data_6GK3 # _entry.id 6GK3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GK3 pdb_00006gk3 10.2210/pdb6gk3/pdb WWPDB D_1200010086 ? ? EMDB EMD-0014 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-14 2 'Structure model' 1 1 2022-03-30 3 'Structure model' 1 2 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_audit_support 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' em_admin 6 3 'Structure model' pdbx_entry_details 7 3 'Structure model' pdbx_modification_feature 8 3 'Structure model' refine # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_audit_support.funding_organization' 4 3 'Structure model' '_em_admin.last_update' 5 3 'Structure model' '_refine.ls_d_res_high' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6GK3 _pdbx_database_status.recvd_initial_deposition_date 2018-05-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Two protofilament beta-2-microglobulin amyloid fibril' _pdbx_database_related.db_id EMD-0014 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Iadanza, M.G.' 1 ? 'Ranson, N.A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 4517 _citation.page_last 4517 _citation.title 'The structure of a beta2-microglobulin fibril suggests a molecular basis for its amyloid polymorphism.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-018-06761-6 _citation.pdbx_database_id_PubMed 30375379 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Iadanza, M.G.' 1 0000-0001-6152-1844 primary 'Silvers, R.' 2 0000-0003-0197-3878 primary 'Boardman, J.' 3 ? primary 'Smith, H.I.' 4 ? primary 'Karamanos, T.K.' 5 ? primary 'Debelouchina, G.T.' 6 0000-0001-6775-9415 primary 'Su, Y.' 7 0000-0001-5063-3218 primary 'Griffin, R.G.' 8 0000-0003-1589-832X primary 'Ranson, N.A.' 9 0000-0002-3640-5275 primary 'Radford, S.E.' 10 0000-0002-3079-8039 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Beta-2-microglobulin _entity.formula_weight 7635.446 _entity.pdbx_number_of_molecules 8 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code FLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV _entity_poly.pdbx_seq_one_letter_code_can FLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 LEU n 1 3 ASN n 1 4 CYS n 1 5 TYR n 1 6 VAL n 1 7 SER n 1 8 GLY n 1 9 PHE n 1 10 HIS n 1 11 PRO n 1 12 SER n 1 13 ASP n 1 14 ILE n 1 15 GLU n 1 16 VAL n 1 17 ASP n 1 18 LEU n 1 19 LEU n 1 20 LYS n 1 21 ASN n 1 22 GLY n 1 23 GLU n 1 24 ARG n 1 25 ILE n 1 26 GLU n 1 27 LYS n 1 28 VAL n 1 29 GLU n 1 30 HIS n 1 31 SER n 1 32 ASP n 1 33 LEU n 1 34 SER n 1 35 PHE n 1 36 SER n 1 37 LYS n 1 38 ASP n 1 39 TRP n 1 40 SER n 1 41 PHE n 1 42 TYR n 1 43 LEU n 1 44 LEU n 1 45 TYR n 1 46 TYR n 1 47 THR n 1 48 GLU n 1 49 PHE n 1 50 THR n 1 51 PRO n 1 52 THR n 1 53 GLU n 1 54 LYS n 1 55 ASP n 1 56 GLU n 1 57 TYR n 1 58 ALA n 1 59 CYS n 1 60 ARG n 1 61 VAL n 1 62 ASN n 1 63 HIS n 1 64 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 64 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'B2M, CDABP0092, HDCMA22P' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 22 22 PHE PHE A . n A 1 2 LEU 2 23 23 LEU LEU A . n A 1 3 ASN 3 24 24 ASN ASN A . n A 1 4 CYS 4 25 25 CYS CYS A . n A 1 5 TYR 5 26 26 TYR TYR A . n A 1 6 VAL 6 27 27 VAL VAL A . n A 1 7 SER 7 28 28 SER SER A . n A 1 8 GLY 8 29 29 GLY GLY A . n A 1 9 PHE 9 30 30 PHE PHE A . n A 1 10 HIS 10 31 31 HIS HIS A . n A 1 11 PRO 11 32 32 PRO PRO A . n A 1 12 SER 12 33 33 SER SER A . n A 1 13 ASP 13 34 34 ASP ASP A . n A 1 14 ILE 14 35 35 ILE ILE A . n A 1 15 GLU 15 36 36 GLU GLU A . n A 1 16 VAL 16 37 37 VAL VAL A . n A 1 17 ASP 17 38 38 ASP ASP A . n A 1 18 LEU 18 39 39 LEU LEU A . n A 1 19 LEU 19 40 40 LEU LEU A . n A 1 20 LYS 20 41 41 LYS LYS A . n A 1 21 ASN 21 42 42 ASN ASN A . n A 1 22 GLY 22 43 43 GLY GLY A . n A 1 23 GLU 23 44 44 GLU GLU A . n A 1 24 ARG 24 45 45 ARG ARG A . n A 1 25 ILE 25 46 46 ILE ILE A . n A 1 26 GLU 26 47 47 GLU GLU A . n A 1 27 LYS 27 48 48 LYS LYS A . n A 1 28 VAL 28 49 49 VAL VAL A . n A 1 29 GLU 29 50 50 GLU GLU A . n A 1 30 HIS 30 51 51 HIS HIS A . n A 1 31 SER 31 52 52 SER SER A . n A 1 32 ASP 32 53 53 ASP ASP A . n A 1 33 LEU 33 54 54 LEU LEU A . n A 1 34 SER 34 55 55 SER SER A . n A 1 35 PHE 35 56 56 PHE PHE A . n A 1 36 SER 36 57 57 SER SER A . n A 1 37 LYS 37 58 58 LYS LYS A . n A 1 38 ASP 38 59 59 ASP ASP A . n A 1 39 TRP 39 60 60 TRP TRP A . n A 1 40 SER 40 61 61 SER SER A . n A 1 41 PHE 41 62 62 PHE PHE A . n A 1 42 TYR 42 63 63 TYR TYR A . n A 1 43 LEU 43 64 64 LEU LEU A . n A 1 44 LEU 44 65 65 LEU LEU A . n A 1 45 TYR 45 66 66 TYR TYR A . n A 1 46 TYR 46 67 67 TYR TYR A . n A 1 47 THR 47 68 68 THR THR A . n A 1 48 GLU 48 69 69 GLU GLU A . n A 1 49 PHE 49 70 70 PHE PHE A . n A 1 50 THR 50 71 71 THR THR A . n A 1 51 PRO 51 72 72 PRO PRO A . n A 1 52 THR 52 73 73 THR THR A . n A 1 53 GLU 53 74 74 GLU GLU A . n A 1 54 LYS 54 75 75 LYS LYS A . n A 1 55 ASP 55 76 76 ASP ASP A . n A 1 56 GLU 56 77 77 GLU GLU A . n A 1 57 TYR 57 78 78 TYR TYR A . n A 1 58 ALA 58 79 79 ALA ALA A . n A 1 59 CYS 59 80 80 CYS CYS A . n A 1 60 ARG 60 81 81 ARG ARG A . n A 1 61 VAL 61 82 82 VAL VAL A . n A 1 62 ASN 62 83 83 ASN ASN A . n A 1 63 HIS 63 84 84 HIS HIS A . n A 1 64 VAL 64 85 85 VAL VAL A . n B 1 1 PHE 1 22 22 PHE PHE B . n B 1 2 LEU 2 23 23 LEU LEU B . n B 1 3 ASN 3 24 24 ASN ASN B . n B 1 4 CYS 4 25 25 CYS CYS B . n B 1 5 TYR 5 26 26 TYR TYR B . n B 1 6 VAL 6 27 27 VAL VAL B . n B 1 7 SER 7 28 28 SER SER B . n B 1 8 GLY 8 29 29 GLY GLY B . n