HEADER IMMUNE SYSTEM 18-MAY-18 6GK7 TITLE CRYSTAL STRUCTURE OF ANTI-TAU ANTIBODY DMCBTAU-27.1, DOUBLE MUTANT TITLE 2 (S31Y, T100I) OF CBTAU-27.1, IN COMPLEX WITH TAU PEPTIDE A8119B TITLE 3 (RESIDUES 299-318) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN FAB ANTIBODY FRAGMENT OF CBTAU-27.1(S31Y,T100I); COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FAB ANTIBODY FRAGMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HUMAN FAB ANTIBODY FRAGMENT OF CBTAU-27.1(S31Y,T100I); COMPND 8 CHAIN: H; COMPND 9 FRAGMENT: FAB ANTIBODY FRAGMENT; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HUMAN TAU PEPTIDE A8119 RESIDUES 299-318; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: FAB ANTIBODY FRAGMENT; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS ANTIBODY, FAB, TAU, COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.STEINBACHER,M.MROSEK,J.JURASZEK REVDAT 1 13-JUN-18 6GK7 0 JRNL AUTH A.APETRI,R.CRESPO,J.JURASZEK,G.PASCUAL,R.JANSON,X.ZHU, JRNL AUTH 2 H.ZHANG,E.KEOGH,T.HOLLAND,J.WADIA,H.VERVEEN,B.SIREGAR, JRNL AUTH 3 M.MROSEK,R.TAGGENBROCK,J.AMEIJDE,H.INGANAS,M.VAN WINSEN, JRNL AUTH 4 M.H.KOLDIJK,D.ZUIJDGEEST,M.BORGERS,K.DOCKX,E.J.M.STOOP,W.YU, JRNL AUTH 5 E.C.BRINKMAN-VAN DER LINDEN,K.UMMENTHUM,K.VAN KOLEN, JRNL AUTH 6 M.MERCKEN,S.STEINBACHER,D.DE MARCO,J.J.HOOZEMANS,I.A.WILSON, JRNL AUTH 7 W.KOUDSTAAL,J.GOUDSMIT JRNL TITL A COMMON ANTIGENIC MOTIF RECOGNIZED BY NATURALLY OCCURRING JRNL TITL 2 HUMAN VH5-51/VL4-1 ANTI-TAU ANTIBODIES WITH DISTINCT JRNL TITL 3 FUNCTIONALITIES. JRNL REF ACTA NEUROPATHOL COMMUN V. 6 43 2018 JRNL REFN ISSN 2051-5960 JRNL PMID 29855358 JRNL DOI 10.1186/S40478-018-0543-Z REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 9734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.200 REMARK 3 FREE R VALUE TEST SET COUNT : 643 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 706 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78000 REMARK 3 B22 (A**2) : -2.09000 REMARK 3 B33 (A**2) : 1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.481 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.405 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.465 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.860 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3472 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3108 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4739 ; 1.383 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7151 ; 1.151 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 6.937 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;39.324 ;24.493 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;12.613 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3976 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 793 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1797 ; 0.819 ; 3.003 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1796 ; 0.815 ; 3.002 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2241 ; 1.425 ; 5.063 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2242 ; 1.426 ; 5.064 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1675 ; 0.780 ; 3.054 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1675 ; 0.776 ; 3.055 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2498 ; 1.354 ; 5.131 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3411 ; 2.366 ;25.881 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3409 ; 2.364 ;25.891 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 290 