HEADER TRANSFERASE 23-MAY-18 6GL9 TITLE CRYSTAL STRUCTURE OF JAK3 IN COMPLEX WITH COMPOUND 10 (FM475) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE JAK3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: JANUS KINASE 3,JAK-3,LEUKOCYTE JANUS KINASE,L-JAK; COMPND 5 EC: 2.7.10.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JAK3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID KEYWDS KINASE, JAK3, COVALENT INHIBITOR, REVERSIBLE COVALENT INHIBITOR, KEYWDS 2 INDUCED POCKET, ARGININE POCKET, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,M.FORSTER,F.VON DELFT,A.M.EDWARDS,C.H.ARROWSMITH, AUTHOR 2 C.BOUNTRA,S.A.LAUFER,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 17-JAN-24 6GL9 1 REMARK REVDAT 2 11-JUL-18 6GL9 1 JRNL REVDAT 1 27-JUN-18 6GL9 0 JRNL AUTH M.FORSTER,A.CHAIKUAD,T.DIMITROV,E.DORING,J.HOLSTEIN, JRNL AUTH 2 B.T.BERGER,M.GEHRINGER,K.GHORESCHI,S.MULLER,S.KNAPP, JRNL AUTH 3 S.A.LAUFER JRNL TITL DEVELOPMENT, OPTIMIZATION, AND STRUCTURE-ACTIVITY JRNL TITL 2 RELATIONSHIPS OF COVALENT-REVERSIBLE JAK3 INHIBITORS BASED JRNL TITL 3 ON A TRICYCLIC IMIDAZO[5,4- D]PYRROLO[2,3- B]PYRIDINE JRNL TITL 4 SCAFFOLD. JRNL REF J. MED. CHEM. V. 61 5350 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29852068 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00571 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 51642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4634 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.23000 REMARK 3 B22 (A**2) : 1.42000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.40000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4982 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4763 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6731 ; 1.658 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10970 ; 1.197 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 609 ; 6.170 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;34.561 ;22.719 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 844 ;13.399 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;15.927 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 703 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5941 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1187 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2368 ; 1.080 ; 1.400 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2363 ; 1.081 ; 1.399 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2965 ; 1.919 ; 2.093 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2964 ; 1.919 ; 2.093 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2614 ; 1.127 ; 1.556 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2614 ; 1.127 ; 1.556 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3755 ; 1.847 ; 2.256 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5708 ; 5.340 ;11.760 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5709 ; 5.340 ;11.766 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 813 1102 B 813 1102 35248 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 812 A 984 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6443 2.2557 70.5167 REMARK 3 T