HEADER OXIDOREDUCTASE 03-MAY-18 6GGU TITLE CRYSTAL STRUCTURE OF NATIVE FE-HYDROGENASE FROM METHANOTHERMOBACTER TITLE 2 MARBURGENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5,10-METHENYLTETRAHYDROMETHANOPTERIN HYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H(2)-DEPENDENT METHYLENE-H(4)MPT DEHYDROGENASE,H(2)-FORMING COMPND 5 N(5),N(10)-METHYLENETETRAHYDROMETHANOPTERIN DEHYDROGENASE,N(5),N(10)- COMPND 6 METHENYLTETRAHYDROMETHANOPTERIN HYDROGENASE; COMPND 7 EC: 1.12.98.2; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER MARBURGENSIS STR. MARBURG; SOURCE 3 ORGANISM_COMMON: METHANOBACTERIUM THERMOAUTOTROPHICUM; SOURCE 4 ORGANISM_TAXID: 79929; SOURCE 5 VARIANT: /; SOURCE 6 CELL_LINE: /; SOURCE 7 ATCC: /; SOURCE 8 ORGAN: /; SOURCE 9 TISSUE: / KEYWDS [FE]-HYDROGENASE, FE-GUANYLYLPYRIDINOL COFACTOR, H2, HYDROGENASE, KEYWDS 2 METHANOGENESIS, METHENYL-TETRAHYDROMETHANOPTERIN, METHYLENE- KEYWDS 3 TETRAHYDROMETHANOPTERIN, HYDROGENATION, OLIGOMERISATION, PROTECTION, KEYWDS 4 METALLOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.WAGNER,G.HUANG,U.ERMLER,S.SHIMA REVDAT 2 17-JAN-24 6GGU 1 REMARK REVDAT 1 22-MAY-19 6GGU 0 JRNL AUTH T.WAGNER,G.HUANG,U.ERMLER,S.SHIMA JRNL TITL SELF-PROTECTION OF THE CATALYTIC IRON CENTER OF A JRNL TITL 2 METHANOGENIC [FE]-HYDROGENASE VIA A DYNAMIC DIMER-TO-HEXAMER JRNL TITL 3 TRANSFORMATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2882 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2315 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2728 REMARK 3 BIN R VALUE (WORKING SET) : 0.2285 REMARK 3 BIN FREE R VALUE : 0.2848 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.34 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 154 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2638 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.99750 REMARK 3 B22 (A**2) : -5.99750 REMARK 3 B33 (A**2) : 11.99500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.330 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.317 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.239 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5480 ; 4.000 ; HARMONIC REMARK 3 BOND ANGLES : 9951 ; 4.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1228 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 836 ; 20.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5480 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 376 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6311 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.45 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.55 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 62.1965 -20.5885 -3.5441 REMARK 3 T TENSOR REMARK 3 T11: -0.0150 T22: -0.1643 REMARK 3 T33: 0.0456 T12: 0.0091 REMARK 3 T13: -0.0174 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 0.7407 L22: 1.2366 REMARK 3 L33: 1.2794 L12: 0.1538 REMARK 3 L13: -0.4718 L23: 0.1922 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: -0.1221 S13: 0.1430 REMARK 3 S21: 0.3156 S22: -0.0705 S23: 0.0897 REMARK 3 S31: 0.0997 S32: -0.0109 S33: 0.0798 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18373 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 47.