data_6GN4 # _entry.id 6GN4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6GN4 pdb_00006gn4 10.2210/pdb6gn4/pdb WWPDB D_1200010271 ? ? BMRB 34277 ? 10.13018/BMR34277 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-06-06 2 'Structure model' 2 0 2018-06-13 3 'Structure model' 2 1 2019-04-03 4 'Structure model' 2 2 2019-05-08 5 'Structure model' 3 0 2019-05-15 6 'Structure model' 3 1 2019-05-22 7 'Structure model' 3 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Polymer sequence' 6 2 'Structure model' 'Structure summary' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Database references' 9 4 'Structure model' 'Data collection' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Polymer sequence' 12 6 'Structure model' 'Data collection' 13 6 'Structure model' 'Database references' 14 7 'Structure model' 'Data collection' 15 7 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' entity_poly 5 2 'Structure model' entity_poly_seq 6 2 'Structure model' ndb_struct_na_base_pair 7 2 'Structure model' ndb_struct_na_base_pair_step 8 2 'Structure model' pdbx_poly_seq_scheme 9 2 'Structure model' struct_conn 10 3 'Structure model' citation 11 3 'Structure model' citation_author 12 3 'Structure model' pdbx_database_proc 13 4 'Structure model' pdbx_nmr_software 14 5 'Structure model' entity_poly 15 5 'Structure model' pdbx_seq_map_depositor_info 16 6 'Structure model' citation 17 6 'Structure model' database_PDB_rev 18 6 'Structure model' database_PDB_rev_record 19 6 'Structure model' pdbx_database_proc 20 7 'Structure model' chem_comp_atom 21 7 'Structure model' chem_comp_bond 22 7 'Structure model' database_2 23 7 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.Cartn_x' 2 2 'Structure model' '_atom_site.Cartn_y' 3 2 'Structure model' '_atom_site.Cartn_z' 4 2 'Structure model' '_atom_site.auth_atom_id' 5 2 'Structure model' '_atom_site.auth_comp_id' 6 2 'Structure model' '_atom_site.label_atom_id' 7 2 'Structure model' '_atom_site.label_comp_id' 8 2 'Structure model' '_chem_comp.formula' 9 2 'Structure model' '_chem_comp.formula_weight' 10 2 'Structure model' '_chem_comp.id' 11 2 'Structure model' '_chem_comp.name' 12 2 'Structure model' '_entity.formula_weight' 13 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 14 2 'Structure model' '_entity_poly_seq.mon_id' 15 2 'Structure model' '_ndb_struct_na_base_pair.i_label_comp_id' 16 2 'Structure model' '_ndb_struct_na_base_pair.j_label_comp_id' 17 2 'Structure model' '_ndb_struct_na_base_pair.pair_name' 18 2 'Structure model' '_ndb_struct_na_base_pair_step.i_label_comp_id_1' 19 2 'Structure model' '_ndb_struct_na_base_pair_step.j_label_comp_id_2' 20 2 'Structure model' '_ndb_struct_na_base_pair_step.step_name' 21 2 'Structure model' '_pdbx_poly_seq_scheme.mon_id' 22 2 'Structure model' '_pdbx_poly_seq_scheme.pdb_mon_id' 23 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 3 'Structure model' '_citation.country' 28 3 'Structure model' '_citation.journal_abbrev' 29 3 'Structure