HEADER HYDROLASE 15-MAY-18 6GIZ TITLE PURPLE ACID PHYTASE FROM WHEAT ISOFORM B2 - SUBSTRATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURPLE ACID PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRITICUM AESTIVUM; SOURCE 3 ORGANISM_COMMON: BREAD WHEAT; SOURCE 4 ORGANISM_TAXID: 4565; SOURCE 5 TISSUE: ALEURONE VACUOLE; SOURCE 6 GENE: PAPHY; SOURCE 7 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: KM71H(OCH1::G418R); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGAPZALPHAA KEYWDS EC 3.1.3.26, HYDROLASE, PURPLE ACID PHYTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.FABA-RODRIGUEZ,C.A.BREARLEY,A.M.HEMMINGS REVDAT 4 17-JAN-24 6GIZ 1 REMARK REVDAT 3 08-JUN-22 6GIZ 1 JRNL REMARK HETSYN REVDAT 2 29-JUL-20 6GIZ 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 27-NOV-19 6GIZ 0 JRNL AUTH R.FABA-RODRIGUEZ,Y.GU,M.SALMON,G.DIONISIO,H.BRINCH-PEDERSEN, JRNL AUTH 2 C.A.BREARLEY,A.M.HEMMINGS JRNL TITL STRUCTURE OF A CEREAL PURPLE ACID PHYTASE PROVIDES NEW JRNL TITL 2 INSIGHTS TO PHYTATE DEGRADATION IN PLANTS. JRNL REF PLANT COMMUN. V. 3 00305 2022 JRNL REFN ISSN 2590-3462 JRNL PMID 35529950 JRNL DOI 10.1016/J.XPLC.2022.100305 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 94712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 4709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1285 - 4.7836 1.00 2990 159 0.1467 0.1618 REMARK 3 2 4.7836 - 3.7974 0.99 2992 157 0.1199 0.1209 REMARK 3 3 3.7974 - 3.3175 0.99 2997 156 0.1283 0.1634 REMARK 3 4 3.3175 - 3.0142 1.00 2989 133 0.1382 0.1680 REMARK 3 5 3.0142 - 2.7982 1.00 3023 149 0.1405 0.1813 REMARK 3 6 2.7982 - 2.6332 1.00 2945 191 0.1292 0.1690 REMARK 3 7 2.6332 - 2.5014 1.00 3038 159 0.1279 0.1634 REMARK 3 8 2.5014 - 2.3925 1.00 2955 154 0.1217 0.1531 REMARK 3 9 2.3925 - 2.3004 1.00 3027 178 0.1234 0.1449 REMARK 3 10 2.3004 - 2.2210 1.00 2980 148 0.1185 0.1515 REMARK 3 11 2.2210 - 2.1516 1.00 3009 159 0.1188 0.1438 REMARK 3 12 2.1516 - 2.0901 1.00 2978 180 0.1209 0.1577 REMARK 3 13 2.0901 - 2.0350 1.00 2999 168 0.1203 0.1671 REMARK 3 14 2.0350 - 1.9854 1.00 2955 173 0.1222 0.1590 REMARK 3 15 1.9854 - 1.9403 1.00 3018 173 0.1199 0.1658 REMARK 3 16 1.9403 - 1.8990 1.00 3033 148 0.1322 0.1800 REMARK 3 17 1.8990 - 1.8610 1.00 2982 153 0.1342 0.1834 REMARK 3 18 1.8610 - 1.8259 1.00 3020 137 0.1375 0.1711 REMARK 3 19 1.8259 - 1.7932 1.00 3027 150 0.1389 0.1847 REMARK 3 20 1.7932 - 1.7629 1.00 2973 172 0.1455 0.2036 REMARK 3 21 1.7629 - 1.7344 1.00 3010 150 0.1494 0.2070 REMARK 3 22 1.7344 - 1.7077 0.99 3028 126 0.1613 0.2048 REMARK 3 23 1.7077 - 1.6826 1.00 3017 161 0.1610 0.2005 REMARK 3 24 1.6826 - 1.6589 1.00 2932 170 