TENSOR REMARK 3 T11: 0.0193 T22: 0.0489 REMARK 3 T33: 0.0793 T12: 0.0074 REMARK 3 T13: -0.0224 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.4277 L22: 1.4892 REMARK 3 L33: 0.6428 L12: 0.2861 REMARK 3 L13: -0.3837 L23: -0.0227 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: 0.1009 S13: 0.1574 REMARK 3 S21: 0.0055 S22: -0.0507 S23: -0.0435 REMARK 3 S31: -0.0774 S32: -0.0206 S33: 0.0141 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 985 A 1103 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4349 -16.7301 67.3005 REMARK 3 T TENSOR REMARK 3 T11: 0.0266 T22: 0.0170 REMARK 3 T33: 0.1007 T12: -0.0154 REMARK 3 T13: -0.0013 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.7561 L22: 1.5084 REMARK 3 L33: 1.9921 L12: -0.0878 REMARK 3 L13: 0.3860 L23: 0.4642 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.0842 S13: -0.1365 REMARK 3 S21: -0.0505 S22: -0.0099 S23: 0.0376 REMARK 3 S31: 0.1530 S32: -0.0467 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 813 B 984 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0251 -7.5655 39.3113 REMARK 3 T TENSOR REMARK 3 T11: 0.0314 T22: 0.0240 REMARK 3 T33: 0.0830 T12: 0.0155 REMARK 3 T13: 0.0008 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.2630 L22: 1.3177 REMARK 3 L33: 0.8699 L12: 0.3557 REMARK 3 L13: 0.4323 L23: 0.0508 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: 0.0829 S13: -0.1587 REMARK 3 S21: 0.0031 S22: -0.0437 S23: 0.0328 REMARK 3 S31: 0.1082 S32: 0.0174 S33: -0.0171 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 985 B 1103 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2739 11.4136 37.4834 REMARK 3 T TENSOR REMARK 3 T11: 0.0344 T22: 0.0049 REMARK 3 T33: 0.0938 T12: -0.0074 REMARK 3 T13: -0.0120 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.2917 L22: 1.3393 REMARK 3 L33: 1.9616 L12: 0.1163 REMARK 3 L13: -0.1443 L23: -0.6150 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0066 S13: 0.0935 REMARK 3 S21: -0.0353 S22: -0.0186 S23: -0.0473 REMARK 3 S31: -0.1617 S32: 0.0344 S33: 0.0029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54150 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 19.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LWM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24-30% PEG 3350, 0.1 M MES, PH 5.5-6.0 REMARK 280 AND 0.1-0.2 M MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 810 REMARK 465 MET A 811 REMARK 465 SER B 810 REMARK 465 MET B 811 REMARK 465 GLN B 812 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 812 CG CD OE1 NE2 REMARK 470 ARG A 895 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 813 CG OD1 OD2 REMARK 470 ARG B 895 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 896 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 911 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 953 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 820 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 870 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 LEU B 905 CB - CG - CD2 ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG B 953 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 984 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 962 116.95 -160.21 REMARK 500 ALA A 966 -168.17 -125.60 REMARK 500 ASP A 967 81.71 49.24 REMARK 500 GLU A 985 97.61 -55.78 REMARK 500 PRO A 986 -167.58 -79.59 REMARK 500 SER A1040 1.80 -60.37 REMARK 500 ALA B 966 -164.34 -123.31 REMARK 500 ASP B 967 83.03 42.61 REMARK 500 GLU B 985 98.11 -55.64 REMARK 500 PRO B 986 -167.62 -79.