HEADER SUGAR BINDING PROTEIN 23-MAY-18 6GL5 TITLE CRYSTAL STRUCTURE OF DIMETHYLATED RSL - SULFONATOCALIX[4]ARENE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PUTATIVE FUCOSE-BINDING LECTIN PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: RECOMBINANT PROTEIN DIMETHYLATED AT LYSINE RESIDUES COMPND 8 AND N-TERMINUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA SOLANACEARUM; SOURCE 3 ORGANISM_TAXID: 305; SOURCE 4 GENE: E7Z57_08365, RSP795_21825, RSP822_19650, RUN39_V1_50103; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CALIXARENE, DIMETHYLLYSINE, SUPRAMOLECULAR RECOGNITION, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.GUAGNINI,M.L.RENNIE,P.B.CROWLEY REVDAT 3 17-JAN-24 6GL5 1 REMARK REVDAT 2 05-AUG-20 6GL5 1 COMPND SOURCE DBREF SEQADV REVDAT 2 2 1 SEQRES REVDAT 1 19-JUN-19 6GL5 0 JRNL AUTH F.GUAGNINI,P.M.ANTONIK,M.L.RENNIE,R.PINALLI,E.DALCANALE, JRNL AUTH 2 P.B.CROWLEY JRNL TITL PROTEIN CRYSTALLIZATION VIA SULFONATOCALIX[4]ARENE JRNL TITL 2 DIMETHYLAMMONIUM COMPLEXATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2762 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 374 REMARK 3 SOLVENT ATOMS : 375 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.314 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2615 ; 0.009 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 2026 ; 0.006 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3645 ; 1.415 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4710 ; 1.087 ; 1.966 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 7.371 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;30.969 ;21.739 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 231 ; 9.360 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ; 6.926 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2781 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 527 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 90 B 2 90 2808 0.090 0.050 REMARK 3 2 A 2 90 C 2 90 2794 0.090 0.050 REMARK 3 3 B 2 90 C 2 90 2811 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6GL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42850 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BT9 CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, PH 4.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.87500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.87500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 37.62 -142.63 REMARK 500 MLY B 34 37.77 -140.16 REMARK 500 ASN B 79 54.97 -148.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T3Y A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T3Y B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T3Y B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T3Y C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T3Y C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T3Y C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SNM B 1 and SER B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SNM C 1 and SER C 2 DBREF1 6GL5 