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.31100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.91400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JJF REMARK 200 REMARK 200 REMARK: HEXAGONAL ROD MORPHOLOGY REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: [FE]-HYDROGENASE WAS CRYSTALLIZED REMARK 280 UNDER RED LIGHT CONDITION, IN AN ANAEROBIC TENT CONTAINING A GAS REMARK 280 PHASE OF 100% N2 BY THE SITTING DROP VAPUOR DIFFUSION METHOD. REMARK 280 THE CRYSTALLIZATION DROPS CONTAINED 0.7 UL OF 30 MG.ML-1 PROTEIN REMARK 280 AND 2 MM METHENYL-H4MPT+ MIXED WITH 0.7 UL OF 0.1 M MES PH 6.0 REMARK 280 AND 0.8 M AMMONIUM SULFATE AND SPOTTED ON 96-WELL 2-DROP MRC REMARK 280 CRYSTALLIZATION PLATES IN POLYSTYRENE (MOLECULAR DIMENSIONS, REMARK 280 SUFFOLK, UK). THE BEST CRYSTAL APPEARED WITHIN 2.5 MONTHS., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.53000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.53000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.53000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.53000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.53000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.53000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 49870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -539.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 72.03000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -124.75962 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 144.06000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -47.53000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 144.06000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -47.53000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 72.03000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 -124.75962 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -47.53000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 557 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 42 -134.58 49.78 REMARK 500 ALA A 171 -161.21 -125.18 REMARK 500 THR A 200 -153.81 -150.29 REMARK 500 ALA A 206 -179.05 172.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE9 A 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 172 SG REMARK 620 2 FE9 A 405 N1 88.7 REMARK 620 3 FE9 A 405 C1F 175.1 87.1 REMARK 620 4 FE9 A 405 C8 77.7 83.8 99.4 REMARK 620 5 FE9 A 405 C2F 94.3 171.6 89.6 89.1 REMARK 620 6 ASP A 189 OD2 47.3 70.4 128.6 34.9 106.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE9 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 410 DBREF 6GGU A 1 344 UNP P32440 HMD_METTM 1 344 SEQRES 1 A 344 MET LYS LEU ALA ILE LEU GLY ALA GLY CYS TYR ARG THR SEQRES 2 A 344 HIS ALA ALA SER GLY ILE THR ASN PHE SER ARG ALA CYS SEQRES 3 A 344 GLU VAL ALA GLU MET VAL GLY LYS PRO GLU ILE ALA MET SEQRES 4 A 344 THR HIS SER THR ILE THR MET GLY ALA GLU LEU LYS GLU SEQRES 5 A 344 LEU ALA GLY VAL ASP GLU VAL VAL VAL ALA ASP PRO VAL SEQRES 6 A 344 PHE ASP ASN GLN PHE THR VAL ILE ASP ASP PHE ALA TYR SEQRES 7 A 344 GLU ASP VAL ILE GLU ALA HIS LYS GLU ASP PRO GLU LYS SEQRES 8 A 344 ILE MET PRO GLN ILE ARG GLU LYS VAL ASN GLU VAL ALA SEQRES 9 A 344 LYS GLU LEU PRO LYS PRO PRO GLU GLY ALA ILE HIS PHE SEQRES 10 A 344 THR HIS PRO GLU ASP LEU GLY PHE GLU ILE THR THR ASP SEQRES 11 A 344 ASP ARG GLU ALA VAL ALA ASP ALA ASP PHE ILE MET THR SEQRES 12 A 344 TRP PHE PRO LYS GLY ASP MET GLN PRO ASP ILE ILE ASN SEQRES 13 A 344 LYS PHE ILE ASP ASP ILE LYS PRO GLY ALA ILE VAL THR SEQRES 14 A 344 HIS ALA CYS THR ILE PRO THR THR LYS PHE TYR LYS ILE SEQRES 15 A 344 PHE GLU GLN LYS HIS GLY ASP LEU VAL THR LYS PRO GLU SEQRES 16 A 344 THR LEU ASN VAL THR SER TYR HIS PRO GLY ALA VAL PRO SEQRES 17 A 344 GLU MET LYS GLY GLN VAL TYR ILE ALA GLU GLY TYR ALA SEQRES 18 A 344 SER GLU ASP ALA ILE GLU THR LEU PHE GLU LEU GLY GLN SEQRES 19 A 344 LYS ALA ARG GLY ASN ALA