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F3W A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PHU A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F3W B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PHU B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GLA RELATED DB: PDB REMARK 900 RELATED ID: 6GLB RELATED DB: PDB DBREF 6GL9 A 812 1103 UNP P52333 JAK3_HUMAN 812 1103 DBREF 6GL9 B 812 1103 UNP P52333 JAK3_HUMAN 812 1103 SEQADV 6GL9 SER A 810 UNP P52333 EXPRESSION TAG SEQADV 6GL9 MET A 811 UNP P52333 EXPRESSION TAG SEQADV 6GL9 ALA A 949 UNP P52333 ASP 949 CONFLICT SEQADV 6GL9 SER A 1040 UNP P52333 CYS 1040 CONFLICT SEQADV 6GL9 SER A 1048 UNP P52333 CYS 1048 CONFLICT SEQADV 6GL9 SER B 810 UNP P52333 EXPRESSION TAG SEQADV 6GL9 MET B 811 UNP P52333 EXPRESSION TAG SEQADV 6GL9 ALA B 949 UNP P52333 ASP 949 CONFLICT SEQADV 6GL9 SER B 1040 UNP P52333 CYS 1040 CONFLICT SEQADV 6GL9 SER B 1048 UNP P52333 CYS 1048 CONFLICT SEQRES 1 A 294 SER MET GLN ASP PRO THR ILE PHE GLU GLU ARG HIS LEU SEQRES 2 A 294 LYS TYR ILE SER GLN LEU GLY LYS GLY ASN PHE GLY SER SEQRES 3 A 294 VAL GLU LEU CYS ARG TYR ASP PRO LEU GLY ASP ASN THR SEQRES 4 A 294 GLY ALA LEU VAL ALA VAL LYS GLN LEU GLN HIS SER GLY SEQRES 5 A 294 PRO ASP GLN GLN ARG ASP PHE GLN ARG GLU ILE GLN ILE SEQRES 6 A 294 LEU LYS ALA LEU HIS SER ASP PHE ILE VAL LYS TYR ARG SEQRES 7 A 294 GLY VAL SER TYR GLY PRO GLY ARG GLN SER LEU ARG LEU SEQRES 8 A 294 VAL MET GLU TYR LEU PRO SER GLY CYS LEU ARG ASP PHE SEQRES 9 A 294 LEU GLN ARG HIS ARG ALA ARG LEU ASP ALA SER ARG LEU SEQRES 10 A 294 LEU LEU TYR SER SER GLN ILE CYS LYS GLY MET GLU TYR SEQRES 11 A 294 LEU GLY SER ARG ARG CYS VAL HIS ARG ALA LEU ALA ALA SEQRES 12 A 294 ARG ASN ILE LEU VAL GLU SER GLU ALA HIS VAL LYS ILE SEQRES 13 A 294 ALA ASP PHE GLY LEU ALA LYS LEU LEU PRO LEU ASP LYS SEQRES 14 A 294 ASP TYR TYR VAL VAL ARG GLU PRO GLY GLN SER PRO ILE SEQRES 15 A 294 PHE TRP TYR ALA PRO GLU SER LEU SER ASP ASN ILE PHE SEQRES 16 A 294 SER ARG GLN SER ASP VAL TRP SER PHE GLY VAL VAL LEU SEQRES 17 A 294 TYR GLU LEU PHE THR TYR CYS ASP LYS SER CYS SER PRO SEQRES 18 A 294 SER ALA GLU PHE LEU ARG MET MET GLY SER GLU ARG ASP SEQRES 19 A 294 VAL PRO ALA LEU SER ARG LEU LEU GLU LEU LEU GLU GLU SEQRES 20 A 294 GLY GLN ARG LEU PRO ALA PRO PRO ALA CYS PRO ALA GLU SEQRES 21 A 294 VAL HIS GLU LEU MET LYS LEU CYS TRP ALA PRO SER PRO SEQRES 22 A 294 GLN ASP ARG PRO SER PHE SER ALA LEU GLY PRO GLN LEU SEQRES 23 A 294 ASP MET LEU TRP SER GLY SER ARG SEQRES 1 B 294 SER MET GLN ASP PRO THR ILE PHE GLU GLU ARG HIS LEU SEQRES 2 B 294 LYS TYR ILE SER GLN LEU GLY LYS GLY ASN PHE GLY SER SEQRES 3 B 294 VAL GLU LEU CYS ARG TYR ASP PRO LEU GLY ASP ASN THR SEQRES 4 B 294 GLY ALA LEU VAL ALA VAL LYS GLN LEU GLN HIS SER GLY SEQRES 5 B 294 PRO ASP GLN