B 1 9 PHE 9 30 30 PHE PHE B . n B 1 10 HIS 10 31 31 HIS HIS B . n B 1 11 PRO 11 32 32 PRO PRO B . n B 1 12 SER 12 33 33 SER SER B . n B 1 13 ASP 13 34 34 ASP ASP B . n B 1 14 ILE 14 35 35 ILE ILE B . n B 1 15 GLU 15 36 36 GLU GLU B . n B 1 16 VAL 16 37 37 VAL VAL B . n B 1 17 ASP 17 38 38 ASP ASP B . n B 1 18 LEU 18 39 39 LEU LEU B . n B 1 19 LEU 19 40 40 LEU LEU B . n B 1 20 LYS 20 41 41 LYS LYS B . n B 1 21 ASN 21 42 42 ASN ASN B . n B 1 22 GLY 22 43 43 GLY GLY B . n B 1 23 GLU 23 44 44 GLU GLU B . n B 1 24 ARG 24 45 45 ARG ARG B . n B 1 25 ILE 25 46 46 ILE ILE B . n B 1 26 GLU 26 47 47 GLU GLU B . n B 1 27 LYS 27 48 48 LYS LYS B . n B 1 28 VAL 28 49 49 VAL VAL B . n B 1 29 GLU 29 50 50 GLU GLU B . n B 1 30 HIS 30 51 51 HIS HIS B . n B 1 31 SER 31 52 52 SER SER B . n B 1 32 ASP 32 53 53 ASP ASP B . n B 1 33 LEU 33 54 54 LEU LEU B . n B 1 34 SER 34 55 55 SER SER B . n B 1 35 PHE 35 56 56 PHE PHE B . n B 1 36 SER 36 57 57 SER SER B . n B 1 37 LYS 37 58 58 LYS LYS B . n B 1 38 ASP 38 59 59 ASP ASP B . n B 1 39 TRP 39 60 60 TRP TRP B . n B 1 40 SER 40 61 61 SER SER B . n B 1 41 PHE 41 62 62 PHE PHE B . n B 1 42 TYR 42 63 63 TYR TYR B . n B 1 43 LEU 43 64 64 LEU LEU B . n B 1 44 LEU 44 65 65 LEU LEU B . n B 1 45 TYR 45 66 66 TYR TYR B . n B 1 46 TYR 46 67 67 TYR TYR B . n B 1 47 THR 47 68 68 THR THR B . n B 1 48 GLU 48 69 69 GLU GLU B . n B 1 49 PHE 49 70 70 PHE PHE B . n B 1 50 THR 50 71 71 THR THR B . n B 1 51 PRO 51 72 72 PRO PRO B . n B 1 52 THR 52 73 73 THR THR B . n B 1 53 GLU 53 74 74 GLU GLU B . n B 1 54 LYS 54 75 75 LYS LYS B . n B 1 55 ASP 55 76 76 ASP ASP B . n B 1 56 GLU 56 77 77 GLU GLU B . n B 1 57 TYR 57 78 78 TYR TYR B . n B 1 58 ALA 58 79 79 ALA ALA B . n B 1 59 CYS 59 80 80 CYS CYS B . n B 1 60 ARG 60 81 81 ARG ARG B . n B 1 61 VAL 61 82 82 VAL VAL B . n B 1 62 ASN 62 83 83 ASN ASN B . n B 1 63 HIS 63 84 84 HIS HIS B . n B 1 64 VAL 64 85 85 VAL VAL B . n C 1 1 PHE 1 22 22 PHE PHE C . n C 1 2 LEU 2 23 23 LEU LEU C . n C 1 3 ASN 3 24 24 ASN ASN C . n C 1 4 CYS 4 25 25 CYS CYS C . n C 1 5 TYR 5 26 26 TYR TYR C . n C 1 6 VAL 6 27 27 VAL VAL C . n C 1 7 SER 7 28 28 SER SER C . n C 1 8 GLY 8 29 29 GLY GLY C . n C 1 9 PHE 9 30 30 PHE PHE C . n C 1 10 HIS 10 31 31 HIS HIS C . n C 1 11 PRO 11 32 32 PRO PRO C . n C 1 12 SER 12 33 33 SER SER C . n C 1 13 ASP 13 34 34 ASP ASP C . n C 1 14 ILE 14 35 35 ILE ILE C . n C 1 15 GLU 15 36 36 GLU GLU C . n C 1 16 VAL 16 37 37 VAL VAL C . n C 1 17 ASP 17 38 38 ASP ASP C . n C 1 18 LEU 18 39 39 LEU LEU C . n C 1 19 LEU 19 40 40 LEU LEU C . n C 1 20 LYS 20 41 41 LYS LYS C . n C 1 21 ASN 21 42 42 ASN ASN C . n C 1 22 GLY 22 43 43 GLY GLY C . n C 1 23 GLU 23 44 44 GLU GLU C . n C 1 24 ARG 24 45 45 ARG ARG C . n C 1 25 ILE 25 46 46 ILE ILE C . n C 1 26 GLU 26 47 47 GLU GLU C . n C 1 27 LYS 27 48 48 LYS LYS C . n C 1 28 VAL 28 49 49 VAL VAL C . n C 1 29 GLU 29 50 50 GLU GLU C . n C 1 30 HIS 30 51 51 HIS HIS C . n C 1 31 SER 31 52 52 SER SER C . n C 1 32 ASP 32 53 53 ASP ASP C . n C 1 33 LEU 33 54 54 LEU LEU C . n C 1 34 SER 34 55 55 SER SER C . n C 1 35 PHE 35 56 56 PHE PHE C . n C 1 36 SER 36 57 57 SER SER C . n C 1 37 LYS 37 58 58 LYS LYS C . n C 1 38 ASP 38 59 59 ASP ASP C . n C 1 39 TRP 39 60 60 TRP TRP C . n C 1 40 SER 40 61 61 SER SER C . n C 1 41 PHE 41 62 62 PHE PHE C . n C 1 42 TYR 42 63 63 TYR TYR C . n C 1 43 LEU 43 64 64 LEU LEU C . n C 1 44 LEU 44 65 65 LEU LEU C . n C 1 45 TYR 45 66 66 TYR TYR C . n C 1 46 TYR 46 67 67 TYR TYR C . n C 1 47 THR 47 68 68 THR THR C . n C 1 48 GLU 48 69 69 GLU GLU C . n C 1 49 PHE 49 70 70 PHE PHE C . n C 1 50 THR 50 71 71 THR THR C . n C 1 51 PRO 51 72 72 PRO PRO C . n C 1 52 THR 52 73 73 THR THR C . n C 1 53 GLU 53 74 74 GLU GLU C . n C 1 54 LYS 54 75 75 LYS LYS C . n C 1 55 ASP 55 76 76 ASP ASP C . n C 1 56 GLU 56 77 77 GLU GLU C . n C 1 57 TYR 57 78 78 TYR TYR C . n C 1 58 ALA 58 79 79 ALA ALA C . n C 1 59 CYS 59 80 80 CYS CYS C . n C 1 60 ARG 60 81 81 ARG ARG C . n C 1 61 VAL 61 82 82 VAL VAL C . n C 1 62 ASN 62 83 83 ASN ASN C . n C 1 63 HIS 63 84 84 HIS HIS C . n C 1 64 VAL 64 85 85 VAL VAL C . n D 1 1 PHE 1 22 22 PHE PHE D . n D 1 2 LEU 2 23 23 LEU LEU D . n D 1 3 ASN 3 24 24 ASN ASN D . n D 1 4 CYS 4 25 25 CYS CYS D . n D 1 5 TYR 5 26 26 TYR TYR D . n D 1 6 VAL 6 27 27 VAL VAL D . n D 1 7 SER 7 28 28 SER SER D . n D 1 8 GLY 8 29 29 GLY GLY D . n D 1 9 PHE 9 30 30 PHE PHE D . n D 1 10 HIS 10 31 31 HIS HIS D . n D 1 11 PRO 11 32 32 PRO PRO D . n D 1 12 SER 12 33 33 SER SER D . n D 1 13 ASP 13 34 34 ASP ASP D . n D 1 14 ILE 14 35 35 ILE ILE D . n D 1 15 GLU 15 36 36 GLU GLU D . n D 1 16 VAL 16 37 37 VAL VAL D . n D 1 17 ASP 17 38 38 ASP ASP D . n D 1 18 LEU 18 39 39 LEU LEU D . n D 1 19 LEU 19 40 40 LEU LEU D . n D 1 20 LYS 20 41 41 LYS LYS D . n D 1 21 ASN 21 42 42 ASN ASN D . n D 1 22 GLY 22 43 43 GLY GLY D . n D 1 23 GLU 23 44 44 GLU GLU D . n D 1 24 ARG 24 45 45 ARG ARG D . n D 1 25 ILE 25 46 46 ILE ILE D . n D 1 26 GLU 26 47 47 GLU GLU D . n D 1 27 LYS 27 48 48 LYS LYS D . n D 1 28 VAL 28 49 49 VAL VAL D . n D 1 29 GLU 29 50 50 GLU GLU D . n D 1 30 HIS 30 51 51 HIS HIS D . n D 1 31 SER 31 52 52 SER SER D . n D 1 32 ASP 32 53 53 ASP ASP D . n D 1 33 LEU 33 54 54 LEU LEU D . n D 1 34 SER 34 55 55 SER SER D . n D 1 35 PHE 35 56 56 PHE PHE D . n D 1 36 SER 36 57 57 SER SER D . n D 1 37 LYS 37 58 58 LYS LYS D . n D 1 38 ASP 38 59 59 ASP ASP D . n D 1 39 TRP 39 60 60 TRP TRP D . n D 1 40 SER 40 61 61 SER SER D . n D 1 41 PHE 41 62 62 PHE PHE