A 1 90 UNP A0A0S4TLR1_RALSL DBREF2 6GL5 A A0A0S4TLR1 2 91 DBREF1 6GL5 B 1 90 UNP A0A0S4TLR1_RALSL DBREF2 6GL5 B A0A0S4TLR1 2 91 DBREF1 6GL5 C 1 90 UNP A0A0S4TLR1_RALSL DBREF2 6GL5 C A0A0S4TLR1 2 91 SEQRES 1 A 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 A 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE SEQRES 3 A 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 A 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 A 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 A 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 A 90 ASN GLY TRP THR MLY GLY ALA TYR THR ALA THR ASN SEQRES 1 B 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 B 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE SEQRES 3 B 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 B 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 B 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 B 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 B 90 ASN GLY TRP THR MLY GLY ALA TYR THR ALA THR ASN SEQRES 1 C 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 C 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE SEQRES 3 C 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 C 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 C 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 C 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 C 90 ASN GLY TRP THR MLY GLY ALA TYR THR ALA THR ASN MODRES 6GL5 SNM A 1 SER MODIFIED RESIDUE MODRES 6GL5 MLY A 25 LYS MODIFIED RESIDUE MODRES 6GL5 MLY A 34 LYS MODIFIED RESIDUE MODRES 6GL5 MLY A 83 LYS MODIFIED RESIDUE MODRES 6GL5 SNM B 1 SER MODIFIED RESIDUE MODRES 6GL5 MLY B 25 LYS MODIFIED RESIDUE MODRES 6GL5 MLY B 34 LYS MODIFIED RESIDUE MODRES 6GL5 MLY B 83 LYS MODIFIED RESIDUE MODRES 6GL5 SNM C 1 SER MODIFIED RESIDUE MODRES 6GL5 MLY C 25 LYS MODIFIED RESIDUE MODRES 6GL5 MLY C 34 LYS MODIFIED RESIDUE MODRES 6GL5 MLY C 83 LYS MODIFIED RESIDUE HET SNM A 1 8 HET MLY A 25 11 HET MLY A 34 11 HET MLY A 83 11 HET SNM B 1 8 HET MLY B 25 11 HET MLY B 34 11 HET MLY B 83 11 HET SNM C 1 8 HET MLY C 25 11 HET MLY C 34 11 HET MLY C 83 11 HET T3Y A 101 48 HET GOL A 102 6 HET GOL A 103 6 HET PG4 A 104 13 HET PEG A 105 7 HET EDO A 106 4 HET T3Y B 101 48 HET T3Y B 102 48 HET GOL B 103 6 HET GOL B 104 6 HET PEG B 105 7 HET PEG B 106 7 HET T3Y C 101 48 HET T3Y C 102 48 HET T3Y C 103 48 HET GOL C 104 6 HET GOL C 105 6 HET SO4 C 106 5 HET PEG C 107 7 HETNAM SNM N,N-DIMETHYL-L-SERINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM T3Y 25,26,27,28-TETRAHYDROXYPENTACYCLO[19.3.1.1~3,7~.1~9, HETNAM 2 T3Y 13~.1~15,19~]OCTACOSA-1(25),3(28),4,6,9(27),10,12, HETNAM 3 T3Y 15(26),16,18,21,23-DODECAENE-5,11,17,23-TETRASULFONIC HETNAM 4 T3Y ACID HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN T3Y 5,11,17,23-TETRA-SULPHONATO-CALIX[4]ARENE-25,26,27,28- HETSYN 2 T3Y TETROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 SNM 3(C5 H11 N O3) FORMUL 1 MLY 9(C8 H18 N2 O2) FORMUL 4 T3Y 6(C28 H24 O16 