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): -29.2740 7.4530 -1.4770 REMARK 3 T TENSOR REMARK 3 T11: 0.4079 T22: 0.5437 REMARK 3 T33: 0.3401 T12: 0.0879 REMARK 3 T13: -0.0381 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 1.9535 L22: 1.1798 REMARK 3 L33: 0.1153 L12: 1.5175 REMARK 3 L13: -0.4087 L23: -0.3140 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: 0.1463 S13: 0.4307 REMARK 3 S21: 0.0618 S22: 0.1028 S23: 0.3231 REMARK 3 S31: 0.0005 S32: 0.0093 S33: -0.1750 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 114 REMARK 3 ORIGIN FOR THE GROUP (A): -41.7730 0.7040 15.1560 REMARK 3 T TENSOR REMARK 3 T11: 0.2293 T22: 0.4938 REMARK 3 T33: 0.2131 T12: -0.0429 REMARK 3 T13: -0.1325 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 3.4117 L22: 2.3274 REMARK 3 L33: 4.1421 L12: 1.7018 REMARK 3 L13: -1.3600 L23: -0.9426 REMARK 3 S TENSOR REMARK 3 S11: -0.3576 S12: 1.0166 S13: 0.2381 REMARK 3 S21: -0.6604 S22: 0.3638 S23: 0.1989 REMARK 3 S31: 0.2067 S32: 0.0288 S33: -0.0061 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 115 L 230 REMARK 3 ORIGIN FOR THE GROUP (A): -40.6900 1.2990 53.4430 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.1059 REMARK 3 T33: 0.1548 T12: -0.0275 REMARK 3 T13: 0.0209 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.5339 L22: 1.8522 REMARK 3 L33: 2.2970 L12: 0.2126 REMARK 3 L13: 1.9213 L23: 1.0199 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.3040 S13: 0.2393 REMARK 3 S21: 0.3395 S22: -0.1121 S23: -0.0149 REMARK 3 S31: 0.1277 S32: 0.0313 S33: 0.1060 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 122 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1170 3.1970 18.4290 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.6372 REMARK 3 T33: 0.3002 T12: 0.0494 REMARK 3 T13: 0.0603 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 5.2579 L22: 3.1427 REMARK 3 L33: 3.7446 L12: 1.7594 REMARK 3 L13: 1.5371 L23: 1.3307 REMARK 3 S TENSOR REMARK 3 S11: -0.1109 S12: 1.5348 S13: -0.0734 REMARK 3 S21: -0.4996 S22: 0.1717 S23: -0.4880 REMARK 3 S31: 0.1306 S32: 0.7531 S33: -0.0607 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 123 H 230 REMARK 3 ORIGIN FOR THE GROUP (A): -27.9420 -6.2180 47.2140 REMARK 3 T TENSOR REMARK 3 T11: 0.0572 T22: 0.0613 REMARK 3 T33: 0.1614 T12: 0.0304 REMARK 3 T13: -0.0665 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.6913 L22: 5.1528 REMARK 3 L33: 2.4022 L12: 1.5776 REMARK 3 L13: 0.0815 L23: -0.8555 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.0830 S13: -0.0058 REMARK 3 S21: 0.2852 S22: -0.1139 S23: -0.2464 REMARK 3 S31: -0.0391 S32: 0.2171 S33: 0.1015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10377 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 88.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.91450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.26200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.91450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.26200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN L 3 CD OE1 NE2 REMARK 480 VAL L 29 CG1 CG2 REMARK 480 ARG L 32 CG CD NE CZ NH1 NH2 REMARK 480 ASN L 34 CG OD1 ND2 REMARK 480 LYS L 36 CE NZ REMARK 480 LYS L 45 CD CE NZ REMARK 480 LYS L 51 NZ REMARK 480 SER L 62 OG REMARK 480 LYS L 132 CD CE NZ REMARK 480 LYS L 151 CE NZ REMARK 480 LYS L 175 CE NZ REMARK 480 LYS L 189 NZ REMARK 480 LYS L 194 NZ REMARK 480 LYS L 196 CG CD CE NZ REMARK 480 VAL H 2 CG1 CG2 REMARK 480 LYS H 13 CE NZ REMARK 480 LYS H 19 CG CD CE NZ REMARK 