D . n D 1 42 TYR 42 63 63 TYR TYR D . n D 1 43 LEU 43 64 64 LEU LEU D . n D 1 44 LEU 44 65 65 LEU LEU D . n D 1 45 TYR 45 66 66 TYR TYR D . n D 1 46 TYR 46 67 67 TYR TYR D . n D 1 47 THR 47 68 68 THR THR D . n D 1 48 GLU 48 69 69 GLU GLU D . n D 1 49 PHE 49 70 70 PHE PHE D . n D 1 50 THR 50 71 71 THR THR D . n D 1 51 PRO 51 72 72 PRO PRO D . n D 1 52 THR 52 73 73 THR THR D . n D 1 53 GLU 53 74 74 GLU GLU D . n D 1 54 LYS 54 75 75 LYS LYS D . n D 1 55 ASP 55 76 76 ASP ASP D . n D 1 56 GLU 56 77 77 GLU GLU D . n D 1 57 TYR 57 78 78 TYR TYR D . n D 1 58 ALA 58 79 79 ALA ALA D . n D 1 59 CYS 59 80 80 CYS CYS D . n D 1 60 ARG 60 81 81 ARG ARG D . n D 1 61 VAL 61 82 82 VAL VAL D . n D 1 62 ASN 62 83 83 ASN ASN D . n D 1 63 HIS 63 84 84 HIS HIS D . n D 1 64 VAL 64 85 85 VAL VAL D . n E 1 1 PHE 1 22 22 PHE PHE E . n E 1 2 LEU 2 23 23 LEU LEU E . n E 1 3 ASN 3 24 24 ASN ASN E . n E 1 4 CYS 4 25 25 CYS CYS E . n E 1 5 TYR 5 26 26 TYR TYR E . n E 1 6 VAL 6 27 27 VAL VAL E . n E 1 7 SER 7 28 28 SER SER E . n E 1 8 GLY 8 29 29 GLY GLY E . n E 1 9 PHE 9 30 30 PHE PHE E . n E 1 10 HIS 10 31 31 HIS HIS E . n E 1 11 PRO 11 32 32 PRO PRO E . n E 1 12 SER 12 33 33 SER SER E . n E 1 13 ASP 13 34 34 ASP ASP E . n E 1 14 ILE 14 35 35 ILE ILE E . n E 1 15 GLU 15 36 36 GLU GLU E . n E 1 16 VAL 16 37 37 VAL VAL E . n E 1 17 ASP 17 38 38 ASP ASP E . n E 1 18 LEU 18 39 39 LEU LEU E . n E 1 19 LEU 19 40 40 LEU LEU E . n E 1 20 LYS 20 41 41 LYS LYS E . n E 1 21 ASN 21 42 42 ASN ASN E . n E 1 22 GLY 22 43 43 GLY GLY E . n E 1 23 GLU 23 44 44 GLU GLU E . n E 1 24 ARG 24 45 45 ARG ARG E . n E 1 25 ILE 25 46 46 ILE ILE E . n E 1 26 GLU 26 47 47 GLU GLU E . n E 1 27 LYS 27 48 48 LYS LYS E . n E 1 28 VAL 28 49 49 VAL VAL E . n E 1 29 GLU 29 50 50 GLU GLU E . n E 1 30 HIS 30 51 51 HIS HIS E . n E 1 31 SER 31 52 52 SER SER E . n E 1 32 ASP 32 53 53 ASP ASP E . n E 1 33 LEU 33 54 54 LEU LEU E . n E 1 34 SER 34 55 55 SER SER E . n E 1 35 PHE 35 56 56 PHE PHE E . n E 1 36 SER 36 57 57 SER SER E . n E 1 37 LYS 37 58 58 LYS LYS E . n E 1 38 ASP 38 59 59 ASP ASP E . n E 1 39 TRP 39 60 60 TRP TRP E . n E 1 40 SER 40 61 61 SER SER E . n E 1 41 PHE 41 62 62 PHE PHE E . n E 1 42 TYR 42 63 63 TYR TYR E . n E 1 43 LEU 43 64 64 LEU LEU E . n E 1 44 LEU 44 65 65 LEU LEU E . n E 1 45 TYR 45 66 66 TYR TYR E . n E 1 46 TYR 46 67 67 TYR TYR E . n E 1 47 THR 47 68 68 THR THR E . n E 1 48 GLU 48 69 69 GLU GLU E . n E 1 49 PHE 49 70 70 PHE PHE E . n E 1 50 THR 50 71 71 THR THR E . n E 1 51 PRO 51 72 72 PRO PRO E . n E 1 52 THR 52 73 73 THR THR E . n E 1 53 GLU 53 74 74 GLU GLU E . n E 1 54 LYS 54 75 75 LYS LYS E . n E 1 55 ASP 55 76 76 ASP ASP E . n E 1 56 GLU 56 77 77 GLU GLU E . n E 1 57 TYR 57 78 78 TYR TYR E . n E 1 58 ALA 58 79 79 ALA ALA E . n E 1 59 CYS 59 80 80 CYS CYS E . n E 1 60 ARG 60 81 81 ARG ARG E . n E 1 61 VAL 61 82 82 VAL VAL E . n E 1 62 ASN 62 83 83 ASN ASN E . n E 1 63 HIS 63 84 84 HIS HIS E . n E 1 64 VAL 64 85 85 VAL VAL E . n F 1 1 PHE 1 22 22 PHE PHE F . n F 1 2 LEU 2 23 23 LEU LEU F . n F 1 3 ASN 3 24 24 ASN ASN F . n F 1 4 CYS 4 25 25 CYS CYS F . n F 1 5 TYR 5 26 26 TYR TYR F . n F 1 6 VAL 6 27 27 VAL VAL F . n F 1 7 SER 7 28 28 SER SER F . n F 1 8 GLY 8 29 29 GLY GLY F . n F 1 9 PHE 9 30 30 PHE PHE F . n F 1 10 HIS 10 31 31 HIS HIS F . n F 1 11 PRO 11 32 32 PRO PRO F . n F 1 12 SER 12 33 33 SER SER F . n F 1 13 ASP 13 34 34 ASP ASP F . n F 1 14 ILE 14 35 35 ILE ILE F . n F 1 15 GLU 15 36 36 GLU GLU F . n F 1 16 VAL 16 37 37 VAL VAL F . n F 1 17 ASP 17 38 38 ASP ASP F . n F 1 18 LEU 18 39 39 LEU LEU F . n F 1 19 LEU 19 40 40 LEU LEU F . n F 1 20 LYS 20 41 41 LYS LYS F . n F 1 21 ASN 21 42 42 ASN ASN F . n F 1 22 GLY 22 43 43 GLY GLY F . n F 1 23 GLU 23 44 44 GLU GLU F . n F 1 24 ARG 24 45 45 ARG ARG F . n F 1 25 ILE 25 46 46 ILE ILE F . n F 1 26 GLU 26 47 47 GLU GLU F . n F 1 27 LYS 27 48 48 LYS LYS F . n F 1 28 VAL 28 49 49 VAL VAL F . n F 1 29 GLU 29 50 50 GLU GLU F . n F 1 30 HIS 30 51 51 HIS HIS F . n F 1 31 SER 31 52 52 SER SER F . n F 1 32 ASP 32 53 53 ASP ASP F . n F 1 33 LEU 33 54 54 LEU LEU F . n F 1 34 SER 34 55 55 SER SER F . n F 1 35 PHE 35 56 56 PHE PHE F . n F 1 36 SER 36 57 57 SER SER F . n F 1 37 LYS 37 58 58 LYS LYS F . n F 1 38 ASP 38 59 59 ASP ASP F . n F 1 39 TRP 39 60 60 TRP TRP F . n F 1 40 SER 40 61 61 SER SER F . n F 1 41 PHE 41 62 62 PHE PHE F . n F 1 42 TYR 42 63 63 TYR TYR F . n F 1 43 LEU 43 64 64 LEU LEU F . n F 1 44 LEU 44 65 65 LEU LEU F . n F 1 45 TYR 45 66 66 TYR TYR F . n F 1 46 TYR 46 67 67 TYR TYR F . n F 1 47 THR 47 68 68 THR THR F . n F 1 48 GLU 48 69 69 GLU GLU F . n F 1 49 PHE 49 70 70 PHE PHE F . n F 1 50 THR 50 71 71 THR THR F . n F 1 51 PRO 51 72 72 PRO PRO F . n F 1 52 THR 52 73 73 THR THR F . n F 1 53 GLU 53 74 74 GLU GLU F . n F 1 54 LYS 54 75 75 LYS LYS F . n F 1 55 ASP 55 76 76 ASP ASP F . n F 1 56 GLU 56 77 77 GLU GLU F . n F 1 57 TYR 57 78 78 TYR TYR F . n F 1 58 ALA 58 79 79 ALA ALA F . n F 1 59 CYS 59 80 80 CYS CYS F . n F 1 60 ARG 60 81 81 ARG ARG F . n F 1 61 VAL 61 82 82 VAL VAL F . n F 1 62 ASN 62 83 83 ASN ASN F . n F 1 63 HIS 63 84 84 HIS HIS F . n F 1 64 VAL 64 85 85 VAL VAL F . n G 1 1 PHE 1 22 22 PHE PHE G . n G 1 2 LEU 2 23 23 LEU LEU G . n G 1 3 ASN 3 24 24 ASN ASN G . n G 1 4 CYS 4 25 25 CYS CYS G . n G 1 5 TYR 5 26 26 TYR TYR G . n G 1 6 VAL 6 27 27 VAL VAL G . n G 1 7 SER 7 28 28 SER SER G . n G 1 8 GLY 8 29 29 GLY GLY G . n G 1 9 PHE 9 30 30 PHE PHE G . n G 1 10 HIS 10 31 31 HIS HIS G . n