GLN ARG ASP PHE GLN ARG GLU ILE GLN ILE SEQRES 6 B 294 LEU LYS ALA LEU HIS SER ASP PHE ILE VAL LYS TYR ARG SEQRES 7 B 294 GLY VAL SER TYR GLY PRO GLY ARG GLN SER LEU ARG LEU SEQRES 8 B 294 VAL MET GLU TYR LEU PRO SER GLY CYS LEU ARG ASP PHE SEQRES 9 B 294 LEU GLN ARG HIS ARG ALA ARG LEU ASP ALA SER ARG LEU SEQRES 10 B 294 LEU LEU TYR SER SER GLN ILE CYS LYS GLY MET GLU TYR SEQRES 11 B 294 LEU GLY SER ARG ARG CYS VAL HIS ARG ALA LEU ALA ALA SEQRES 12 B 294 ARG ASN ILE LEU VAL GLU SER GLU ALA HIS VAL LYS ILE SEQRES 13 B 294 ALA ASP PHE GLY LEU ALA LYS LEU LEU PRO LEU ASP LYS SEQRES 14 B 294 ASP TYR TYR VAL VAL ARG GLU PRO GLY GLN SER PRO ILE SEQRES 15 B 294 PHE TRP TYR ALA PRO GLU SER LEU SER ASP ASN ILE PHE SEQRES 16 B 294 SER ARG GLN SER ASP VAL TRP SER PHE GLY VAL VAL LEU SEQRES 17 B 294 TYR GLU LEU PHE THR TYR CYS ASP LYS SER CYS SER PRO SEQRES 18 B 294 SER ALA GLU PHE LEU ARG MET MET GLY SER GLU ARG ASP SEQRES 19 B 294 VAL PRO ALA LEU SER ARG LEU LEU GLU LEU LEU GLU GLU SEQRES 20 B 294 GLY GLN ARG LEU PRO ALA PRO PRO ALA CYS PRO ALA GLU SEQRES 21 B 294 VAL HIS GLU LEU MET LYS LEU CYS TRP ALA PRO SER PRO SEQRES 22 B 294 GLN ASP ARG PRO SER PHE SER ALA LEU GLY PRO GLN LEU SEQRES 23 B 294 ASP MET LEU TRP SER GLY SER ARG HET F3W A1201 28 HET PHU A1202 10 HET GOL A1203 6 HET EDO A1204 4 HET EDO A1205 4 HET EDO A1206 4 HET EDO A1207 4 HET EDO A1208 4 HET EDO A1209 4 HET EDO A1210 4 HET F3W B1201 28 HET PHU B1202 10 HET GOL B1203 6 HET EDO B1204 4 HET EDO B1205 4 HET EDO B1206 4 HET EDO B1207 4 HET EDO B1208 4 HET EDO B1209 4 HETNAM F3W (~{E})-3-[3-(3-CYCLOHEXYL-3,5,8,10- HETNAM 2 F3W TETRAZATRICYCLO[7.3.0.0^{2,6}]DODECA-1(9),2(6),4,7,11- HETNAM 3 F3W PENTAEN-4-YL)PHENYL]PROP-2-ENENITRILE HETNAM PHU 1-PHENYLUREA HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN PHU PHENYLUREA HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 F3W 2(C23 H21 N5) FORMUL 4 PHU 2(C7 H8 N2 O) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 EDO 13(C2 H6 O2) FORMUL 22 HOH *321(H2 O) HELIX 1 AA1 GLU A 818 ARG A 820 5 3 HELIX 2 AA2 GLY A 861 LEU A 878 1 18 HELIX 3 AA3 CYS A 909 ARG A 918 1 10 HELIX 4 AA4 ALA A 919 LEU A 921 5 3 HELIX 5 AA5 ASP A 922 ARG A 943 1 22 HELIX 6 AA6 ALA A 951 ARG A 953 5 3 HELIX 7 AA7 PRO A 990 TYR A 994 5 5 HELIX 8 AA8 ALA A 995 ASN A 1002 1 8 HELIX 9 AA9 ARG A 1006 THR A 1022 1 17 HELIX 10 AB1 ASP A 1025 CYS A 1028 5 4 HELIX 11 AB2 SER A 1029 MET A 1038 1 10 HELIX 12 AB3 PRO A 1045 GLU A 1056 1 12 HELIX 13 AB4 PRO A 1067 TRP A 1078 1 12 HELIX 14 AB5 SER A 1081 ARG A 1085 5 5 HELIX 15 AB6 SER A 1087 ARG A 1103 1 17 HELIX 16 AB7 GLY B 861 LEU B 878 1 18 HELIX 17 AB8 CYS B 909 ARG B 918 1 10 HELIX 18 AB9 ALA B 919 LEU B 921 5 3 HELIX 19 AC1 ASP B 922 ARG B 943 1 22 HELIX 20 AC2 ALA B 951 ARG B 953 5 3 HELIX 21 AC3 PRO B 990 TYR B 994 5 5 HELIX 22 AC4 ALA B 995 ASN B 1002 1 8 HELIX 23 AC5 ARG B 1006 THR B 1022 1 17 HELIX 24 AC6 ASP B 1025 CYS B 1028 5 4 HELIX 25 AC7 SER B 1029 MET B 1038 1 10 HELIX 26 AC8 PRO B 1045 GLU B 1056 1 12 HELIX 27 AC9 PRO B 1067 TRP B 1078 1 12 HELIX 28 AD1 SER B 1081 ARG B 1085 5 5 HELIX 29 AD2 SER B 1087 ARG B 1103 1 17 SHEET 1 AA1 5 LEU A 822 LYS A 830 0 