S4) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 7 PG4 C8 H18 O5 FORMUL 8 PEG 4(C4 H10 O3) FORMUL 9 EDO C2 H6 O2 FORMUL 21 SO4 O4 S 2- FORMUL 23 HOH *375(H2 O) SHEET 1 AA1 4 GLN A 4 TRP A 10 0 SHEET 2 AA1 4 SER A 15 ASN A 22 -1 O ALA A 21 N GLN A 4 SHEET 3 AA1 4 MLY A 25 TRP A 31 -1 O MLY A 25 N ASN A 22 SHEET 4 AA1 4 TRP A 36 THR A 38 -1 O TYR A 37 N CYS A 30 SHEET 1 AA2 4 GLN A 4 TRP A 10 0 SHEET 2 AA2 4 SER A 15 ASN A 22 -1 O ALA A 21 N GLN A 4 SHEET 3 AA2 4 MLY A 25 TRP A 31 -1 O MLY A 25 N ASN A 22 SHEET 4 AA2 4 GLU A 43 PRO A 44 -1 O GLU A 43 N ILE A 26 SHEET 1 AA3 4 ASN A 47 VAL A 55 0 SHEET 2 AA3 4 ALA A 58 THR A 67 -1 O ARG A 62 N THR A 51 SHEET 3 AA3 4 THR A 70 TRP A 76 -1 O THR A 72 N ALA A 65 SHEET 4 AA3 4 TRP A 81 MLY A 83 -1 O THR A 82 N CYS A 75 SHEET 1 AA4 4 GLN B 4 TRP B 10 0 SHEET 2 AA4 4 SER B 15 ASN B 22 -1 O ALA B 21 N GLN B 4 SHEET 3 AA4 4 MLY B 25 TRP B 31 -1 O ARG B 29 N VAL B 18 SHEET 4 AA4 4 TRP B 36 PRO B 44 -1 O TYR B 37 N CYS B 30 SHEET 1 AA5 4 ASN B 47 VAL B 55 0 SHEET 2 AA5 4 ALA B 58 THR B 67 -1 O ARG B 62 N THR B 51 SHEET 3 AA5 4 THR B 70 TRP B 76 -1 O THR B 72 N ALA B 65 SHEET 4 AA5 4 TRP B 81 MLY B 83 -1 O THR B 82 N CYS B 75 SHEET 1 AA6 4 GLN C 4 TRP C 10 0 SHEET 2 AA6 4 SER C 15 ASN C 22 -1 O ALA C 21 N GLN C 4 SHEET 3 AA6 4 MLY C 25 TRP C 31 -1 O MLY C 25 N ASN C 22 SHEET 4 AA6 4 TRP C 36 PRO C 44 -1 O TYR C 37 N CYS C 30 SHEET 1 AA7 4 ASN C 47 VAL C 55 0 SHEET 2 AA7 4 ALA C 58 THR C 67 -1 O ARG C 62 N THR C 51 SHEET 3 AA7 4 THR C 70 TRP C 76 -1 O THR C 72 N ALA C 65 SHEET 4 AA7 4 TRP C 81 MLY C 83 -1 O THR C 82 N CYS C 75 LINK C SNM A 1 N SER A 2 1555 1555 1.27 LINK C GLY A 24 N MLY A 25 1555 1555 1.33 LINK C MLY A 25 N ILE A 26 1555 1555 1.34 LINK C GLY A 33 N MLY A 34 1555 1555 1.33 LINK C MLY A 34 N GLY A 35 1555 1555 1.31 LINK C THR A 82 N MLY A 83 1555 1555 1.32 LINK C MLY A 83 N GLY A 84 1555 1555 1.33 LINK C SNM B 1 N SER B 2 1555 1555 1.29 LINK C GLY B 24 N MLY B 25 1555 1555 1.34 LINK C MLY B 25 N ILE B 26 1555 1555 1.34 LINK C GLY B 33 N MLY B 34 1555 1555 1.34 LINK C MLY B 34 N GLY B 35 1555 1555 1.33 LINK C THR B 82 N MLY B 83 1555 1555 1.33 LINK C MLY B 83 N GLY B 84 1555 1555 1.32 LINK C SNM C 1 N SER C 2 1555 1555 1.30 LINK C GLY C 24 N MLY C 25 1555 1555 1.34 LINK C MLY C 25 N ILE C 26 1555 1555 1.34 LINK C GLY C 33 N MLY C 34 1555 1555 1.33 LINK C MLY C 34 N GLY C 35 1555 1555 1.33 LINK C THR C 82 N MLY C 83 1555 1555 1.33 LINK C MLY C 83 N GLY C 84 1555 1555 1.33 CISPEP 1 VAL A 13 PRO A 14 0 -7.45 CISPEP 2 VAL B 13 PRO B 14 0 -5.87 CISPEP 3 VAL B 13 PRO B 14 0 -12.88 CISPEP 4 VAL C 13 PRO C 14 0 -8.25 SITE 1 AC1 19 SNM A 1 SER A 2 ASN A 23 MLY A 34 SITE 2 AC1 19 ASP A 46 HOH A 211 HOH A 212 HOH A 215 SITE 3 AC1 19 HOH A 220 HOH A 223 HOH A 226 HOH A 261 SITE 4 AC1 19 TRP B 31 MLY B 34 GLY B 35 T3Y B 102 SITE 5 AC1 19 ALA C 85 T3Y C 102 HOH C 269 SITE 1 AC2 6 ARG A 17 GLU A 28 ALA A 40 TRP A 76 SITE 2 AC2 6 TRP A 81 HOH A 230 SITE 1 AC3 10 ARG A 62 GLU A 73 GLY A 84 ALA A 85 SITE 2 AC3 10 TYR A 86 HOH