G 1 11 PRO 11 32 32 PRO PRO G . n G 1 12 SER 12 33 33 SER SER G . n G 1 13 ASP 13 34 34 ASP ASP G . n G 1 14 ILE 14 35 35 ILE ILE G . n G 1 15 GLU 15 36 36 GLU GLU G . n G 1 16 VAL 16 37 37 VAL VAL G . n G 1 17 ASP 17 38 38 ASP ASP G . n G 1 18 LEU 18 39 39 LEU LEU G . n G 1 19 LEU 19 40 40 LEU LEU G . n G 1 20 LYS 20 41 41 LYS LYS G . n G 1 21 ASN 21 42 42 ASN ASN G . n G 1 22 GLY 22 43 43 GLY GLY G . n G 1 23 GLU 23 44 44 GLU GLU G . n G 1 24 ARG 24 45 45 ARG ARG G . n G 1 25 ILE 25 46 46 ILE ILE G . n G 1 26 GLU 26 47 47 GLU GLU G . n G 1 27 LYS 27 48 48 LYS LYS G . n G 1 28 VAL 28 49 49 VAL VAL G . n G 1 29 GLU 29 50 50 GLU GLU G . n G 1 30 HIS 30 51 51 HIS HIS G . n G 1 31 SER 31 52 52 SER SER G . n G 1 32 ASP 32 53 53 ASP ASP G . n G 1 33 LEU 33 54 54 LEU LEU G . n G 1 34 SER 34 55 55 SER SER G . n G 1 35 PHE 35 56 56 PHE PHE G . n G 1 36 SER 36 57 57 SER SER G . n G 1 37 LYS 37 58 58 LYS LYS G . n G 1 38 ASP 38 59 59 ASP ASP G . n G 1 39 TRP 39 60 60 TRP TRP G . n G 1 40 SER 40 61 61 SER SER G . n G 1 41 PHE 41 62 62 PHE PHE G . n G 1 42 TYR 42 63 63 TYR TYR G . n G 1 43 LEU 43 64 64 LEU LEU G . n G 1 44 LEU 44 65 65 LEU LEU G . n G 1 45 TYR 45 66 66 TYR TYR G . n G 1 46 TYR 46 67 67 TYR TYR G . n G 1 47 THR 47 68 68 THR THR G . n G 1 48 GLU 48 69 69 GLU GLU G . n G 1 49 PHE 49 70 70 PHE PHE G . n G 1 50 THR 50 71 71 THR THR G . n G 1 51 PRO 51 72 72 PRO PRO G . n G 1 52 THR 52 73 73 THR THR G . n G 1 53 GLU 53 74 74 GLU GLU G . n G 1 54 LYS 54 75 75 LYS LYS G . n G 1 55 ASP 55 76 76 ASP ASP G . n G 1 56 GLU 56 77 77 GLU GLU G . n G 1 57 TYR 57 78 78 TYR TYR G . n G 1 58 ALA 58 79 79 ALA ALA G . n G 1 59 CYS 59 80 80 CYS CYS G . n G 1 60 ARG 60 81 81 ARG ARG G . n G 1 61 VAL 61 82 82 VAL VAL G . n G 1 62 ASN 62 83 83 ASN ASN G . n G 1 63 HIS 63 84 84 HIS HIS G . n G 1 64 VAL 64 85 85 VAL VAL G . n H 1 1 PHE 1 22 22 PHE PHE H . n H 1 2 LEU 2 23 23 LEU LEU H . n H 1 3 ASN 3 24 24 ASN ASN H . n H 1 4 CYS 4 25 25 CYS CYS H . n H 1 5 TYR 5 26 26 TYR TYR H . n H 1 6 VAL 6 27 27 VAL VAL H . n H 1 7 SER 7 28 28 SER SER H . n H 1 8 GLY 8 29 29 GLY GLY H . n H 1 9 PHE 9 30 30 PHE PHE H . n H 1 10 HIS 10 31 31 HIS HIS H . n H 1 11 PRO 11 32 32 PRO PRO H . n H 1 12 SER 12 33 33 SER SER H . n H 1 13 ASP 13 34 34 ASP ASP H . n H 1 14 ILE 14 35 35 ILE ILE H . n H 1 15 GLU 15 36 36 GLU GLU H . n H 1 16 VAL 16 37 37 VAL VAL H . n H 1 17 ASP 17 38 38 ASP ASP H . n H 1 18 LEU 18 39 39 LEU LEU H . n H 1 19 LEU 19 40 40 LEU LEU H . n H 1 20 LYS 20 41 41 LYS LYS H . n H 1 21 ASN 21 42 42 ASN ASN H . n H 1 22 GLY 22 43 43 GLY GLY H . n H 1 23 GLU 23 44 44 GLU GLU H . n H 1 24 ARG 24 45 45 ARG ARG H . n H 1 25 ILE 25 46 46 ILE ILE H . n H 1 26 GLU 26 47 47 GLU GLU H . n H 1 27 LYS 27 48 48 LYS LYS H . n H 1 28 VAL 28 49 49 VAL VAL H . n H 1 29 GLU 29 50 50 GLU GLU H . n H 1 30 HIS 30 51 51 HIS HIS H . n H 1 31 SER 31 52 52 SER SER H . n H 1 32 ASP 32 53 53 ASP ASP H . n H 1 33 LEU 33 54 54 LEU LEU H . n H 1 34 SER 34 55 55 SER SER H . n H 1 35 PHE 35 56 56 PHE PHE H . n H 1 36 SER 36 57 57 SER SER H . n H 1 37 LYS 37 58 58 LYS LYS H . n H 1 38 ASP 38 59 59 ASP ASP H . n H 1 39 TRP 39 60 60 TRP TRP H . n H 1 40 SER 40 61 61 SER SER H . n H 1 41 PHE 41 62 62 PHE PHE H . n H 1 42 TYR 42 63 63 TYR TYR H . n H 1 43 LEU 43 64 64 LEU LEU H . n H 1 44 LEU 44 65 65 LEU LEU H . n H 1 45 TYR 45 66 66 TYR TYR H . n H 1 46 TYR 46 67 67 TYR TYR H . n H 1 47 THR 47 68 68 THR THR H . n H 1 48 GLU 48 69 69 GLU GLU H . n H 1 49 PHE 49 70 70 PHE PHE H . n H 1 50 THR 50 71 71 THR THR H . n H 1 51 PRO 51 72 72 PRO PRO H . n H 1 52 THR 52 73 73 THR THR H . n H 1 53 GLU 53 74 74 GLU GLU H . n H 1 54 LYS 54 75 75 LYS LYS H . n H 1 55 ASP 55 76 76 ASP ASP H . n H 1 56 GLU 56 77 77 GLU GLU H . n H 1 57 TYR 57 78 78 TYR TYR H . n H 1 58 ALA 58 79 79 ALA ALA H . n H 1 59 CYS 59 80 80 CYS CYS H . n H 1 60 ARG 60 81 81 ARG ARG H . n H 1 61 VAL 61 82 82 VAL VAL H . n H 1 62 ASN 62 83 83 ASN ASN H . n H 1 63 HIS 63 84 84 HIS HIS H . n H 1 64 VAL 64 85 85 VAL VAL H . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GK3 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6GK3 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.975 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 6GK3 _struct.title 'Two protofilament beta-2-microglobulin amyloid fibril' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GK3 _struct_keywords.text 'amyloid, b2m, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B2MG_HUMAN _struct_ref.pdbx_db_accession P61769 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code FLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV _struct_ref.pdbx_align_begin 42 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6GK3 A 1 ? 64 ? P61769 42 ? 105 ? 22 85 2 1 6GK3 B 1 ? 64 ? P61769 42 ? 105 ? 22 85 3 1 6GK3 C 1 ? 64 ? P61769 42 ? 105 ? 22 85 4 1 6GK3 D 1 ? 64 ? P61769 42 ? 105 ? 22 85 5 1 6GK3 E 1 ? 64 ? P61769 42 ? 105 ? 22 85 6 1 6GK3 F 1 ? 64 ? P61769 42 ? 105 ? 22 85 7 1 6GK3 G 1 ? 64 ? P61769 42 ? 105 ? 22 85 8 1 6GK3 H 1 ? 64 ? P61769 42 ? 105 ? 22 85 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 35320 ? 1 MORE -152 ? 1 'SSA (A^2)' 25000 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ;Negative stain EM SEM ; # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 59 SG ? ? A CYS 25 A CYS 80 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf2 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 59 SG ? ? B CYS 25 B CYS 80 1_555 ? ? ? ? ? ? ? 