model' '_citation.journal_id_ASTM' 30 3 'Structure model' '_citation.journal_id_CSD' 31 3 'Structure model' '_citation.journal_id_ISSN' 32 3 'Structure model' '_citation.pdbx_database_id_DOI' 33 3 'Structure model' '_citation.pdbx_database_id_PubMed' 34 3 'Structure model' '_citation.title' 35 3 'Structure model' '_citation.year' 36 3 'Structure model' '_citation_author.name' 37 4 'Structure model' '_pdbx_nmr_software.name' 38 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 39 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code' 40 6 'Structure model' '_citation.journal_volume' 41 6 'Structure model' '_citation.page_first' 42 6 'Structure model' '_citation.page_last' 43 7 'Structure model' '_database_2.pdbx_DOI' 44 7 'Structure model' '_database_2.pdbx_database_accession' 45 7 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6GN4 _pdbx_database_status.recvd_initial_deposition_date 2018-05-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6GMY unspecified BMRB 'tc-DNA/tc-DNA duplex' 34277 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Istrate, A.' 1 0000-0003-3385-497X 'Johannsen, S.' 2 ? 'Istrate, A.' 3 ? 'Sigel, R.K.O.' 4 ? 'Leumann, C.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 4872 _citation.page_last 4882 _citation.title 'NMR solution structure of tricyclo-DNA containing duplexes: insight into enhanced thermal stability and nuclease resistance.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkz197 _citation.pdbx_database_id_PubMed 30916334 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Istrate, A.' 1 ? primary 'Johannsen, S.' 2 ? primary 'Istrate, A.' 3 ? primary 'Sigel, R.K.O.' 4 ? primary 'Leumann, C.J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;Tc-DNA (5'-D(*(TCJ)P*(TTK)P*(TCJ)P*(TCS)P*(TCS)P*(TCJ)P*(TTK)P*(TTK)P*(TCY)P*(TCJ))-3') ; 3352.575 1 ? ? ? ? 2 polymer syn ;Tc-DNA (5'-D(*(TCS)P*(TTK)P*(TCY)P*(TCY)P*(TCS)P*(TCJ)P*(TCJ)P*(TCS)P*(TCY)P*(TCS))-3') ; 3422.597 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(F7H)(EAN)(TCJ)(F4Q)(F4Q)(TCJ)(EAN)(EAN)(TCY)(TCJ)' CTCGGCTTAC A ? 2 polydeoxyribonucleotide no yes '(F7K)(EAN)(TCY)(TCY)(F4Q)(TCJ)(TCJ)(F4Q)(TCY)(F4Q)' GTAAGCCGAG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 F7H n 1 2 EAN n 1 3 TCJ n 1 4 F4Q n 1 5 F4Q n 1 6 TCJ n 1 7 EAN n 1 8 EAN n 1 9 TCY n 1 10 TCJ n 2 1 F7K n 2 2 EAN n 2 3 TCY n 2 4 TCY n 2 5 F4Q n 2 6 TCJ n 2 7 TCJ n 2 8 F4Q n 2 9 TCY n 2 10 F4Q n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 10 'Homo sapiens' ? 9606 ? 2 1 sample 1 10 'Homo sapiens' ? 9606 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight EAN 'DNA linking' n ;[(1~{S},2~{R},4~{R},6~{S},8~{R})-8-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-6-oxidanyl-9-oxatricyclo[4.3.0.0^{2,4}]nonan-2-yl] dihydrogen phosphate ; ? 'C13 H17 N2 O8 P' 360.256 F4Q 'DNA linking' n ;[(1~{S},2~{R},4~{R},6~{S},8~{R})-8-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-6-oxidanyl-9-oxatricyclo[4.3.0.0^{2,4}]nonan-2-yl] dihydrogen phosphate ; ? 