480 LYS H 23 CE NZ REMARK 480 TYR H 52 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 SER H 74 OG REMARK 480 SER H 75 OG REMARK 480 THR H 77 OG1 CG2 REMARK 480 GLN H 82 CG CD OE1 NE2 REMARK 480 SER H 84 OG REMARK 480 LYS H 87 CD CE NZ REMARK 480 ARG H 98 CZ NH1 NH2 REMARK 480 VAL H 103 CG1 CG2 REMARK 480 ASP H 104 CG OD1 OD2 REMARK 480 LYS H 126 NZ REMARK 480 LYS H 215 CE NZ REMARK 480 LYS H 223 CG CD CE NZ REMARK 480 LYS A 311 CG CD CE NZ REMARK 480 LEU A 315 CG CD1 CD2 REMARK 480 LYS A 317 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL L 29 CB VAL L 29 CG1 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL H 2 CA - CB - CG2 ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN L 27 -109.77 -112.30 REMARK 500 SER L 28 126.68 -176.65 REMARK 500 ALA L 57 -69.71 58.87 REMARK 500 VAL L 89 107.38 -54.55 REMARK 500 ASN L 144 82.90 58.96 REMARK 500 LYS L 175 -65.28 -98.41 REMARK 500 SER L 177 17.68 59.04 REMARK 500 LYS L 196 -66.41 -92.53 REMARK 500 ASP H 153 75.27 60.54 REMARK 500 THR H 169 -42.83 -143.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6DCV RELATED DB: PDB REMARK 900 RELATED ID: 6DCW RELATED DB: PDB REMARK 900 RELATED ID: 5ZV3 RELATED DB: PDB DBREF 6GK7 L 2 217 PDB 6GK7 6GK7 2 217 DBREF 6GK7 H 1 223 PDB 6GK7 6GK7 1 223 DBREF 6GK7 A 308 318 PDB 6GK7 6GK7 308 318 SEQRES 1 L 216 ILE GLN LEU THR GLN SER PRO ASP SER LEU ALA VAL SER SEQRES 2 L 216 LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER GLN SEQRES 3 L 216 SER VAL PHE TYR ARG ASP ASN ASN LYS ASN TYR LEU ALA SEQRES 4 L 216 TRP TYR GLN HIS LYS SER GLY GLN PRO PRO LYS LEU LEU SEQRES 5 L 216 PHE PHE TRP ALA SER SER ARG GLU SER GLY VAL SER ASP SEQRES 6 L 216 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 216 THR ILE ASP ASN LEU GLN ALA GLU ASP VAL ALA LEU TYR SEQRES 8 L 216 TYR CYS GLN HIS TYR PHE ASN ILE PRO HIS ASN PHE GLY SEQRES 9 L 216 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 216 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 216 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 216 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 216 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 216 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 216 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 216 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 216 PRO VAL THR LYS SER PHE ASN ARG SEQRES 1 H 223 GLN VAL GLN LEU VAL GLU SER GLY PRO GLU MET ARG LYS SEQRES 2 H 223 PRO GLY GLU SER LEU LYS ILE SER CYS LYS THR SER GLY SEQRES 3 H 223 TYR ILE PHE SER ASP TYR TRP THR ALA TRP VAL ARG GLN SEQRES 4 H 223 LEU PRO GLY LYS GLY LEU GLN TRP MET GLY ILE ILE TYR SEQRES 5 H 223 SER GLY ASP SER ASP THR ARG TYR HIS PRO SER VAL GLN SEQRES 6 H 223 GLY HIS VAL THR MET SER THR ASP SER SER LEU THR THR SEQRES 7 H 223 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 223 GLY ILE TYR TYR CYS ALA ARG LEU ASP ALA ARG VAL ASP SEQRES 9 H 223 ALA GLY TRP GLN LEU ASP SER TRP GLY GLN GLY THR LEU SEQRES 10 H 223 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 223 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 223 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 223 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 223 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 223 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 223 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 223 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 H 223 PRO LYS SEQRES 1 A 11 ILE VAL TYR LYS PRO VAL ASP LEU