2.018 ? ? disulf3 disulf ? ? C CYS 4 SG ? ? ? 1_555 C CYS 59 SG ? ? C CYS 25 C CYS 80 1_555 ? ? ? ? ? ? ? 2.016 ? ? disulf4 disulf ? ? D CYS 4 SG ? ? ? 1_555 D CYS 59 SG ? ? D CYS 25 D CYS 80 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf5 disulf ? ? E CYS 4 SG ? ? ? 1_555 E CYS 59 SG ? ? E CYS 25 E CYS 80 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf6 disulf ? ? F CYS 4 SG ? ? ? 1_555 F CYS 59 SG ? ? F CYS 25 F CYS 80 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf7 disulf ? ? G CYS 4 SG ? ? ? 1_555 G CYS 59 SG ? ? G CYS 25 G CYS 80 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf8 disulf ? ? H CYS 4 SG ? ? ? 1_555 H CYS 59 SG ? ? H CYS 25 H CYS 80 1_555 ? ? ? ? ? ? ? 2.018 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 4 ? CYS A 59 ? CYS A 25 ? 1_555 CYS A 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 4 ? CYS B 59 ? CYS B 25 ? 1_555 CYS B 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS C 4 ? CYS C 59 ? CYS C 25 ? 1_555 CYS C 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS D 4 ? CYS D 59 ? CYS D 25 ? 1_555 CYS D 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS E 4 ? CYS E 59 ? CYS E 25 ? 1_555 CYS E 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS F 4 ? CYS F 59 ? CYS F 25 ? 1_555 CYS F 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS G 4 ? CYS G 59 ? CYS G 25 ? 1_555 CYS G 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS H 4 ? CYS H 59 ? CYS H 25 ? 1_555 CYS H 80 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? AA7 ? 4 ? AA8 ? 4 ? AA9 ? 4 ? AB1 ? 4 ? AB2 ? 4 ? AB3 ? 4 ? AB4 ? 4 ? AB5 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB1 3 4 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB2 3 4 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB3 3 4 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB4 3 4 ? parallel AB5 1 2 ? parallel AB5 2 3 ? parallel AB5 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 3 ? VAL A 6 ? ASN A 24 VAL A 27 AA1 2 ASN B 3 ? VAL B 6 ? ASN B 24 VAL B 27 AA1 3 ASN C 3 ? VAL C 6 ? ASN C 24 VAL C 27 AA1 4 ASN D 3 ? VAL D 6 ? ASN D 24 VAL D 27 AA2 1 ILE A 14 ? LEU A 18 ? ILE A 35 LEU A 39 AA2 2 ILE B 14 ? LEU B 18 ? ILE B 35 LEU B 39 AA2 3 ILE C 14 ? LEU C 18 ? ILE C 35 LEU C 39 AA2 4 ILE D 14 ? LEU D 18 ? ILE D 35 LEU D 39 AA3 1 ARG A 24 ? GLU A 29 ? ARG A 45 GLU A 50 AA3 2 ARG B 24 ? GLU B 29 ? ARG B 45 GLU B 50 AA3 3 ARG C 24 ? GLU C 29 ? ARG C 45 GLU C 50 AA3 4 ARG D 24 ? GLU D 29 ? ARG D 45 GLU D 50 AA4 1 ASP A 32 ? SER A 34 ? ASP A 53 SER A 55 AA4 2 ASP B 32 ? SER B 34 ? ASP B 53 SER B 55 AA4 3 ASP C 32 ? SER C 34 ? ASP C 53 SER C 55 AA4 4 ASP D 32 ? SER D 34 ? ASP D 53 SER D 55 AA5 1 ASP A 38 ? TRP A 39 ? ASP A 59 TRP A 60 AA5 2 ASP B 38 ? TRP B 39 ? ASP B 59 TRP B 60 AA5 3 ASP C 38 ? TRP C 39 ? ASP C 59 TRP C 60 AA5 4 ASP D 38 ? TRP D 39 ? ASP D 59 TRP D 60 AA6 1 LEU A 44 ? GLU A 48 ? LEU A 65 GLU A 69 AA6 2 LEU B 44 ? GLU B 48 ? LEU B 65 GLU B 69 AA6 3 LEU C 44 ? GLU C 48 ? LEU C 65 GLU C 69 AA6 4 LEU D 44 ? GLU D 48 ? LEU D 65 GLU D 69 AA7 1 ASP A 55 ? ASN A 62 ? ASP A 76 ASN A 83 AA7 2 ASP B 55 ? ASN B 62 ? ASP B 76 ASN B 83 AA7 3 ASP C 55 ? ASN C 62 ? ASP C 76 ASN C 83 AA7 4 ASP D 55 ? ASN D 62 ? ASP D 76 ASN D 83 AA8 1 ASN E 3 ? VAL E 6 ? ASN E 24 VAL E 27 AA8 2 ASN F 3 ? VAL F 6 ? ASN F 24 VAL F 27 AA8 3 ASN G 3 ? VAL G 6 ? ASN G 24 VAL G 27 AA8 4 ASN H 3 ? VAL H 6 ? ASN H 24 VAL H 27 AA9 1 ILE E 14 ? LEU E 18 ? ILE E 35 LEU E 39 AA9 2 ILE F 14 ? LEU F 18 ? ILE F 35 LEU F 39 AA9 3 ILE G 14 ? LEU G 18 ? ILE G 35 LEU G 39 AA9 4 ILE H 14 ? LEU H 18 ? ILE H 35 LEU H 39 AB1 1 ARG E 24 ? GLU E 29 ? ARG E 45 GLU E 50 AB1 2 ARG F 24 ? GLU F 29 ? ARG F 45 GLU F 50 AB1 3 ARG G 24 ? GLU G 29 ? ARG G 45 GLU G 50 AB1 4 ARG H 24 ? GLU H 29 ? ARG H 45 GLU H 50 AB2 1 ASP E 32 ? SER E 34 ? ASP E 53 SER E 55 AB2 2 ASP F 32 ? SER F 34 ? ASP F 53 SER F 55 AB2 3 ASP G 32 ? SER G 34 ? ASP G 53 SER G 55 AB2 4 ASP H 32 ? SER H 34 ? ASP H 53 SER H 55 AB3 1 ASP E 38 ? TRP E 39 ? ASP E 59 TRP E 60 AB3 2 ASP F 38 ? TRP F 39 ? ASP F 59 TRP F 60 AB3 3 ASP G 38 ? TRP G 39 ? ASP G 59 TRP G 60 AB3 4 ASP H 38 ? TRP H 39 ? ASP H 59 TRP H 60 AB4 1 LEU E 44 ? GLU E 48 ? LEU E 65 GLU E 69 AB4 2 LEU F 44 ? GLU F 48 ? LEU F 65 GLU F 69 AB4 3 LEU G 44 ? GLU G 48 ? LEU G 65 GLU G 69 AB4 4 LEU H 44 ? GLU H 48 ? LEU H 65 GLU H 69 AB5 1 ASP E 55 ? ASN E 62 ? ASP E 76 ASN E 83 AB5 2 ASP F 55 ? ASN F 62 ? ASP F 76 ASN F 83 AB5 3 ASP G 55 ? ASN G 62 ? ASP G 76 ASN G 83 AB5 4 ASP H 55 ? ASN H 62 ? ASP H 76 ASN H 83 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N CYS A 4 ? N CYS A 25 O ASN B 3 ? O ASN B 24 AA1 2 3 N CYS B 4 ? N CYS B 25 O ASN C 3 ? O ASN C 24 AA1 3 4 N CYS C 4 ? N CYS C 25 O ASN D 3 ? O ASN D 24 AA2 1 2 N GLU A 15 ? N GLU A 36 O VAL B 16 ? O VAL B 37 AA2 2 3 N GLU B 15 ? N GLU B 36 O VAL C 16 ? O VAL C 37 AA2 3 4 N GLU C 15 ? N GLU C 36 O VAL D 16 ? O VAL D 37 AA3 1 2 N ARG A 24 ? N ARG A 45 O ILE B 25 ? O ILE B 46 AA3 2 3 N ARG B 24 ? N ARG B 45 O ILE C 25 ? O ILE C 46 AA3 3 4 N ARG C 24 ? N ARG C 45 O ILE D 25 ? O ILE D 46 AA4 1 2 N SER A 34 ? N SER A 55 O LEU B 33 ? O LEU B 54 AA4 2 3 N SER B 34 ? N SER B 55 O LEU C 33 ? O LEU C 54 AA4 3 4 N SER C 34 ? N SER C 55 O LEU D 33 ? O LEU D 54 AA5 1 2 N ASP A 38 ? N ASP A 59 O TRP B 39 ? O TRP B 60 AA5 2 3 N ASP B 38 ? N ASP B 59 O TRP C 39 ? O TRP C 60 AA5 3 4 N ASP C 38 ? N ASP C 59 O TRP D 39 ? O TRP D 60 AA6 1 2 N TYR A 45 ? N TYR A 66 O