0.1694 0.2067 REMARK 3 25 1.6589 - 1.6365 1.00 3010 149 0.1806 0.2683 REMARK 3 26 1.6365 - 1.6152 1.00 3087 130 0.1962 0.2374 REMARK 3 27 1.6152 - 1.5950 1.00 2950 151 0.2106 0.2420 REMARK 3 28 1.5950 - 1.5758 1.00 3047 158 0.2230 0.3204 REMARK 3 29 1.5758 - 1.5575 1.00 3003 169 0.2423 0.2671 REMARK 3 30 1.5575 - 1.5400 1.00 2989 148 0.2566 0.3008 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4372 REMARK 3 ANGLE : 0.896 5950 REMARK 3 CHIRALITY : 0.055 637 REMARK 3 PLANARITY : 0.005 762 REMARK 3 DIHEDRAL : 14.830 2488 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 48.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.71600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GIT REMARK 200 REMARK 200 REMARK: CUBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM THIOCYANATE; 20% (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.36500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.58380 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.68000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 63.36500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 36.58380 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.68000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 63.36500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 36.58380 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.68000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.16760 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 71.36000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 73.16760 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 71.36000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 73.16760 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 71.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ASP A 20 REMARK 465 ARG A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 509 REMARK 465 LYS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 465 HIS A 516 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 303 CA CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1079 O HOH A 1117 1.99 REMARK 500 O HOH A 940 O HOH A 1053 2.07 REMARK 500 O HOH A 946 O HOH A 1127 2.07 REMARK 500 NH1 ARG A 85 O HOH A 701 2.09 REMARK 500 OD2 ASP A 26 OH TYR A 208 2.11 REMARK 500 O HOH A 823 O HOH A 919 2.13 REMARK 500 O HOH A 734 O HOH A 973 2.15 REMARK 500 OD2 ASP A 26 O HOH A 702 2.15 REMARK 500 NZ LYS A 134 O1 PEG A 620 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 109 47.17 -90.93 REMARK 500 LEU A 199 48.16 -90.99 REMARK 500 ASP A 201 75.84 64.12 REMARK 500 GLN A 264 -158.98 -140.17 REMARK 500 PRO A 280 47.81 -80.00 REMARK 500 HIS A 377 -54.03 78.77 REMARK 500 ASP A 404 42.38 -102.07 REMARK 500 ASN A 475 -167.66 -162.