'C13 H16 N5 O7 P' 385.269 F7H 'DNA linking' n '4-azanyl-1-[(1~{S},2~{R},4~{S},6~{S},8~{R})-2,6-bis(oxidanyl)-9-oxatricyclo[4.3.0.0^{2,4}]nonan-8-yl]-5-methyl-pyrimidin-2-one' ? 'C13 H17 N3 O4' 279.292 F7K 'DNA linking' n '2-azanyl-9-[(1~{S},2~{R},4~{S},6~{S},8~{R})-2,6-bis(oxidanyl)-9-oxatricyclo[4.3.0.0^{2,4}]nonan-8-yl]-1~{H}-purin-6-one' ? 'C13 H15 N5 O4' 305.289 TCJ 'DNA linking' n ;[(1~{S},2~{R},4~{R},6~{S},8~{R})-8-(4-azanyl-5-methyl-2-oxidanylidene-pyrimidin-1-yl)-6-oxidanyl-9-oxatricyclo[4.3.0.0^{2,4}]nonan-2-yl] dihydrogen phosphate ; ? 'C13 H18 N3 O7 P' 359.272 TCY 'DNA linking' n ;(2R,3aS,4aR,5aR,5bS)-2-(6-amino-9H-purin-9-yl)-3a-hydroxyhexahydrocyclopropa[4,5]cyclopenta[1,2-b]furan-5a(4H)-yl dihydrogen phosphate ; ? 'C13 H16 N5 O6 P' 369.270 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 F7H 1 1 1 F7H TCJ A . n A 1 2 EAN 2 2 2 EAN TTK A . n A 1 3 TCJ 3 3 3 TCJ TCJ A . n A 1 4 F4Q 4 4 4 F4Q TCS A . n A 1 5 F4Q 5 5 5 F4Q TCS A . n A 1 6 TCJ 6 6 6 TCJ TCJ A . n A 1 7 EAN 7 7 7 EAN TTK A . n A 1 8 EAN 8 8 8 EAN TTK A . n A 1 9 TCY 9 9 9 TCY TCY A . n A 1 10 TCJ 10 10 10 TCJ TCJ A . n B 2 1 F7K 1 11 11 F7K TCS B . n B 2 2 EAN 2 12 12 EAN TTK B . n B 2 3 TCY 3 13 13 TCY TCY B . n B 2 4 TCY 4 14 14 TCY TCY B . n B 2 5 F4Q 5 15 15 F4Q TCS B . n B 2 6 TCJ 6 16 16 TCJ TCJ B . n B 2 7 TCJ 7 17 17 TCJ TCJ B . n B 2 8 F4Q 8 18 18 F4Q TCS B . n B 2 9 TCY 9 19 19 TCY TCY B . n B 2 10 F4Q 10 20 20 F4Q TCS B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6GN4 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6GN4 _struct.title 'tc-DNA/tc-DNA duplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6GN4 _struct_keywords.text 'tricyclo-DNA, Modified nucleic acids, Modified oligonucleotide, Tc-DNA, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6GN4 6GN4 ? 1 ? 1 2 PDB 6GN4 6GN4 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6GN4 A 1 ? 10 ? 6GN4 1 ? 10 ? 1 10 2 2 6GN4 B 1 ? 10 ? 6GN4 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A F7H 1 "O3'" ? ? ? 1_555 A EAN 2 P ? ? A F7H 1 A EAN 2 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale2 covale one ? A EAN 2 "O3'" ? ? ? 1_555 A TCJ 3 P ? ? A EAN 2 A TCJ 3 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale3 covale one ? A TCJ 3 "O3'" ? ? ? 1_555 A F4Q 4 P ? ? A TCJ 3 A F4Q 4 1_555 ? ? ? ? ? ? ? 1.635 ? ? covale4 covale one ? A F4Q 4 "O3'" ? ? ? 1_555 A F4Q 5 P ? ? A F4Q 4 A F4Q 5 1_555 ? ? ? ? ? ? ? 1.633 ? ? covale5 covale one ? A F4Q 5 "O3'" ? ? ? 1_555 A TCJ 6 P ? ? A F4Q 5 A TCJ 6 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale6 covale one ? A TCJ 6 "O3'" ? ? ? 1_555 A EAN 7 P ? ? A TCJ 6 A EAN 7 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale7 covale one ? A EAN 7 "O3'" ? ? ? 1_555 A EAN 8 P ? ? A EAN 7 A EAN 8 1_555 ? ? ? ? ? ? ? 1.632 ? ? covale8 covale one ? A EAN 8 "O3'" ? ? ? 1_555 A TCY 9 P ? ? A EAN 8 A TCY 9 1_555 ? ? ? ? ? ? ? 1.629 ? ? covale9 covale both ? A TCY 9 "O3'" ? ? ? 1_555 A TCJ 10 P ? ? A TCY 9 A TCJ 10 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale10 covale one ? B F7K 1 "O3'" ? ? ? 