LEU B 44 ? O LEU B 65 AA6 2 3 N TYR B 45 ? N TYR B 66 O LEU C 44 ? O LEU C 65 AA6 3 4 N TYR C 45 ? N TYR C 66 O LEU D 44 ? O LEU D 65 AA7 1 2 N ALA A 58 ? N ALA A 79 O CYS B 59 ? O CYS B 80 AA7 2 3 N ALA B 58 ? N ALA B 79 O CYS C 59 ? O CYS C 80 AA7 3 4 N ALA C 58 ? N ALA C 79 O CYS D 59 ? O CYS D 80 AA8 1 2 N CYS E 4 ? N CYS E 25 O ASN F 3 ? O ASN F 24 AA8 2 3 N CYS F 4 ? N CYS F 25 O ASN G 3 ? O ASN G 24 AA8 3 4 N CYS G 4 ? N CYS G 25 O ASN H 3 ? O ASN H 24 AA9 1 2 N GLU E 15 ? N GLU E 36 O VAL F 16 ? O VAL F 37 AA9 2 3 N GLU F 15 ? N GLU F 36 O VAL G 16 ? O VAL G 37 AA9 3 4 N GLU G 15 ? N GLU G 36 O VAL H 16 ? O VAL H 37 AB1 1 2 N ARG E 24 ? N ARG E 45 O ILE F 25 ? O ILE F 46 AB1 2 3 N ARG F 24 ? N ARG F 45 O ILE G 25 ? O ILE G 46 AB1 3 4 N ARG G 24 ? N ARG G 45 O ILE H 25 ? O ILE H 46 AB2 1 2 N SER E 34 ? N SER E 55 O LEU F 33 ? O LEU F 54 AB2 2 3 N SER F 34 ? N SER F 55 O LEU G 33 ? O LEU G 54 AB2 3 4 N SER G 34 ? N SER G 55 O LEU H 33 ? O LEU H 54 AB3 1 2 N ASP E 38 ? N ASP E 59 O TRP F 39 ? O TRP F 60 AB3 2 3 N ASP F 38 ? N ASP F 59 O TRP G 39 ? O TRP G 60 AB3 3 4 N ASP G 38 ? N ASP G 59 O TRP H 39 ? O TRP H 60 AB4 1 2 N TYR E 45 ? N TYR E 66 O LEU F 44 ? O LEU F 65 AB4 2 3 N TYR F 45 ? N TYR F 66 O LEU G 44 ? O LEU G 65 AB4 3 4 N TYR G 45 ? N TYR G 66 O LEU H 44 ? O LEU H 65 AB5 1 2 N ALA E 58 ? N ALA E 79 O CYS F 59 ? O CYS F 80 AB5 2 3 N ALA F 58 ? N ALA F 79 O CYS G 59 ? O CYS G 80 AB5 3 4 N ALA G 58 ? N ALA G 79 O CYS H 59 ? O CYS H 80 # _pdbx_entry_details.entry_id 6GK3 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CD2 B TYR 67 ? ? CE1 C TYR 67 ? ? 2.08 2 1 CE2 A TYR 67 ? ? OE2 E GLU 69 ? ? 2.08 3 1 CD2 F TYR 67 ? ? CE1 G TYR 67 ? ? 2.08 4 1 CD2 B TYR 63 ? ? CE1 C TYR 63 ? ? 2.09 5 1 CD2 F TYR 63 ? ? CE1 G TYR 63 ? ? 2.09 6 1 OE2 A GLU 69 ? ? CE2 E TYR 67 ? ? 2.10 7 1 CD2 G TYR 67 ? ? CE1 H TYR 67 ? ? 2.10 8 1 CD2 C TYR 67 ? ? CE1 D TYR 67 ? ? 2.10 9 1 CD2 A TYR 67 ? ? CE1 B TYR 67 ? ? 2.10 10 1 CD2 E TYR 67 ? ? CE1 F TYR 67 ? ? 2.10 11 1 CD2 A TYR 63 ? ? CE1 B TYR 63 ? ? 2.18 12 1 CD2 E TYR 63 ? ? CE1 F TYR 63 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 67 ? ? 47.94 73.07 2 1 PRO A 72 ? ? -49.66 156.78 3 1 TYR B 67 ? ? 47.98 73.34 4 1 PRO B 72 ? ? -49.60 156.85 5 1 TYR C 67 ? ? 48.35 73.43 6 1 PRO C 72 ? ? -49.63 156.74 7 1 TYR D 67 ? ? 48.06 73.61 8 1 PRO D 72 ? ? -49.57 156.79 9 1 TYR E 67 ? ? 47.92 73.08 10 1 PRO E 72 ? ? -49.68 156.77 11 1 TYR F 67 ? ? 47.95 73.34 12 1 PRO F 72 ? ? -49.67 156.86 13 1 TYR G 67 ? ? 48.33 73.43 14 1 PRO G 72 ? ? -49.65 156.75 15 1 TYR H 67 ? ? 48.02 73.61 16 1 PRO H 72 ? ? -49.54 156.81 # _em_3d_fitting.entry_id 6GK3 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6GK3 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 11035 _em_3d_reconstruction.resolution 3.975 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 2.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'two protofilament beta-2-microglobulin amyloid fibril' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6GK3 _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 40 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 3-40 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6GK3 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 100 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 3.25 _em_imaging.nominal_defocus_min 1.75 _em_imaging.nominal_magnification 130000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type 'Quantifoil R3.5/1' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 281.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 80 _em_vitrification.instrument 'FEI VITROBOT MARK II' _em_vitrification.entry_id 6GK3 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6GK3 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLU N N N N 88 GLU CA C N S 89 GLU C C N N 90 GLU O O N N 91 GLU CB C N N 92 GLU CG C N N 93 GLU CD C N N 94 GLU OE1 O N N 95 GLU OE2 O N N 96 GLU OXT O N N 97 GLU H H N N 98 GLU H2 H N N 99 GLU HA H N N 100 GLU HB2 H N N 101 GLU HB3 H N N 102 GLU HG2 H N N 103 GLU HG3 H N N 104 GLU HE2 H N N 105 GLU HXT H N N 106 GLY N N N N 107 GLY CA C N N 108 GLY C C N N 109 GLY O O N N 110 GLY OXT O N N 111 GLY H H N N 112 GLY H2 H N N 113 GLY HA2 H N N 114 GLY HA3 H N N 115 GLY HXT H N N 116 HIS N N N N 117 HIS CA C N S 118 HIS C C N N 119 HIS O O N N 120 HIS CB C N N 121 HIS CG C Y N 122 HIS ND1 N Y N 123 HIS CD2 C Y N 124 HIS CE1 C Y N 125 HIS NE2 N Y N 126 HIS OXT O N N 127 HIS H H N N 128 HIS H2 H N N 129 HIS HA H N N 130 HIS HB2 H N N 131 HIS HB3 H N N 132 HIS HD1 H N N 133 HIS HD2 H N N 134 HIS HE1 H N N 135 HIS HE2 H N N 136 HIS HXT H N N 137 ILE N N N N 138 ILE CA C N S 139 ILE C C N N 140 ILE O O N N 141 ILE CB C N S 142 ILE CG1 C N N 143 ILE CG2 C N N 144 ILE CD1 C N N 145 ILE OXT O N N 146 ILE H H N N 147 ILE H2 H N N 148 ILE HA H N N 149 ILE HB H N N 150 ILE HG12 H N N 151 ILE HG13 H N N 152 ILE HG21 H N N 153 ILE HG22 H N N 154 ILE HG23 H N N 155 ILE HD11 H N N 156 ILE HD12 H N N 157 ILE HD13 H N N 158 ILE HXT H N N 159 LEU N N N N 160 LEU CA C N S 161 LEU C C N N 162 LEU O O N N 163 LEU CB C N N 164 LEU CG C N N 165 LEU CD1 C N N 166 LEU CD2 C N N 167 LEU OXT O N N 168 LEU H H N N 169 LEU H2 H N N 170 LEU HA H N N 171 LEU HB2 H N N 172 LEU HB3 H N N 173 LEU HG H N N 174 LEU HD11 H N N 175 LEU HD12 H N N 176 LEU HD13 H N N 177 LEU HD21 H N N 178 LEU HD22 H N N 179 LEU HD23 H N N 180 LEU HXT H N N 181 LYS N N N N 182 LYS CA C N S 183 