HEADER DNA 14-MAY-18 6GIM TITLE STRUCTURE OF THE DNA DUPLEX D(AAATTT)2 WITH [N-(3-CHLORO-4-((4,5- TITLE 2 DIHYDRO-1H-IMIDAZOL-2-YL)AMINO)PHENYL)-4-((4,5-DIHYDRO-1H-IMIDAZOL-2- TITLE 3 YL)AMINO)BENZAMIDE] - (DRUG JNI18) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*AP*AP*TP*TP*T)-3'); COMPND 3 CHAIN: D, C, A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 4 ORGANISM_TAXID: 5691 KEYWDS AT-RICH DNA, DNA BINDING DRUGS, MINOR GROOVE BINDING DRUGS, KEYWDS 2 ANTIPARASITIC DRUGS, TRYPANOSOMA BRUCEI, DNA EXPDTA X-RAY DIFFRACTION AUTHOR C.R.MILLAN,C.DARDONVILE,H.P.DE KONING,N.SAPERAS,J.L.CAMPOS REVDAT 3 01-MAY-24 6GIM 1 LINK REVDAT 2 24-OCT-18 6GIM 1 REMARK REVDAT 1 08-AUG-18 6GIM 0 JRNL AUTH C.R.MILLAN,F.J.ACOSTA-REYES,L.LAGARTERA,G.U.EBILOMA, JRNL AUTH 2 L.LEMGRUBER,J.J.NUE MARTINEZ,N.SAPERAS,C.DARDONVILLE, JRNL AUTH 3 H.P.DE KONING,J.L.CAMPOS JRNL TITL FUNCTIONAL AND STRUCTURAL ANALYSIS OF AT-SPECIFIC MINOR JRNL TITL 2 GROOVE BINDERS THAT DISRUPT DNA-PROTEIN INTERACTIONS AND JRNL TITL 3 CAUSE DISINTEGRATION OF THE TRYPANOSOMA BRUCEI KINETOPLAST. JRNL REF NUCLEIC ACIDS RES. V. 45 8378 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28637278 JRNL DOI 10.1093/NAR/GKX521 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 11306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 557 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 810 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 480 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.476 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 629 ; 0.012 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 340 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 946 ; 1.937 ; 1.391 REMARK 3 BOND ANGLES OTHERS (DEGREES): 790 ; 1.682 ; 2.749 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ; 8.680 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 72 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 426 ; 0.023 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 138 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 629 ; 2.228 ; 1.543 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 630 ; 2.227 ; 1.542 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 947 ; 2.751 ; 2.334 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 856 ; 3.070 ;14.202 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 839 ; 2.910 ;13.735 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 968 ; 3.497 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 70 ;15.162 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 933 ; 8.746 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200009955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12256 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 36.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 7.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.4.05 REMARK 200 STARTING MODEL: IDEALISED DNA MODEL FROM TURBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM MAGNESIUM ACETATE, 0.1 MM REMARK 280 SPERMINE, 5% 2-METHYL-2,4-PENTANEDIOL (MPD); EQUILIBRATED REMARK 280 AGAINST 20% MPD RESERVOIR, PH 6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 8.85149 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.04341 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 8.85149 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 36.04341 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -4.92703 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 72.08682 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 22.63000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O1 EZK D 101 LIES ON A SPECIAL POSITION. REMARK 375 O1 EZK C 101 LIES ON A SPECIAL POSITION. REMARK 375 MG MG C 102 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 6 N1 DT D 6 C2 0.058 REMARK 500 DT D 6 C2 DT D 6 