1_555 B EAN 2 P ? ? B F7K 11 B EAN 12 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale11 covale one ? B EAN 2 "O3'" ? ? ? 1_555 B TCY 3 P ? ? B EAN 12 B TCY 13 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale12 covale both ? B TCY 3 "O3'" ? ? ? 1_555 B TCY 4 P ? ? B TCY 13 B TCY 14 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale13 covale both ? B TCY 4 "O3'" ? ? ? 1_555 B F4Q 5 P ? ? B TCY 14 B F4Q 15 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale14 covale one ? B F4Q 5 "O3'" ? ? ? 1_555 B TCJ 6 P ? ? B F4Q 15 B TCJ 16 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale15 covale one ? B TCJ 6 "O3'" ? ? ? 1_555 B TCJ 7 P ? ? B TCJ 16 B TCJ 17 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale16 covale one ? B TCJ 7 "O3'" ? ? ? 1_555 B F4Q 8 P ? ? B TCJ 17 B F4Q 18 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale17 covale one ? B F4Q 8 "O3'" ? ? ? 1_555 B TCY 9 P ? ? B F4Q 18 B TCY 19 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale18 covale both ? B TCY 9 "O3'" ? ? ? 1_555 B F4Q 10 P ? ? B TCY 19 B F4Q 20 1_555 ? ? ? ? ? ? ? 1.631 ? ? hydrog1 hydrog ? ? A F7H 1 N3 ? ? ? 1_555 B F4Q 10 N1 ? ? A F7H 1 B F4Q 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A F7H 1 N4 ? ? ? 1_555 B F4Q 10 O6 ? ? A F7H 1 B F4Q 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A F7H 1 O2 ? ? ? 1_555 B F4Q 10 N2 ? ? A F7H 1 B F4Q 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A EAN 2 N3 ? ? ? 1_555 B TCY 9 N1 ? ? A EAN 2 B TCY 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A EAN 2 O4 ? ? ? 1_555 B TCY 9 N6 ? ? A EAN 2 B TCY 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A TCJ 3 N3 ? ? ? 1_555 B F4Q 8 N1 ? ? A TCJ 3 B F4Q 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A TCJ 3 N4 ? ? ? 1_555 B F4Q 8 O6 ? ? A TCJ 3 B F4Q 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A TCJ 3 O2 ? ? ? 1_555 B F4Q 8 N2 ? ? A TCJ 3 B F4Q 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A F4Q 4 N1 ? ? ? 1_555 B TCJ 7 N3 ? ? A F4Q 4 B TCJ 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A F4Q 4 N2 ? ? ? 1_555 B TCJ 7 O2 ? ? A F4Q 4 B TCJ 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A F4Q 4 O6 ? ? ? 1_555 B TCJ 7 N4 ? ? A F4Q 4 B TCJ 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A F4Q 5 N1 ? ? ? 1_555 B TCJ 6 N3 ? ? A F4Q 5 B TCJ 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A F4Q 5 N2 ? ? ? 1_555 B TCJ 6 O2 ? ? A F4Q 5 B TCJ 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A F4Q 5 O6 ? ? ? 1_555 B TCJ 6 N4 ? ? A F4Q 5 B TCJ 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A TCJ 6 N3 ? ? ? 1_555 B F4Q 5 N1 ? ? A TCJ 6 B F4Q 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A TCJ 6 N4 ? ? ? 1_555 B F4Q 5 O6 ? ? A TCJ 6 B F4Q 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A TCJ 6 O2 ? ? ? 1_555 B F4Q 5 N2 ? ? A TCJ 6 B F4Q 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A EAN 7 N3 ? ? ? 