HEADER BIOTIN-BINDING PROTEIN 26-MAY-18 6GMI TITLE GENETIC ENGINEERING OF AN ARTIFICIAL METALLOENZYME FOR TRANSFER TITLE 2 HYDROGENATION OF A SELF-IMMOLATIVE SUBSTRATE IN E. COLI'S PERIPLASM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTAVIDIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: T7-TAG ON THE N-TERMINUS OF STREPTAVIDIN, INSERTION OF COMPND 7 SPLSEALTKANSPAEAYKASRGAGA FOR E116 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 3 ORGANISM_TAXID: 1895; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOTIN-BINDING PROTEIN, ARTIFICIAL TRANSFER HYDROGENASE, BETA BARREL, KEYWDS 2 STREPTAVIDIN EXPDTA X-RAY DIFFRACTION AUTHOR J.G.REBELEIN REVDAT 3 17-JAN-24 6GMI 1 REMARK REVDAT 2 31-OCT-18 6GMI 1 COMPND JRNL REVDAT 1 10-OCT-18 6GMI 0 JRNL AUTH J.ZHAO,J.G.REBELEIN,H.MALLIN,C.TRINDLER,M.M.PELLIZZONI, JRNL AUTH 2 T.R.WARD JRNL TITL GENETIC ENGINEERING OF AN ARTIFICIAL METALLOENZYME FOR JRNL TITL 2 TRANSFER HYDROGENATION OF A SELF-IMMOLATIVE SUBSTRATE IN JRNL TITL 3 ESCHERICHIA COLI'S PERIPLASM. JRNL REF J. AM. CHEM. SOC. V. 140 13171 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 30272972 JRNL DOI 10.1021/JACS.8B07189 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1425 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.700 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 988 ; 0.015 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 790 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1395 ; 2.523 ; 1.753 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1833 ; 1.040 ; 1.648 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 7.145 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;27.836 ;22.558 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 125 ;12.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;20.461 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 131 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1126 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 200 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 490 ; 3.012 ; 2.968 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 489 ; 2.926 ; 2.962 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 613 ; 4.062 ; 4.415 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 614 ; 4.059 ; 4.421 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 498 ; 3.574 ; 3.239 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 450 ; 3.533 ; 3.202 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 678 ; 5.260 ; 4.654 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1082 ; 8.227 ;34.607 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1034 ; 8.227 ;34.349 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20991 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.40 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SPG 9 PH (BUFFER) 25 %W/V PEG REMARK 280 1500 (PRECIPITANT), PH 9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.75350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 28.75350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.06500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.75350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.03250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.75350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 138.09750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.75350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 138.09750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.75350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.03250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 28.75350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 28.75350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.06500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 