SER LYS VAL HET CL H 301 1 HET CL H 302 1 HETNAM CL CHLORIDE ION FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *32(H2 O) HELIX 1 AA1 GLN L 85 VAL L 89 5 5 HELIX 2 AA2 SER L 127 GLY L 134 1 8 HELIX 3 AA3 LYS L 189 HIS L 195 1 7 HELIX 4 AA4 ILE H 28 SER H 30 5 3 HELIX 5 AA5 LYS H 87 THR H 91 5 5 HELIX 6 AA6 SER H 136 LYS H 138 5 3 HELIX 7 AA7 SER H 165 ALA H 167 5 3 HELIX 8 AA8 SER H 196 THR H 200 5 5 HELIX 9 AA9 LYS H 210 ASN H 213 5 4 SHEET 1 AA1 4 LEU L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 SER L 25 -1 O ASN L 22 N SER L 7 SHEET 3 AA1 4 ASP L 76 ILE L 81 -1 O LEU L 79 N ILE L 21 SHEET 4 AA1 4 PHE L 68 SER L 73 -1 N SER L 71 O THR L 78 SHEET 1 AA2 6 SER L 10 SER L 14 0 SHEET 2 AA2 6 THR L 108 LYS L 113 1 O GLU L 111 N LEU L 11 SHEET 3 AA2 6 ALA L 90 HIS L 96 -1 N TYR L 92 O THR L 108 SHEET 4 AA2 6 LEU L 39 HIS L 44 -1 N ALA L 40 O GLN L 95 SHEET 5 AA2 6 LYS L 51 PHE L 55 -1 O LEU L 53 N TRP L 41 SHEET 6 AA2 6 SER L 59 ARG L 60 -1 O SER L 59 N PHE L 55 SHEET 1 AA3 2 PHE L 30 TYR L 31 0 SHEET 2 AA3 2 LYS L 36 ASN L 37 -1 O LYS L 36 N TYR L 31 SHEET 1 AA4 4 SER L 120 PHE L 124 0 SHEET 2 AA4 4 THR L 135 PHE L 145 -1 O VAL L 139 N PHE L 124 SHEET 3 AA4 4 TYR L 179 SER L 188 -1 O TYR L 179 N PHE L 145 SHEET 4 AA4 4 SER L 165 VAL L 169 -1 N GLN L 166 O THR L 184 SHEET 1 AA5 4 ALA L 159 LEU L 160 0 SHEET 2 AA5 4 LYS L 151 VAL L 156 -1 N VAL L 156 O ALA L 159 SHEET 3 AA5 4 VAL L 197 THR L 203 -1 O GLU L 201 N GLN L 153 SHEET 4 AA5 4 VAL L 211 ASN L 216 -1 O VAL L 211 N VAL L 202 SHEET 1 AA6 4 GLN H 3 GLU H 6 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA6 4 THR H 78 TRP H 83 -1 O TRP H 83 N LEU H 18 SHEET 4 AA6 4 THR H 69 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA7 6 GLU H 10 ARG H 12 0 SHEET 2 AA7 6 THR H 116 VAL H 120 1 O THR H 119 N ARG H 12 SHEET 3 AA7 6 GLY H 92 ASP H 100 -1 N GLY H 92 O VAL H 118 SHEET 4 AA7 6 TYR H 32 GLN H 39 -1 N ALA H 35 O ALA H 97 SHEET 5 AA7 6 LEU H 45 ILE H 51 -1 O GLN H 46 N ARG H 38 SHEET 6 AA7 6 THR H 58 TYR H 60 -1 O ARG H 59 N ILE H 50 SHEET 1 AA8 4 GLU H 10 ARG H 12 0 SHEET 2 AA8 4 THR H 116 VAL H 120 1 O THR H 119 N ARG H 12 SHEET 3 AA8 4 GLY H 92 ASP H 100 -1 N GLY H 92 O VAL H 118 SHEET 4 AA8 4 LEU H 109 TRP H 112 -1 O SER H 111 N ARG H 98 SHEET 1 AA9 4 SER H 129 LEU H 133 0 SHEET 2 AA9 4 THR H 144 TYR H 154 -1 O LEU H 150 N PHE H 131 SHEET 3 AA9 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 154 SHEET 4 AA9 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 AB1 4 THR H 140 SER H 141 0 SHEET 2 AB1 4 THR H 144 TYR H 154 -1 O THR H 144 N SER H 141 SHEET 3 AB1 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 154 SHEET 4 AB1 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 AB2 3 THR H 160 TRP H 163 0 SHEET 2 AB2 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 AB2 3 THR H 214 ARG H 219 -1 O VAL H 216 N VAL H 207 SSBOND 1 CYS L 23 CYS L 94 1555 1555 2.03 SSBOND 2 CYS L 140 CYS L 200 1555 1555 2.02 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 4 CYS H 149 CYS H 205 1555 1555 2.02 CISPEP 1 SER L 7 PRO L 8 0 -2.04 CISPEP 2 ILE L 100 PRO L 101 0 4.10 CISPEP 3 TYR L 146 PRO L 147 0 4.19 CISPEP 4 PHE H 155 PRO H 156 0 -6.89 CISPEP 5 GLU H 157 PRO H 158 0 2.98 SITE 1 AC1 2 HIS H 173 ASP L 173 SITE 1 AC2 2 GLN H 201 VAL L 169 CRYST1 93.829 60.524 91.048 90.00 104.37 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010658 0.000000 0.002731 0.00000 SCALE2 0.000000 0.016522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011338 0.00000