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1133 DISTANCE = 7.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 174 OD2 REMARK 620 2 ASP A 201 OD2 85.5 REMARK 620 3 TYR A 204 OH 115.8 95.5 REMARK 620 4 HIS A 379 NE2 101.8 163.0 95.0 REMARK 620 5 PO4 A 612 O1 147.5 87.2 96.4 78.4 REMARK 620 6 HOH A 709 O 83.4 78.3 159.6 87.2 64.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 201 OD2 REMARK 620 2 ASN A 258 OD1 104.4 REMARK 620 3 HIS A 340 NE2 87.4 88.8 REMARK 620 4 HIS A 377 ND1 157.9 97.3 89.1 REMARK 620 5 PO4 A 612 O2 100.7 82.0 169.0 86.2 REMARK 620 6 HOH A 709 O 79.1 152.5 118.7 83.5 70.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GIT RELATED DB: PDB REMARK 900 6GIT CONTAINS THE SAME PROTEIN IN ITS PRODUCT COMPLEX DBREF 6GIZ A 1 510 UNP C4PKL0 C4PKL0_WHEAT 21 530 SEQADV 6GIZ HIS A 511 UNP C4PKL0 EXPRESSION TAG SEQADV 6GIZ HIS A 512 UNP C4PKL0 EXPRESSION TAG SEQADV 6GIZ HIS A 513 UNP C4PKL0 EXPRESSION TAG SEQADV 6GIZ HIS A 514 UNP C4PKL0 EXPRESSION TAG SEQADV 6GIZ HIS A 515 UNP C4PKL0 EXPRESSION TAG SEQADV 6GIZ HIS A 516 UNP C4PKL0 EXPRESSION TAG SEQRES 1 A 516 GLU PRO ALA SER THR LEU GLU GLY PRO SER ARG PRO VAL SEQRES 2 A 516 THR VAL PRO LEU ARG GLU ASP ARG GLY HIS ALA VAL ASP SEQRES 3 A 516 LEU PRO ASP THR ASP PRO ARG VAL GLN ARG ARG VAL THR SEQRES 4 A 516 GLY TRP ALA PRO GLU GLN ILE ALA VAL ALA LEU SER ALA SEQRES 5 A 516 ALA PRO THR SER ALA TRP VAL SER TRP ILE THR GLY ASP SEQRES 6 A 516 PHE GLN MET GLY GLY ALA VAL LYS PRO LEU ASP PRO GLY SEQRES 7 A 516 THR VAL GLY SER VAL VAL ARG TYR GLY LEU ALA ALA ASP SEQRES 8 A 516 SER LEU VAL ARG GLU ALA THR GLY ASP ALA LEU VAL TYR SEQRES 9 A 516 SER GLN LEU TYR PRO PHE GLU GLY LEU GLN ASN TYR THR SEQRES 10 A 516 SER GLY ILE ILE HIS HIS VAL ARG LEU GLN GLY LEU GLU SEQRES 11 A 516 PRO GLY THR LYS TYR TYR TYR GLN CYS GLY ASP PRO SER SEQRES 12 A 516 ILE PRO GLY ALA MET SER ALA VAL HIS ALA PHE ARG THR SEQRES 13 A 516 MET PRO ALA VAL GLY PRO ARG SER TYR PRO GLY ARG ILE SEQRES 14 A 516 ALA VAL VAL GLY ASP LEU GLY LEU THR TYR ASN THR THR SEQRES 15 A 516 SER THR VAL GLU HIS MET ALA SER ASN GLN PRO ASP LEU SEQRES 16 A 516 VAL LEU LEU LEU GLY ASP VAL SER TYR ALA ASN LEU TYR SEQRES 17 A 516 LEU THR ASN GLY THR GLY THR ASP CYS TYR SER CYS SER SEQRES 18 A 516 PHE ALA LYS SER THR PRO ILE HIS GLU THR TYR GLN PRO SEQRES 19 A 516 ARG TRP ASP TYR TRP GLY ARG TYR MET GLU PRO VAL THR SEQRES 20 A 516 SER SER THR PRO MET MET VAL VAL GLU GLY ASN HIS GLU SEQRES 21 A 516 ILE GLU GLN GLN ILE GLY ASN LYS THR PHE ALA ALA TYR SEQRES 22 A 516 SER ALA ARG PHE ALA PHE PRO SER MET GLU SER GLU