TYR ARG LEU PRO ALA GLU LEU SEQRES 20 A 344 LEU GLY PRO VAL CYS ASP MET CYS SER ALA LEU THR ALA SEQRES 21 A 344 ILE THR TYR ALA GLY ILE LEU SER TYR ARG ASP SER VAL SEQRES 22 A 344 THR GLN VAL LEU GLY ALA PRO ALA SER PHE ALA GLN MET SEQRES 23 A 344 MET ALA LYS GLU SER LEU GLU GLN ILE THR ALA LEU MET SEQRES 24 A 344 GLU LYS VAL GLY ILE ASP LYS MET GLU GLU ASN LEU ASP SEQRES 25 A 344 PRO GLY ALA LEU LEU GLY THR ALA ASP SER MET ASN PHE SEQRES 26 A 344 GLY ALA SER ALA GLU ILE LEU PRO THR VAL PHE GLU ILE SEQRES 27 A 344 LEU GLU LYS ARG LYS LYS HET MES A 401 12 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET FE9 A 405 41 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM SO4 SULFATE ION HETNAM FE9 IRON-GUANYLYL PYRIDINOL COFACTOR HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MES C6 H13 N O4 S FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 FE9 C21 H23 FE N6 O13 P S 4+ FORMUL 7 GOL 5(C3 H8 O3) FORMUL 12 HOH *57(H2 O) HELIX 1 AA1 TYR A 11 GLY A 18 1 8 HELIX 2 AA2 PHE A 22 GLY A 33 1 12 HELIX 3 AA3 LYS A 34 THR A 40 5 7 HELIX 4 AA4 HIS A 41 LEU A 53 1 13 HELIX 5 AA5 PRO A 64 ASP A 67 5 4 HELIX 6 AA6 ALA A 77 LYS A 86 1 10 HELIX 7 AA7 ASP A 88 LYS A 91 5 4 HELIX 8 AA8 ILE A 92 LEU A 107 1 16 HELIX 9 AA9 HIS A 119 GLY A 124 5 6 HELIX 10 AB1 ASP A 130 ALA A 136 1 7 HELIX 11 AB2 ASP A 149 LYS A 157 1 9 HELIX 12 AB3 PHE A 158 ILE A 162 5 5 HELIX 13 AB4 PRO A 175 GLU A 184 1 10 HELIX 14 AB5 SER A 222 GLY A 238 1 17 HELIX 15 AB6 LEU A 247 ASP A 253 1 7 HELIX 16 AB7 CYS A 255 VAL A 276 1 22 HELIX 17 AB8 PRO A 280 GLY A 303 1 24 HELIX 18 AB9 LYS A 306 LEU A 311 1 6 HELIX 19 AC1 ASP A 312 ALA A 315 5 4 HELIX 20 AC2 LEU A 316 ASP A 321 1 6 HELIX 21 AC3 SER A 322 ASN A 324 5 3 HELIX 22 AC4 PHE A 325 GLU A 330 5 6 HELIX 23 AC5 ILE A 331 LYS A 343 1 13 SHEET 1 AA1 6 GLU A 126 THR A 128 0 SHEET 2 AA1 6 GLU A 58 ALA A 62 1 N VAL A 61 O GLU A 126 SHEET 3 AA1 6 LYS A 2 LEU A 6 1 N ILE A 5 O ALA A 62 SHEET 4 AA1 6 PHE A 140 THR A 143 1 O PHE A 140 N ALA A 4 SHEET 5 AA1 6 ILE A 167 HIS A 170 1 O ILE A 167 N ILE A 141 SHEET 6 AA1 6 ASN A 198 SER A 201 1 O THR A 200 N VAL A 168 SHEET 1 AA2 2 GLN A 69 VAL A 72 0 SHEET 2 AA2 2 GLY A 113 HIS A 116 1 O HIS A 116 N THR A 71 SHEET 1 AA3 2 VAL A 214 GLU A 218 0 SHEET 2 AA3 2 ALA A 240 PRO A 244 1 O TYR A 241 N ILE A 216 LINK SG CYS A 172 FE FE9 A 405 1555 1555 2.64 LINK OD2 ASP A 189 FE FE9 A 405 1555 2545 2.31 CISPEP 1 PRO A 110 PRO A 111 0 0.27 SITE 1 AC1 9 PHE A 230 ASN A 239 ALA A 240 TYR A 241 SITE 2 AC1 9 ARG A 242 ASP A 312 LYS A 344 HOH A 508 SITE 3 AC1 9 HOH A 521 SITE 1 AC2 3 GLN A 285 LYS A 289 GLU A 300 SITE 1 AC3 3 LYS A 181 LYS A 186 LYS A 289 SITE 1 AC4 3 PRO A 175 LYS A 186 HIS A 187 SITE 1 AC5 27 LEU A 6 GLY A 7 GLY A 9 CYS A 10 SITE 2 AC5 27 THR A 13 ALA A 62 ASP A 63 PRO A 64 SITE 3 AC5 27 PRO A 110 PRO A 111 ASP A 131 TRP A 144 SITE 4 AC5 27 PHE A 145 PRO A 146 ILE A 154 ALA A 171 SITE 5 AC5 27 CYS A 172 THR A 173 ASP A 189 HIS A 203 SITE 6 AC5 27 PRO A 204 GLY A 205 ALA A 206 VAL A 207 SITE 7 AC5 27 PRO A 208 HOH A 502 HOH A 535 SITE 1 AC6 4 GLU A 340 HOH A 531 HOH A 532 HOH A 536 SITE 1 AC7 6 SER A 17 LEU A 190 VAL A 191 LYS A 193 SITE 2 AC7 6 GOL A 408 HOH A 515 SITE 1 AC8 5 ILE A 19 SER A 322 PHE A 325 GOL A 407 SITE 2 AC8 5 HOH A 505 SITE 1 AC9 3 ALA A 77 TYR A 78 GLU A 79 SITE 1 AD1 1 GLY A 326 CRYST1 144.060 144.060 95.060 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006942 0.004008 0.000000 0.00000 SCALE2 0.000000 0.008015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010520 0.00000