LYS C C N N 184 LYS O O N N 185 LYS CB C N N 186 LYS CG C N N 187 LYS CD C N N 188 LYS CE C N N 189 LYS NZ N N N 190 LYS OXT O N N 191 LYS H H N N 192 LYS H2 H N N 193 LYS HA H N N 194 LYS HB2 H N N 195 LYS HB3 H N N 196 LYS HG2 H N N 197 LYS HG3 H N N 198 LYS HD2 H N N 199 LYS HD3 H N N 200 LYS HE2 H N N 201 LYS HE3 H N N 202 LYS HZ1 H N N 203 LYS HZ2 H N N 204 LYS HZ3 H N N 205 LYS HXT H N N 206 PHE N N N N 207 PHE CA C N S 208 PHE C C N N 209 PHE O O N N 210 PHE CB C N N 211 PHE CG C Y N 212 PHE CD1 C Y N 213 PHE CD2 C Y N 214 PHE CE1 C Y N 215 PHE CE2 C Y N 216 PHE CZ C Y N 217 PHE OXT O N N 218 PHE H H N N 219 PHE H2 H N N 220 PHE HA H N N 221 PHE HB2 H N N 222 PHE HB3 H N N 223 PHE HD1 H N N 224 PHE HD2 H N N 225 PHE HE1 H N N 226 PHE HE2 H N N 227 PHE HZ H N N 228 PHE HXT H N N 229 PRO N N N N 230 PRO CA C N S 231 PRO C C N N 232 PRO O O N N 233 PRO CB C N N 234 PRO CG C N N 235 PRO CD C N N 236 PRO OXT O N N 237 PRO H H N N 238 PRO HA H N N 239 PRO HB2 H N N 240 PRO HB3 H N N 241 PRO HG2 H N N 242 PRO HG3 H N N 243 PRO HD2 H N N 244 PRO HD3 H N N 245 PRO HXT H N N 246 SER N N N N 247 SER CA C N S 248 SER C C N N 249 SER O O N N 250 SER CB C N N 251 SER OG O N N 252 SER OXT O N N 253 SER H H N N 254 SER H2 H N N 255 SER HA H N N 256 SER HB2 H N N 257 SER HB3 H N N 258 SER HG H N N 259 SER HXT H N N 260 THR N N N N 261 THR CA C N S 262 THR C C N N 263 THR O O N N 264 THR CB C N R 265 THR OG1 O N N 266 THR CG2 C N N 267 THR OXT O N N 268 THR H H N N 269 THR H2 H N N 270 THR HA H N N 271 THR HB H N N 272 THR HG1 H N N 273 THR HG21 H N N 274 THR HG22 H N N 275 THR HG23 H N N 276 THR HXT H N N 277 TRP N N N N 278 TRP CA C N S 279 TRP C C N N 280 TRP O O N N 281 TRP CB C N N 282 TRP CG C Y N 283 TRP CD1 C Y N 284 TRP CD2 C Y N 285 TRP NE1 N Y N 286 TRP CE2 C Y N 287 TRP CE3 C Y N 288 TRP CZ2 C Y N 289 TRP CZ3 C Y N 290 TRP CH2 C Y N 291 TRP OXT O N N 292 TRP H H N N 293 TRP H2 H N N 294 TRP HA H N N 295 TRP HB2 H N N 296 TRP HB3 H N N 297 TRP HD1 H N N 298 TRP HE1 H N N 299 TRP HE3 H N N 300 TRP HZ2 H N N 301 TRP HZ3 H N N 302 TRP HH2 H N N 303 TRP HXT H N N 304 TYR N N N N 305 TYR CA C N S 306 TYR C C N N 307 TYR O O N N 308 TYR CB C N N 309 TYR CG C Y N 310 TYR CD1 C Y N 311 TYR CD2 C Y N 312 TYR CE1 C Y N 313 TYR CE2 C Y N 314 TYR CZ C Y N 315 TYR OH O N N 316 TYR OXT O N N 317 TYR H H N N 318 TYR H2 H N N 319 TYR HA H N N 320 TYR HB2 H N N 321 TYR HB3 H N N 322 TYR HD1 H N N 323 TYR HD2 H N N 324 TYR HE1 H N N 325 TYR HE2 H N N 326 TYR HH H N N 327 TYR HXT H N N 328 VAL N N N N 329 VAL CA C N S 330 VAL C C N N 331 VAL O O N N 332 VAL CB C N N 333 VAL CG1 C N N 334 VAL CG2 C N N 335 VAL OXT O N N 336 VAL H H N N 337 VAL H2 H N N 338 VAL HA H N N 339 VAL HB H N N 340 VAL HG11 H N N 341 VAL HG12 H N N 342 VAL HG13 H N N 343 VAL HG21 H N N 344 VAL HG22 H N N 345 VAL HG23 H N N 346 VAL HXT H N N 347 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLU N CA sing N N 83 GLU N H sing N N 84 GLU N H2 sing N N 85 GLU CA C sing N N 86 GLU CA CB sing N N 87 GLU CA HA sing N N 88 GLU C O doub N N 89 GLU C OXT sing N N 90 GLU CB CG sing N N 91 GLU CB HB2 sing N N 92 GLU CB HB3 sing N N 93 GLU CG CD sing N N 94 GLU CG HG2 sing N N 95 GLU CG HG3 sing N N 96 GLU CD OE1 doub N N 97 GLU CD OE2 sing N N 98 GLU OE2 HE2 sing N N 99 GLU OXT HXT sing N N 100 GLY N CA sing N N 101 GLY N H sing N N 102 GLY N H2 sing N N 103 GLY CA C sing N N 104 GLY CA HA2 sing N N 105 GLY CA HA3 sing N N 106 GLY C O doub N N 107 GLY C OXT sing N N 108 GLY OXT HXT sing N N 109 HIS N CA sing N N 110 HIS N H sing N N 111 HIS N H2 sing N N 112 HIS CA C sing N N 113 HIS CA CB sing N N 114 HIS CA HA sing N N 115 HIS C O doub N N 116 HIS C OXT sing N N 117 HIS CB CG sing N N 118 HIS CB HB2 sing N N 119 HIS CB HB3 sing N N 120 HIS CG ND1 sing Y N 121 HIS CG CD2 doub Y N 122 HIS ND1 CE1 doub Y N 123 HIS ND1 HD1 sing N N 124 HIS CD2 NE2 sing Y N 125 HIS CD2 HD2 sing N N 126 HIS CE1 NE2 sing Y N 127 HIS CE1 HE1 sing N N 128 HIS NE2 HE2 sing N N 129 HIS OXT HXT sing N N 130 ILE N CA sing N N 131 ILE N H sing N N 132 ILE N H2 sing N N 133 ILE CA C sing N N 134 ILE CA CB sing N N 135 ILE CA HA sing N N 136 ILE C O doub N N 137 ILE C OXT sing N N 138 ILE CB CG1 sing N N 139 ILE CB CG2 sing N N 140 ILE CB HB sing N N 141 ILE CG1 CD1 sing N N 142 ILE CG1 HG12 sing N N 143 ILE CG1 HG13 sing N N 144 ILE CG2 HG21 sing N N 145 ILE CG2 HG22 sing N N 146 ILE CG2 HG23 sing N N 147 ILE CD1 HD11 sing N N 148 ILE CD1 HD12 sing N N 149 ILE CD1 HD13 sing N N 150 ILE OXT HXT sing N N 151 LEU N CA sing N N 152 LEU N H sing N N 153 LEU N H2 sing N N 154 LEU CA C sing N N 155 LEU CA CB sing N N 156 LEU CA HA sing N N 157 LEU C O doub N N 158 LEU C OXT sing N N 159 LEU CB CG sing N N 160 LEU CB HB2 sing N N 161 LEU CB HB3 sing N N 162 LEU CG CD1 sing N N 163 LEU CG CD2 sing N N 164 LEU CG HG sing N N 165 LEU CD1 HD11 sing N N 166 LEU CD1 HD12 sing N N 167 LEU CD1 HD13 sing N N 168 LEU CD2 HD21 sing N N 169 LEU CD2 HD22 sing N N 170 LEU CD2 HD23 sing N N 171 LEU OXT HXT sing N N 172 LYS N CA sing N N 173 LYS N H sing N N 174 LYS N H2 sing N N 175 LYS CA C sing N N 176 LYS CA CB sing N N 177 LYS CA HA sing N N 178 LYS C O doub N N 179 LYS C OXT sing N N 180 LYS CB CG sing N N 181 LYS CB HB2 sing N N 182 LYS CB HB3 sing N N 183 LYS CG CD sing N N 184 LYS CG HG2 sing N N 185 LYS CG HG3 sing N N 186 LYS CD CE sing N N 187 LYS CD HD2 sing N N 188 LYS CD HD3 sing N N 189 LYS CE NZ sing N N 190 LYS CE