SER SEQRES 23 A 516 PHE SER PRO PHE TYR TYR SER PHE ASP ALA GLY GLY ILE SEQRES 24 A 516 HIS PHE ILE MET LEU ALA ALA TYR ALA ASP TYR SER LYS SEQRES 25 A 516 SER GLY GLU GLN TYR ARG TRP LEU GLU LYS ASP LEU ALA SEQRES 26 A 516 LYS VAL ASP ARG SER VAL THR PRO TRP LEU VAL ALA GLY SEQRES 27 A 516 TRP HIS ALA PRO TRP TYR SER THR TYR LYS ALA HIS TYR SEQRES 28 A 516 ARG GLU ALA GLU CYS MET ARG VAL ALA MET GLU GLU LEU SEQRES 29 A 516 LEU TYR SER TYR GLY LEU ASP ILE VAL PHE THR GLY HIS SEQRES 30 A 516 VAL HIS ALA TYR GLU ARG SER ASN ARG VAL PHE ASN TYR SEQRES 31 A 516 THR LEU ASP PRO CYS GLY ALA VAL HIS ILE SER VAL GLY SEQRES 32 A 516 ASP GLY GLY ASN ARG GLU LYS MET ALA THR THR HIS ALA SEQRES 33 A 516 ASP ASP PRO GLY ARG CYS PRO GLU PRO MET SER THR PRO SEQRES 34 A 516 ASP ALA PHE MET GLY GLY PHE CYS ALA PHE ASN PHE THR SEQRES 35 A 516 SER GLY PRO ALA ALA GLY SER PHE CYS TRP ASP ARG GLN SEQRES 36 A 516 PRO ASP TYR SER ALA TYR ARG GLU SER SER PHE GLY HIS SEQRES 37 A 516 GLY ILE LEU GLU VAL LYS ASN GLU THR HIS ALA LEU TRP SEQRES 38 A 516 LYS TRP HIS ARG ASN GLN ASP LEU TYR GLN GLY ALA VAL SEQRES 39 A 516 GLY ASP GLU ILE TYR ILE VAL ARG GLU PRO GLU ARG CYS SEQRES 40 A 516 LEU LEU LYS HIS HIS HIS HIS HIS HIS HET NAG B 1 27 HET NAG B 2 28 HET NAG C 1 27 HET NAG C 2 28 HET FE A 601 1 HET FE A 602 1 HET NAG A 607 28 HET NAG A 608 28 HET NAG A 609 28 HET NAG A 610 28 HET NAG A 611 28 HET PO4 A 612 5 HET PO4 A 613 5 HET PO4 A 614 5 HET PGE A 615 24 HET PGE A 616 24 HET PGE A 617 24 HET PEG A 618 17 HET PEG A 619 17 HET PEG A 620 17 HET PEG A 621 17 HET EDO A 622 10 HET EDO A 623 10 HET EDO A 624 10 HET EDO A 625 10 HET EDO A 626 10 HET EDO A 627 10 HET EDO A 628 10 HET EDO A 629 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FE FE (III) ION HETNAM PO4 PHOSPHATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 9(C8 H15 N O6) FORMUL 4 FE 2(FE 3+) FORMUL 11 PO4 3(O4 P 3-) FORMUL 14 PGE 3(C6 H14 O4) FORMUL 17 PEG 4(C4 H10 O3) FORMUL 21 EDO 8(C2 H6 O2) FORMUL 29 HOH *433(H2 O) HELIX 1 AA1 LEU A 6 GLY A 8 5 3 HELIX 2 AA2 ASP A 76 VAL A 80 5 5 HELIX 3 AA3 THR A 178 ASN A 191 1 14 HELIX 4 AA4 TYR A 204 TYR A 208 5 5 HELIX 5 AA5 CYS A 217 PHE A 222 1 6 HELIX 6 AA6 GLN A 233 SER A 248 1 16 HELIX 7 AA7 GLY A 257 ILE A 261 5 5 HELIX 8 AA8 GLN A 264 LYS A 268 5 5 HELIX 9 AA9 PHE A 270 PHE A 277 1 8 HELIX 10 AB1 GLY A 314 VAL A 327 1 14 HELIX 11 AB2 ALA A 354 TYR A 368 1 15 HELIX 12 AB3 GLU A 424 THR A 428 5 5 HELIX 13 AB4 GLU A 503 LEU A 508 1 6 SHEET 1 AA1 7 ALA A 3 SER A 4 0 SHEET 2 AA1 7 ASP A 496 VAL A 501 1 O TYR A 499 N ALA A 3 SHEET 3 AA1 7 HIS A 478 ARG A 485 -1 N ALA A 479 O ILE A 500 SHEET 4 AA1 7 GLY A 467 VAL