SHEET 2 AA1 5 GLY A 834 TYR A 841 -1 O VAL A 836 N LEU A 828 SHEET 3 AA1 5 LEU A 851 LEU A 857 -1 O VAL A 854 N GLU A 837 SHEET 4 AA1 5 ARG A 899 GLU A 903 -1 O MET A 902 N ALA A 853 SHEET 5 AA1 5 TYR A 886 SER A 890 -1 N GLY A 888 O VAL A 901 SHEET 1 AA2 2 CYS A 945 VAL A 946 0 SHEET 2 AA2 2 LYS A 972 LEU A 973 -1 O LYS A 972 N VAL A 946 SHEET 1 AA3 2 ILE A 955 SER A 959 0 SHEET 2 AA3 2 HIS A 962 ILE A 965 -1 O LYS A 964 N LEU A 956 SHEET 1 AA4 2 TYR A 980 VAL A 982 0 SHEET 2 AA4 2 ILE A1003 SER A1005 -1 O PHE A1004 N TYR A 981 SHEET 1 AA5 6 ILE B 816 GLU B 818 0 SHEET 2 AA5 6 TYR B 886 TYR B 891 1 O VAL B 889 N PHE B 817 SHEET 3 AA5 6 ARG B 899 GLU B 903 -1 O VAL B 901 N GLY B 888 SHEET 4 AA5 6 LEU B 851 LEU B 857 -1 N ALA B 853 O MET B 902 SHEET 5 AA5 6 GLY B 834 TYR B 841 -1 N GLU B 837 O VAL B 854 SHEET 6 AA5 6 LEU B 822 LYS B 830 -1 N LEU B 828 O VAL B 836 SHEET 1 AA6 2 CYS B 945 VAL B 946 0 SHEET 2 AA6 2 LYS B 972 LEU B 973 -1 O LYS B 972 N VAL B 946 SHEET 1 AA7 2 ILE B 955 SER B 959 0 SHEET 2 AA7 2 HIS B 962 ILE B 965 -1 O LYS B 964 N LEU B 956 SHEET 1 AA8 2 TYR B 980 VAL B 982 0 SHEET 2 AA8 2 ILE B1003 SER B1005 -1 O PHE B1004 N TYR B 981 SITE 1 AC1 13 LEU A 828 VAL A 836 ALA A 853 GLU A 903 SITE 2 AC1 13 TYR A 904 LEU A 905 CYS A 909 ARG A 911 SITE 3 AC1 13 ASP A 912 ARG A 953 LEU A 956 EDO A1206 SITE 4 AC1 13 HOH A1379 SITE 1 AC2 6 TRP A1011 PRO A1030 ARG A1059 LEU A1060 SITE 2 AC2 6 TRP A1078 HOH A1361 SITE 1 AC3 10 VAL A 946 ARG A 948 TYR A 994 ALA A 995 SITE 2 AC3 10 SER A 998 PHE A1004 SER A1008 ASP A1009 SITE 3 AC3 10 SER A1012 HOH A1306 SITE 1 AC4 4 LYS A 823 ARG A 840 ASN A 847 ARG A 984 SITE 1 AC5 6 GLN A 827 LYS A 830 HOH A1309 HOH A1357 SITE 2 AC5 6 PHE B 882 HIS B 962 SITE 1 AC6 7 GLY A 831 GLY A 834 LYS A 855 F3W A1201 SITE 2 AC6 7 HOH A1317 HOH A1324 HOH A1378 SITE 1 AC7 5 ASP A 846 ASN A 847 ASP A 863 ASP A 867 SITE 2 AC7 5 ARG A 870 SITE 1 AC8 7 LEU A 875 LYS A 876 LEU A 878 HIS A 879 SITE 2 AC8 7 LYS A 885 TYR A 886 HOH A1371 SITE 1 AC9 5 ARG A 911 GLN A 915 GLU A1019 CYS A1024 SITE 2 AC9 5 SER A1029 SITE 1 AD1 8 HIS A 917 ARG A 920 PRO A 996 LEU A1054 SITE 2 AD1 8 GLU A1055 ARG A1059 PRO A1080 HOH A1323 SITE 1 AD2 12 LEU B 828 ALA B 853 GLU B 903 TYR B 904 SITE 2 AD2 12 LEU B 905 CYS B 909 ARG B 911 ASP B 912 SITE 3 AD2 12 ARG B 953 ASN B 954 LEU B 956 HOH B1397 SITE 1 AD3 7 TRP B1011 PRO B1030 MET B1037 ARG B1059 SITE 2 AD3 7 LEU B1060 TRP B1078 HOH B1343 SITE 1 AD4 10 VAL B 946 ARG B 948 TYR B 994 ALA B 995 SITE 2 AD4 10 SER B 998 PHE B1004 SER B1008 ASP B1009 SITE 3 AD4 10 SER B1012 HOH B1308 SITE 1 AD5 3 ARG B 840 ASN B 847 ARG B 984 SITE 1 AD6 3 GLY B 834 LYS B 855 HOH B1361 SITE 1 AD7 5 ASP B 846 ASN B 847 ASP B 863 ASP B 867 SITE 2 AD7 5 ARG B 870 SITE 1 AD8 5 LEU B 878 HIS B 879 LYS B 885 TYR B 886 SITE 2 AD8 5 HOH B1318 SITE 1 AD9 5 ARG B 911 GLU B1019 CYS B1024 SER B1029 SITE 2 AD9 5 HOH B1385 SITE 1 AE1 4 SER B1029 SER B1031 ALA B1032 LEU B1035 CRYST1 42.020 50.424 61.588 91.93 90.03 92.80 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023798 0.001163 0.000050 0.00000 SCALE2 0.000000 0.019855 0.000669 0.00000 SCALE3 0.000000 0.000000 0.016246 0.00000