 301 SITE 1 AC4 6 ARG A 62 TRP A 167 HOH A 424 HOH A 427 SITE 2 AC4 6 HOH A 463 ARG P 1 SITE 1 AC5 4 ARG A 75 ARG A 79 ARG A 82 HOH A 403 SITE 1 AC6 5 LYS B 42 PHE B 71 THR B 72 TYR B 79 SITE 2 AC6 5 HOH B 302 SITE 1 AC7 5 ASP A 196 HIS A 197 ZN A 303 ASP C 196 SITE 2 AC7 5 HIS C 197 SITE 1 AC8 4 LYS D 42 PHE D 71 THR D 72 TYR D 79 SITE 1 AC9 10 HOH A 405 ARG B 13 HIS B 14 PHE B 23 SITE 2 AC9 10 HOH C 433 ARG D 13 HIS D 14 PHE D 23 SITE 3 AC9 10 HOH D 317 HOH D 338 SITE 1 AD1 4 ARG C 21 HIS D 52 HOH D 314 HOH D 325 CRYST1 60.930 66.041 72.104 102.30 101.22 109.70 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016412 0.005877 0.005274 0.00000 SCALE2 0.000000 0.016084 0.005091 0.00000 SCALE3 0.000000 0.000000 0.014830 0.00000