A 473 -1 N GLU A 472 O LEU A 480 SHEET 5 AA1 7 ILE A 169 VAL A 172 -1 N ILE A 169 O LEU A 471 SHEET 6 AA1 7 LEU A 195 LEU A 198 1 O LEU A 195 N ALA A 170 SHEET 7 AA1 7 MET A 252 VAL A 254 1 O MET A 253 N LEU A 198 SHEET 1 AA2 8 VAL A 13 THR A 14 0 SHEET 2 AA2 8 SER A 459 GLU A 463 1 O ARG A 462 N VAL A 13 SHEET 3 AA2 8 TYR A 381 SER A 384 -1 N TYR A 381 O GLU A 463 SHEET 4 AA2 8 VAL A 398 VAL A 402 -1 O SER A 401 N GLU A 382 SHEET 5 AA2 8 ILE A 372 THR A 375 1 N VAL A 373 O ILE A 400 SHEET 6 AA2 8 TRP A 334 GLY A 338 1 N ALA A 337 O PHE A 374 SHEET 7 AA2 8 ILE A 299 MET A 303 1 N HIS A 300 O TRP A 334 SHEET 8 AA2 8 TYR A 292 ALA A 296 -1 N PHE A 294 O PHE A 301 SHEET 1 AA3 4 PRO A 43 LEU A 50 0 SHEET 2 AA3 4 ALA A 57 THR A 63 -1 O TRP A 58 N ALA A 49 SHEET 3 AA3 4 ILE A 120 LEU A 126 -1 O LEU A 126 N ALA A 57 SHEET 4 AA3 4 ASP A 100 LEU A 102 -1 N LEU A 102 O ILE A 121 SHEET 1 AA4 3 GLN A 67 MET A 68 0 SHEET 2 AA4 3 TYR A 116 THR A 117 -1 O THR A 117 N GLN A 67 SHEET 3 AA4 3 SER A 105 GLN A 106 -1 N GLN A 106 O TYR A 116 SHEET 1 AA5 4 ARG A 95 THR A 98 0 SHEET 2 AA5 4 VAL A 83 GLY A 87 -1 N TYR A 86 O ARG A 95 SHEET 3 AA5 4 LYS A 134 GLY A 140 -1 O TYR A 136 N GLY A 87 SHEET 4 AA5 4 HIS A 152 ARG A 155 -1 O PHE A 154 N TYR A 135 SHEET 1 AA6 2 VAL A 387 PHE A 388 0 SHEET 2 AA6 2 THR A 391 LEU A 392 -1 O THR A 391 N PHE A 388 SSBOND 1 CYS A 217 CYS A 220 1555 1555 2.04 SSBOND 2 CYS A 356 CYS A 437 1555 1555 2.08 SSBOND 3 CYS A 395 CYS A 507 1555 1555 2.05 SSBOND 4 CYS A 422 CYS A 451 1555 1555 2.05 LINK ND2 ASN A 115 C1 NAG B 1 1555 1555 1.42 LINK ND2 ASN A 180 C1 NAG C 1 1555 1555 1.41 LINK ND2 ASN A 211 C1 NAG A 607 1555 1555 1.40 LINK ND2AASN A 267 C1 NAG A 608 1555 1555 1.49 LINK ND2 ASN A 389 C1 NAG A 609 1555 1555 1.44 LINK ND2 ASN A 440 C1 NAG A 610 1555 1555 1.36 LINK ND2 ASN A 475 C1 NAG A 611 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.53 LINK OD2 ASP A 174 FE FE A 601 1555 1555 1.90 LINK OD2 ASP A 201 FE FE A 601 1555 1555 2.35 LINK OD2 ASP A 201 FE FE A 602 1555 1555 2.21 LINK OH TYR A 204 FE FE A 601 1555 1555 1.88 LINK OD1 ASN A 258 FE FE A 602 1555 1555 2.13 LINK NE2 HIS A 340 FE FE A 602 1555 1555 2.12 LINK ND1 HIS A 377 FE FE A 602 1555 1555 2.13 LINK NE2 HIS A 379 FE FE A 601 1555 1555 2.42 LINK FE FE A 601 O1 PO4 A 612 1555 1555 2.27 LINK FE FE A 601 O HOH A 709 1555 1555 2.13 LINK FE FE A 602 O2 PO4 A 612 1555 1555 2.45 LINK FE FE A 602 O HOH A 709 1555 1555 2.24 CRYST1 126.730 126.730 107.040 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007891 0.004556 0.000000 0.00000 SCALE2 0.000000 0.009112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009342 0.00000