28.75350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 28.75350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 92.06500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 28.75350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 138.09750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 28.75350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 46.03250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 28.75350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 46.03250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 28.75350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 138.09750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 28.75350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 28.75350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 92.06500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -161.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 57.50700 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 57.50700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 57.50700 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 57.50700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 MET A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 GLN A 9 REMARK 465 MET A 10 REMARK 465 GLY A 11 REMARK 465 ARG A 12 REMARK 465 SER A 116 REMARK 465 PRO A 117 REMARK 465 LEU A 118 REMARK 465 SER A 119 REMARK 465 GLU A 120 REMARK 465 ALA A 121 REMARK 465 LEU A 122 REMARK 465 THR A 123 REMARK 465 LYS A 124 REMARK 465 ALA A 125 REMARK 465 ASN A 126 REMARK 465 SER A 127 REMARK 465 PRO A 128 REMARK 465 ALA A 129 REMARK 465 GLU A 130 REMARK 465 ALA A 131 REMARK 465 TYR A 132 REMARK 465 LYS A 133 REMARK 465 ALA A 134 REMARK 465 SER A 135 REMARK 465 ARG A 136 REMARK 465 GLY A 137 REMARK 465 ALA A 138 REMARK 465 GLY A 139 REMARK 465 ALA A 140 REMARK 465 PRO A 158 REMARK 465 SER A 159 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 SER A 162 REMARK 465 ILE A 163 REMARK 465 ASP A 164 REMARK 465 ALA A 165 REMARK 465 ALA A 166 REMARK 465 LYS A 167 REMARK 465 LYS A 168 REMARK 465 ALA A 169 REMARK 465 GLY A 170 REMARK 465 VAL A 171 REMARK 465 ASN A 172 REMARK 465 ASN A 173 REMARK 465 GLY A 174 REMARK 465 ASN A 175 REMARK 465 PRO A 176 REMARK 465 LEU A 177 REMARK 465 ASP A 178 REMARK 465 ALA A 179 REMARK 465 VAL A 180 REMARK 465 GLN A 181 REMARK 465 GLN A 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 87 CE1 - NE2 - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 -153.18 64.05 REMARK 500 TRP A 79 48.68 -85.04 REMARK 500 GLU A 101 70.99 -117.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 103 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4IR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR3 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR3 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR3 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR3 A 205 DBREF 6GMI A 15 182 UNP P22629 SAV_STRAV 39 183 SEQADV 6GMI ALA A 2 UNP P22629 EXPRESSION TAG SEQADV 6GMI SER A 3 UNP P22629 EXPRESSION TAG SEQADV 6GMI MET A 4 UNP P22629 EXPRESSION TAG SEQADV 6GMI THR A 5 UNP P22629 EXPRESSION TAG SEQADV 6GMI GLY A 6 UNP P22629 EXPRESSION TAG SEQADV 6GMI GLY A 7 UNP P22629 EXPRESSION TAG SEQADV 6GMI GLN A 8 UNP P22629 EXPRESSION TAG SEQADV 6GMI GLN A 9 UNP P22629 EXPRESSION TAG SEQADV 6GMI MET A 10 UNP P22629 EXPRESSION TAG SEQADV 6GMI GLY A 11 UNP P22629 EXPRESSION TAG SEQADV 6GMI ARG A 12 UNP P22629 EXPRESSION TAG SEQADV 6GMI ASP A 13 UNP P22629 EXPRESSION TAG SEQADV 6GMI GLN A 14 UNP P22629 EXPRESSION TAG SEQADV 6GMI VAL A 112 UNP P22629 SER 136 ENGINEERED MUTATION SEQADV 6GMI SER A 116 UNP P22629 INSERTION SEQADV 6GMI PRO A 117 UNP P22629 INSERTION SEQADV 6GMI LEU A 118 UNP P22629 