HE2 sing N N 191 LYS CE HE3 sing N N 192 LYS NZ HZ1 sing N N 193 LYS NZ HZ2 sing N N 194 LYS NZ HZ3 sing N N 195 LYS OXT HXT sing N N 196 PHE N CA sing N N 197 PHE N H sing N N 198 PHE N H2 sing N N 199 PHE CA C sing N N 200 PHE CA CB sing N N 201 PHE CA HA sing N N 202 PHE C O doub N N 203 PHE C OXT sing N N 204 PHE CB CG sing N N 205 PHE CB HB2 sing N N 206 PHE CB HB3 sing N N 207 PHE CG CD1 doub Y N 208 PHE CG CD2 sing Y N 209 PHE CD1 CE1 sing Y N 210 PHE CD1 HD1 sing N N 211 PHE CD2 CE2 doub Y N 212 PHE CD2 HD2 sing N N 213 PHE CE1 CZ doub Y N 214 PHE CE1 HE1 sing N N 215 PHE CE2 CZ sing Y N 216 PHE CE2 HE2 sing N N 217 PHE CZ HZ sing N N 218 PHE OXT HXT sing N N 219 PRO N CA sing N N 220 PRO N CD sing N N 221 PRO N H sing N N 222 PRO CA C sing N N 223 PRO CA CB sing N N 224 PRO CA HA sing N N 225 PRO C O doub N N 226 PRO C OXT sing N N 227 PRO CB CG sing N N 228 PRO CB HB2 sing N N 229 PRO CB HB3 sing N N 230 PRO CG CD sing N N 231 PRO CG HG2 sing N N 232 PRO CG HG3 sing N N 233 PRO CD HD2 sing N N 234 PRO CD HD3 sing N N 235 PRO OXT HXT sing N N 236 SER N CA sing N N 237 SER N H sing N N 238 SER N H2 sing N N 239 SER CA C sing N N 240 SER CA CB sing N N 241 SER CA HA sing N N 242 SER C O doub N N 243 SER C OXT sing N N 244 SER CB OG sing N N 245 SER CB HB2 sing N N 246 SER CB HB3 sing N N 247 SER OG HG sing N N 248 SER OXT HXT sing N N 249 THR N CA sing N N 250 THR N H sing N N 251 THR N H2 sing N N 252 THR CA C sing N N 253 THR CA CB sing N N 254 THR CA HA sing N N 255 THR C O doub N N 256 THR C OXT sing N N 257 THR CB OG1 sing N N 258 THR CB CG2 sing N N 259 THR CB HB sing N N 260 THR OG1 HG1 sing N N 261 THR CG2 HG21 sing N N 262 THR CG2 HG22 sing N N 263 THR CG2 HG23 sing N N 264 THR OXT HXT sing N N 265 TRP N CA sing N N 266 TRP N H sing N N 267 TRP N H2 sing N N 268 TRP CA C sing N N 269 TRP CA CB sing N N 270 TRP CA HA sing N N 271 TRP C O doub N N 272 TRP C OXT sing N N 273 TRP CB CG sing N N 274 TRP CB HB2 sing N N 275 TRP CB HB3 sing N N 276 TRP CG CD1 doub Y N 277 TRP CG CD2 sing Y N 278 TRP CD1 NE1 sing Y N 279 TRP CD1 HD1 sing N N 280 TRP CD2 CE2 doub Y N 281 TRP CD2 CE3 sing Y N 282 TRP NE1 CE2 sing Y N 283 TRP NE1 HE1 sing N N 284 TRP CE2 CZ2 sing Y N 285 TRP CE3 CZ3 doub Y N 286 TRP CE3 HE3 sing N N 287 TRP CZ2 CH2 doub Y N 288 TRP CZ2 HZ2 sing N N 289 TRP CZ3 CH2 sing Y N 290 TRP CZ3 HZ3 sing N N 291 TRP CH2 HH2 sing N N 292 TRP OXT HXT sing N N 293 TYR N CA sing N N 294 TYR N H sing N N 295 TYR N H2 sing N N 296 TYR CA C sing N N 297 TYR CA CB sing N N 298 TYR CA HA sing N N 299 TYR C O doub N N 300 TYR C OXT sing N N 301 TYR CB CG sing N N 302 TYR CB HB2 sing N N 303 TYR CB HB3 sing N N 304 TYR CG CD1 doub Y N 305 TYR CG CD2 sing Y N 306 TYR CD1 CE1 sing Y N 307 TYR CD1 HD1 sing N N 308 TYR CD2 CE2 doub Y N 309 TYR CD2 HD2 sing N N 310 TYR CE1 CZ doub Y N 311 TYR CE1 HE1 sing N N 312 TYR CE2 CZ sing Y N 313 TYR CE2 HE2 sing N N 314 TYR CZ OH sing N N 315 TYR OH HH sing N N 316 TYR OXT HXT sing N N 317 VAL N CA sing N N 318 VAL N H sing N N 319 VAL N H2 sing N N 320 VAL CA C sing N N 321 VAL CA CB sing N N 322 VAL CA HA sing N N 323 VAL C O doub N N 324 VAL C OXT sing N N 325 VAL CB CG1 sing N N 326 VAL CB CG2 sing N N 327 VAL CB HB sing N N 328 VAL CG1 HG11 sing N N 329 VAL CG1 HG12 sing N N 330 VAL CG1 HG13 sing N N 331 VAL CG2 HG21 sing N N 332 VAL CG2 HG22 sing N N 333 VAL CG2 HG23 sing N N 334 VAL OXT HXT sing N N 335 # _em_admin.entry_id 6GK3 _em_admin.current_status REL _em_admin.deposition_date 2018-05-18 _em_admin.deposition_site PDBE _em_admin.last_update 2024-10-23 _em_admin.map_release_date 2018-11-14 _em_admin.title 'Two protofilament beta-2-microglobulin amyloid fibril' # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 20 mM CH3COONa 'Sodium Acetate' 1 2 20 mM Na3PO4 'Sodium phosphate' 1 3 0.01 % NaN3 'Sodium Azide' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 53.3 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -0.608 _em_helical_entity.axial_rise_per_subunit 4.83 _em_helical_entity.axial_symmetry C2 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 38.5 _em_image_recording.average_exposure_time 10 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 5549 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details '300 x 300 pixel Overlapping segments 90% overlap' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 99000 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 2.1 1 ? ? 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? RELION 2.1 1 ? ? 5 'CTF CORRECTION' ? Gctf ? 1 ? ? 6 'LAYERLINE INDEXING' ? ? ? ? ? ? 7 'DIFFRACTION INDEXING' ? ? ? ? ? ? 8 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 9 OTHER ? ? ? ? ? ? 10 'MODEL REFINEMENT' ? PHENIX 1.11.1 ? 1 ? 11 'INITIAL EULER ASSIGNMENT' ? RELION 2.1 1 ? ? 12 'FINAL EULER ASSIGNMENT' ? RELION 2.1 1 ? ? 13 CLASSIFICATION ? RELION ? 1 ? ? 14 RECONSTRUCTION ? RELION ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.025 _em_specimen.details 'Quiescent growth at 0.25 mg/ml for 5 weeks, diluted 10x with buffer' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Research Council' 'United Kingdom' 322408 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' EB-002026 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' AG-058504 3 'Wellcome Trust' 'United Kingdom' 092896MA 4 'Wellcome Trust' 'United Kingdom' 204963 5 # _atom_sites.entry_id 6GK3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_