N3 -0.062 REMARK 500 DT D 6 C5 DT D 6 C6 0.048 REMARK 500 DT D 6 C6 DT D 6 N1 -0.060 REMARK 500 DT B 6 C2 DT B 6 N3 -0.050 REMARK 500 DT B 6 C4 DT B 6 C5 0.061 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 6 N1 - C2 - O2 ANGL. DEV. = -5.3 DEGREES REMARK 500 DA C 2 O5' - C5' - C4' ANGL. DEV. = -4.8 DEGREES REMARK 500 DT A 5 O5' - P - OP2 ANGL. DEV. = -6.7 DEGREES REMARK 500 DT B 6 O4' - C1' - C2' ANGL. DEV. = 4.5 DEGREES REMARK 500 DT B 6 C6 - N1 - C2 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT B 6 N1 - C2 - N3 ANGL. DEV. = 7.8 DEGREES REMARK 500 DT B 6 N1 - C2 - O2 ANGL. DEV. = -6.8 DEGREES REMARK 500 DT B 6 N3 - C4 - O4 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT B 6 C5 - C4 - O4 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 220 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 217 O REMARK 620 2 HOH C 217 O 80.0 REMARK 620 3 HOH C 223 O 85.6 85.4 REMARK 620 4 HOH C 223 O 85.4 85.6 168.2 REMARK 620 5 HOH C 224 O 169.9 93.0 101.1 86.9 REMARK 620 6 HOH C 224 O 93.0 169.9 86.9 101.1 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 220 O REMARK 620 2 HOH C 226 O 84.9 REMARK 620 3 DT A 4 OP1 60.5 139.9 REMARK 620 4 HOH A 218 O 92.7 93.9 106.5 REMARK 620 5 HOH B 210 O 89.1 164.6 29.3 100.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 207 O REMARK 620 2 HOH A 208 O 89.9 REMARK 620 3 HOH A 211 O 92.6 86.8 REMARK 620 4 HOH A 221 O 88.8 92.9 178.6 REMARK 620 5 HOH B 205 O 177.3 89.4 90.1 88.5 REMARK 620 6 HOH B 206 O 89.8 177.3 90.5 89.8 90.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EZK D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EZK C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EZK B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 102 DBREF 6GIM D 1 6 PDB 6GIM 6GIM 1 6 DBREF 6GIM C 1 6 PDB 6GIM 6GIM 1 6 DBREF 6GIM A 1 6 PDB 6GIM 6GIM 1 6 DBREF 6GIM B 1 6 PDB 6GIM 6GIM 1 6 SEQRES 1 D 6 DA DA DA DT DT DT SEQRES 1 C 6 DA DA DA DT DT DT SEQRES 1 A 6 DA DA DA DT DT DT SEQRES 1 B 6 DA DA DA DT DT DT HET EZK D 101 28 HET EZK C 101 28 HET MG C 102 1 HET MG A 101 1 HET EZK B 101 28 HET MG B 102 1 HETNAM EZK [4-[(3-CHLORANYL-4-IMIDAZOLIDIN-2-YLIDENEAZANIUMYL- HETNAM 2 EZK PHENYL)CARBAMOYL]PHENYL]-IMIDAZOLIDIN-2-YLIDENE- HETNAM 3 EZK AZANIUM HETNAM MG MAGNESIUM ION FORMUL 5 EZK 3(C19 H22 CL N7 O 2+) FORMUL 7 MG 3(MG 2+) FORMUL 11 HOH *95(H2 O) LINK MG MG C 102 O HOH C 217 1555 1555 2.29 LINK MG MG C 102 O HOH C 217 1555 2755 2.29 LINK MG MG C 102 O HOH C 223 1555 1555 2.15 LINK MG MG C 102 O HOH C 223 1555 2755 2.15 LINK MG MG C 102 O HOH C 224 1555 1555 1.91 LINK MG MG C 102 O HOH C 224 1555 2755 1.91 LINK O HOH C 220 MG MG B 102 1555 1555 2.04 LINK O HOH C 226 MG MG B 102 1555 1555 1.98 LINK OP1 DT A 4 MG MG B 102 1555 1455 2.05 LINK MG MG A 101 O HOH A 207 1555 1555 2.19 LINK MG MG A 101 O HOH A 208 1555 1555 2.04 LINK MG MG A 101 O HOH A 211 1555 1555 2.11 LINK MG MG A 101 O HOH A 221 1555 1555 2.11 LINK MG MG A 101 O HOH B 205 1555 4545 2.09 LINK MG MG A 101 O HOH B 206 1555 4545 2.04 LINK O HOH A 218 MG MG B 102 1655 1555 2.06 LINK MG MG B 102 O HOH B 210 1555 1555 1.92 SITE 1 AC1 6 DA D 2 DA D 3 DT D 4 DT D 5 SITE 2 AC1 6 DT D 6 HOH D 207 SITE 1 AC2 7 DA C 2 DA C 3 DT C 4 DT C 5 SITE 2 AC2 7 DT C 6 HOH C 210 HOH C 214 SITE 1 AC3 3 HOH C 217 HOH C 223 HOH C 224 SITE 1 AC4 6 HOH A 207 HOH A 208 HOH A 211 HOH A 221 SITE 2 AC4 6 HOH B 205 HOH B 206 SITE 1 AC5 11 DA A 2 DA A 3 DT A 4 DT A 5 SITE 2 AC5 11 DT A 6 DA B 2 DA B 3 DT B 4 SITE 3 AC5 11 DT B 5 DT B 6 HOH B 207 SITE 1 AC6 5 DT A 4 HOH A 218 HOH B 210 HOH C 220 SITE 2 AC6 5 HOH C 226 CRYST1 22.630 40.470 72.255 90.00 93.91 90.00 I 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.044189 0.000000 0.003018 0.00000 SCALE2 0.000000 0.024710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013872 0.00000