INSERTION SEQADV 6GMI SER A 119 UNP P22629 INSERTION SEQADV 6GMI GLU A 120 UNP P22629 INSERTION SEQADV 6GMI ALA A 121 UNP P22629 INSERTION SEQADV 6GMI LEU A 122 UNP P22629 INSERTION SEQADV 6GMI THR A 123 UNP P22629 INSERTION SEQADV 6GMI LYS A 124 UNP P22629 INSERTION SEQADV 6GMI ALA A 125 UNP P22629 INSERTION SEQADV 6GMI ASN A 126 UNP P22629 INSERTION SEQADV 6GMI SER A 127 UNP P22629 INSERTION SEQADV 6GMI PRO A 128 UNP P22629 INSERTION SEQADV 6GMI ALA A 129 UNP P22629 INSERTION SEQADV 6GMI ALA A 131 UNP P22629 INSERTION SEQADV 6GMI TYR A 132 UNP P22629 INSERTION SEQADV 6GMI LYS A 133 UNP P22629 INSERTION SEQADV 6GMI ALA A 134 UNP P22629 INSERTION SEQADV 6GMI SER A 135 UNP P22629 INSERTION SEQADV 6GMI ARG A 136 UNP P22629 INSERTION SEQADV 6GMI GLY A 137 UNP P22629 INSERTION SEQADV 6GMI ALA A 138 UNP P22629 INSERTION SEQADV 6GMI GLY A 139 UNP P22629 INSERTION SEQADV 6GMI ALA A 144 UNP P22629 LYS 145 ENGINEERED MUTATION SEQRES 1 A 181 ALA SER MET THR GLY GLY GLN GLN MET GLY ARG ASP GLN SEQRES 2 A 181 ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU GLY SER SEQRES 3 A 181 THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA LEU THR SEQRES 4 A 181 GLY THR TYR GLU SER ALA VAL GLY ASN ALA GLU SER ARG SEQRES 5 A 181 TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO ALA THR SEQRES 6 A 181 ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL ALA TRP SEQRES 7 A 181 LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR THR TRP SEQRES 8 A 181 SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG ILE ASN SEQRES 9 A 181 THR GLN TRP LEU LEU THR VAL GLY THR THR SER PRO LEU SEQRES 10 A 181 SER GLU ALA LEU THR LYS ALA ASN SER PRO ALA GLU ALA SEQRES 11 A 181 TYR LYS ALA SER ARG GLY ALA GLY ALA ASN ALA TRP ALA SEQRES 12 A 181 SER THR LEU VAL GLY HIS ASP THR PHE THR LYS VAL LYS SEQRES 13 A 181 PRO SER ALA ALA SER ILE ASP ALA ALA LYS LYS ALA GLY SEQRES 14 A 181 VAL ASN ASN GLY ASN PRO LEU ASP ALA VAL GLN GLN HET 4IR A 201 41 HET IR3 A 202 1 HET IR3 A 203 1 HET IR3 A 204 1 HET IR3 A 205 1 HETNAM 4IR {N-(4-{[2-(AMINO-KAPPAN)ETHYL]SULFAMOYL-KAPPAN}PHENYL)- HETNAM 2 4IR 5-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4- HETNAM 3 4IR D]IMIDAZOL-4-YL]PENTANAMIDE}(CHLORO)[(1,2,3,4,5-ETA)- HETNAM 4 4IR 1,2,3,4,5-PENTAMETHYLCYCLOPENTADIENYL]IRIDIUM(III) HETNAM IR3 IRIDIUM (III) ION HETSYN 4IR N-(4-{[(2-AMINOETHYL)AMINO]SULFONYL}PHENYL)-5-[(3AS,4S, HETSYN 2 4IR 6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4- HETSYN 3 4IR YL]PENTANAMIDE-(1,2,3,4,5,6-ETA)- HETSYN 4 4IR PENTAMETHYLCYCLOHEXYL-CHLORO-IRIDIUM(III) FORMUL 2 4IR C28 H45 CL IR N5 O4 S2 2+ FORMUL 3 IR3 4(IR 3+) FORMUL 7 HOH *34(H2 O) HELIX 1 AA1 ASP A 13 THR A 18 1 6 HELIX 2 AA2 ASN A 141 ALA A 144 5 4 SHEET 1 AA1 9 GLY A 19 ASN A 23 0 SHEET 2 AA1 9 THR A 28 ALA A 33 -1 O VAL A 31 N GLY A 19 SHEET 3 AA1 9 ALA A 38 GLU A 44 -1 O THR A 42 N ILE A 30 SHEET 4 AA1 9 TYR A 54 TYR A 60 -1 O TYR A 54 N TYR A 43 SHEET 5 AA1 9 THR A 71 LYS A 80 -1 O THR A 76 N THR A 57 SHEET 6 AA1 9 ASN A 85 VAL A 97 -1 O GLY A 94 N LEU A 73 SHEET 7 AA1 9 ARG A 103 VAL A 112 -1 O ARG A 103 N VAL A 97 SHEET 8 AA1 9 THR A 146 THR A 154 -1 O PHE A 153 N ILE A 104 SHEET 9 AA1 9 GLY A 19 ASN A 23 -1 N TYR A 22 O THR A 154 LINK NE2 HIS A 87 IR IR3 A 202 1555 1555 2.23 SITE 1 AC1 16 ASN A 23 SER A 27 TYR A 43 SER A 45 SITE 2 AC1 16 VAL A 47 GLY A 48 ASN A 49 TRP A 79 SITE 3 AC1 16 SER A 88 THR A 90 TRP A 108 VAL A 112 SITE 4 AC1 16 TRP A 143 ALA A 144 LEU A 147 ASP A 151 SITE 1 AC2 1 HIS A 87 SITE 1 AC3 2 HIS A 150 IR3 A 205 SITE 1 AC4 2 HIS A 150 IR3 A 205 SITE 1 AC5 3 HIS A 150 IR3 A 203 IR3 A 204 CRYST1 57.507 57.507 184.130 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017389 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005431 0.00000