A 252 HOH A 257 ILE C 16 SITE 3 AC3 10 TRP C 31 TRP C 36 SITE 1 AC4 9 ALA A 40 ASN A 42 GLU A 43 HOH A 237 SITE 2 AC4 9 TRP B 74 TRP B 81 MLY B 83 HOH B 201 SITE 3 AC4 9 T3Y C 101 SITE 1 AC5 10 ARG A 29 TRP A 36 TYR A 37 THR A 38 SITE 2 AC5 10 THR A 67 GLY A 68 HOH A 289 HOH B 212 SITE 3 AC5 10 T3Y C 102 HOH C 278 SITE 1 AC6 2 HOH A 213 T3Y C 102 SITE 1 AC7 19 SNM B 1 SER B 2 THR B 12 VAL B 13 SITE 2 AC7 19 PRO B 14 ASN B 23 TRP B 31 HOH B 204 SITE 3 AC7 19 HOH B 252 HOH B 258 HOH B 261 TRP C 53 SITE 4 AC7 19 VAL C 55 HIS C 60 ARG C 62 THR C 69 SITE 5 AC7 19 GOL C 104 HOH C 257 HOH C 261 SITE 1 AC8 14 VAL A 13 ASP A 32 MLY A 34 T3Y A 101 SITE 2 AC8 14 HOH A 211 HOH A 222 ARG B 29 TRP B 36 SITE 3 AC8 14 TYR B 37 THR B 38 PEG B 105 PEG B 106 SITE 4 AC8 14 HOH B 214 HOH B 225 SITE 1 AC9 10 ILE A 16 MLY A 25 TRP A 31 TRP A 36 SITE 2 AC9 10 ARG B 62 GLU B 73 GLY B 84 ALA B 85 SITE 3 AC9 10 TYR B 86 HOH B 242 SITE 1 AD1 8 ARG B 17 GLU B 28 ALA B 40 PHE B 41 SITE 2 AD1 8 TRP B 76 TRP B 81 HOH B 248 HOH B 285 SITE 1 AD2 1 T3Y B 102 SITE 1 AD3 5 THR B 38 T3Y B 102 HOH B 211 HOH B 262 SITE 2 AD3 5 HOH B 269 SITE 1 AD4 28 GLU A 43 TRP A 74 GLY A 80 TRP A 81 SITE 2 AD4 28 THR A 82 MLY A 83 PG4 A 104 HOH A 208 SITE 3 AD4 28 HOH A 250 PRO B 44 THR B 67 THR B 70 SITE 4 AD4 28 MLY B 83 HOH B 233 HOH B 250 THR C 82 SITE 5 AD4 28 MLY C 83 HOH C 219 HOH C 226 HOH C 227 SITE 6 AD4 28 HOH C 232 HOH C 237 HOH C 241 HOH C 243 SITE 7 AD4 28 HOH C 259 HOH C 268 HOH C 277 HOH C 299 SITE 1 AD5 17 MLY A 34 GLY A 35 TRP A 36 ASP A 46 SITE 2 AD5 17 THR A 67 GLY A 68 T3Y A 101 PEG A 105 SITE 3 AD5 17 EDO A 106 HOH A 261 HOH A 271 SNM C 1 SITE 4 AD5 17 SER C 2 HOH C 210 HOH C 214 HOH C 278 SITE 5 AD5 17 HOH C 282 SITE 1 AD6 14 TRP C 10 SER C 15 ARG C 17 ASP C 32 SITE 2 AD6 14 SER C 57 ALA C 58 ILE C 59 TRP C 76 SITE 3 AD6 14 GLY C 78 GOL C 105 HOH C 206 HOH C 239 SITE 4 AD6 14 HOH C 266 HOH C 267 SITE 1 AD7 11 ILE B 16 TRP B 31 TRP B 36 T3Y B 101 SITE 2 AD7 11 HOH B 204 ARG C 62 GLU C 73 GLY C 84 SITE 3 AD7 11 ALA C 85 TYR C 86 HOH C 269 SITE 1 AD8 8 ARG C 17 GLU C 28 ALA C 40 PHE C 41 SITE 2 AD8 8 TRP C 76 TRP C 81 T3Y C 103 HOH C 239 SITE 1 AD9 3 ARG C 29 TYR C 37 THR C 38 SITE 1 AE1 2 TRP C 36 TYR C 37 SITE 1 AE2 8 VAL B 3 ASN B 22 ASN B 23 T3Y B 101 SITE 2 AE2 8 HOH B 239 HOH B 266 GLY C 68 THR C 69 SITE 1 AE3 8 ASP A 46 THR A 67 GLY A 68 VAL C 3 SITE 2 AE3 8 T3Y C 102 HOH C 214 HOH C 242 HOH C 250 CRYST1 53.920 67.570 87.750 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018546 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011396 0.00000 HETATM 1 N SNM A 1 8.207 -21.998 13.718 1.00 20.46 N HETATM 2 CA SNM A 1 7.890 -20.631 13.286 1.00 19.79 C HETATM 3 CB SNM A 1 9.013 -20.027 12.454 1.00 20.42 C HETATM 4 OG SNM A 1 9.291 -20.997 11.459 1.00 21.41 O HETATM 5 C SNM A 1 6.648 -20.649 12.427 1.00 18.56 C HETATM 6 O SNM A 1 6.413 -21.669 11.731 1.00 21.01 O HETATM 7 C1 SNM A 1 9.470 -22.022 14.503 1.00 22.04 C HETATM 8 C2 SNM A 1 7.089 -22.509 14.539 1.00 20.81 C