1_555 B TCY 4 N1 ? ? A EAN 7 B TCY 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A EAN 7 O4 ? ? ? 1_555 B TCY 4 N6 ? ? A EAN 7 B TCY 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A EAN 8 N3 ? ? ? 1_555 B TCY 3 N1 ? ? A EAN 8 B TCY 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A EAN 8 O4 ? ? ? 1_555 B TCY 3 N6 ? ? A EAN 8 B TCY 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A TCY 9 N1 ? ? ? 1_555 B EAN 2 N3 ? ? A TCY 9 B EAN 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A TCY 9 N6 ? ? ? 1_555 B EAN 2 O4 ? ? A TCY 9 B EAN 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A TCJ 10 N3 ? ? ? 1_555 B F7K 1 N1 ? ? A TCJ 10 B F7K 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A TCJ 10 N4 ? ? ? 1_555 B F7K 1 O6 ? ? A TCJ 10 B F7K 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A TCJ 10 O2 ? ? ? 1_555 B F7K 1 N2 ? ? A TCJ 10 B F7K 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_nmr_ensemble.entry_id 6GN4 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6GN4 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.5 mM tc-DNA/tc-DNA, 50 mM NaCl, 10 mM NaH2PO4, 100% D2O' '100% D2O' 'D2O 298' solution ? 2 '0.5 mM tc-DNA/tc-DNA, 50 mM NaCl, 10 mM NaH2PO4, 90% H2O/10% D2O' '90% H2O/10% D2O' H2O solution ? 3 '0.5 mM tc-DNA/tc-DNA, 50 mM NaCl, 10 mM NaH2PO4, 100% D2O' '100% D2O' 'D2O 283' solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 tc-DNA/tc-DNA 0.5 ? mM 'natural abundance' 1 NaCl 50 ? mM 'natural abundance' 1 NaH2PO4 10 ? mM 'natural abundance' 2 tc-DNA/tc-DNA 0.5 ? mM 'natural abundance' 2 NaCl 50 ? mM 'natural abundance' 2 NaH2PO4 10 ? mM 'natural abundance' 3 tc-DNA/tc-DNA 0.5 ? mM 'natural abundance' 3 NaCl 50 ? mM 'natural abundance' 3 NaH2PO4 10 ? mM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 7.05 'NaCl 50 mM, NaH2PO4 10 mM' ? ? 'Not defined' 'D2O 298' ? pH ? ? K 2 283 atm 1 7.05 'NaCl 50 mM, NaH2PO4 10 mM' ? ? 'Not defined' H2O ? pH ? ? K 3 283 atm 1 7.05 'NaCl 50 mM, NaH2PO4 10 mM' ? ? 'Not defined' 'D2O 283' ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D DQF-COSY' 1 isotropic 3 1 1 '2D 1H-1H TOCSY' 1 isotropic 4 1 1 '2D 1H-13C HSQC' 1 isotropic 5 2 2 '2D 1H-1H NOESY' 1 isotropic 6 3 3 '2D 1H-1H NOESY' 1 isotropic # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 6GN4 'simulated annealing' ? 1 6GN4 'simulated annealing' ? 5 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 5 refinement GROMOS ? 'van Gunsteren and Berendsen' 2 'chemical shift assignment' Sparky ? Goddard 3 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal EAN C7 C N N 1 EAN C6 C N N 2 EAN C5 C N N 3 EAN C4 C N N 4 EAN C2 C N N 5 EAN P P N N 6 EAN O1P O N N 7 EAN O2P O N N 8 EAN "O5'" O N N 9 EAN "C5'" C N R 10 EAN "C4'" C N S 11 EAN "O4'" O N N 12 EAN "C1'" C N R 13 EAN N1 N N N 14 EAN O4 O N N 15 EAN N3 N N N 16 EAN O2 O N N 17 EAN "C3'" C N S 18 EAN "C2'" C N N 19 EAN "C7'" C N N 20 EAN "C6'" C N S 21 EAN "C8'" C N N 22 EAN "O3'" O N N 23 EAN O3P O N N 24 EAN H73 H N N 25 EAN H71 H N N 26 EAN H72 H N N 27 EAN H6 H N N 28 EAN H1 H N N 29 EAN "H4'" H N N 30 EAN "H1'" H N N 31 EAN H3 H N N 32 EAN "H2'" H N N 33 EAN "H2''" H N N 34 EAN "H7'" H N N 35 EAN "H7''" H N N 36 EAN "H6'" H N N 37 EAN "H8'" H N N 38 EAN "H8''" H N N 39 EAN H2 H N N 40 EAN H4 H N N 41 F4Q C8 C Y N 42 F4Q C2 C N N 43 F4Q C4 C Y N 44 F4Q C5 C Y N 45 F4Q C6 C N N 46 F4Q P P N N 47 F4Q O1P O N N 48 F4Q O2P O N N 49 F4Q "O5'" O N N 50 F4Q "C5'" C N R 51 F4Q "C4'" C N S 52 F4Q "O4'" O N N 53 F4Q "C1'" C N R 54 F4Q N9 N Y N 55 F4Q N7 N Y N 56 F4Q O6 O N N 57 F4Q N1 N N N 58 F4Q N2 N N N 59 F4Q N3 N N N 60 F4Q "C3'" C N S 61 F4Q "C2'" C N N 62 F4Q "C7'" C N N 63 F4Q "C6'" C N S 64 F4Q "C8'" C N N 65 F4Q "O3'" O N N 66 F4Q H8 H N N 67 F4Q H3 H N N 68 F4Q "H4'" H N N 69 F4Q "H1'" H N N 70 F4Q H1 H N N 71 F4Q H22 H N N 72 F4Q H21 H N N 73 F4Q "H2'" H N N 74 F4Q "H2''" H N N 75 F4Q "H7'" H N N 76 F4Q "H7''" H N N 77 F4Q "H6'" H N N 78 F4Q "H8'" H N N 79 F4Q "H8''" H N N 80 F4Q H4 H N N 81 F4Q OP3 O N N 82 F4Q H6 H N N 83 F7H "O5'" O N N 84 F7H "C5'" C N R 85 F7H "C4'" C N S 86 F7H "O4'" O N N 87 F7H "C1'" C N R 88 F7H N1 N N N 89 F7H C6 C N N 90 F7H C5 C N N 91 F7H C7 C N N 92 F7H C4 C N N 93 F7H N4 N N N 94 F7H N3 N N N 95 F7H C2 C N N 96 F7H O2 O N N 97 F7H "C3'" C N S 98 F7H "C2'" C N N 99 F7H "C7'" C N N 100 F7H "C6'" C N S 101 F7H "C8'" C N N 102 F7H "O3'" O N N 103 F7H "HO5'" H N N 104 F7H "H4'" H N N 105 F7H "H1'" H N N 106 F7H H6 H N N 107 F7H H71 H N N 108 F7H H72 H N N 109 F7H H73 H N N 110 F7H H41 H N N 111 F7H H42 H N N 112 F7H "H2'" H N N 113 F7H "H2''" H N N 114 F7H "H7'" H N N 115 F7H "H7''" H N N 116 F7H "H6'" H N N 117 F7H "H8'" H N N 118 F7H "H8''" H N N 119 F7H H1 H N N 120 F7K C8 C Y N 121 F7K C2 C N N 122 F7K C4 C Y N 123 F7K C5 C Y N 124 F7K C6 C N N 125 F7K "O5'" O N N 126 F7K "C5'" C N R 127 F7K "C4'" C N S 128 F7K "O4'" O N N 129 F7K "C1'" C N R 130 F7K N9 N Y N 131 F7K N7 N Y N 132 F7K O6 O N N 133 F7K N1 N N N 134 F7K N2 N N N 135 F7K N3 N N N 136 F7K "C3'" C N S 137 F7K "C2'" C N N 138 F7K "C7'" C N N 139 F7K "C6'" C N S 140 F7K "C8'" C N N 141 F7K "O3'" O N N 142 F7K H8 H N N 143 F7K "HO5'" H N N 144 F7K "H4'" H N N 145 F7K "H1'" H N N 146 F7K H1 H N N 147 F7K H21 H N N 148 F7K H22 H N N 149 F7K "H2''" H N N 150 F7K "H2'" H N N 151 F7K "H7''" H N N 152 F7K "H7'" H N N 153 F7K "H6'" H N N 154 F7K "H8''" H N N 155 F7K "H8'" H N N 156 F7K H2 H N N 157 TCJ P P N N 158 TCJ O1P O N N 159 TCJ O2P O N N 160 TCJ "O5'" O N N 161 TCJ "C5'" C N R 162 TCJ "C4'" C N S 163 TCJ "O4'" O N N 164 TCJ "C1'" C N R 165 TCJ N1 N N N 166 TCJ C6 C N N 167 TCJ C5 C N N 168 TCJ C7 C N N 169 TCJ C4 C N N 170 TCJ N4 N N N 171 TCJ N3 N N N 172 TCJ C2 C N N 173 TCJ O2 O N N 174 TCJ "C3'" C N S 175 TCJ "C2'" C N N 176 TCJ "C7'" C N N 177 TCJ "C6'" C N S 178 TCJ "C8'" C N N 179 TCJ "O3'" O N N 180 TCJ H2 H N N 181 TCJ "H4'" H N N 182 TCJ "H1'" H N N 183 TCJ H6 H N N 184 TCJ H73 H N N 185 TCJ H71 H N N 186 TCJ H72 H N N 187 TCJ H41 H N N 188 TCJ H42 H N N 189 TCJ "H2'" H N N 190 TCJ "H2''" H N N 191 TCJ "H7'" H N N 192 TCJ "H7''" H N N 193 TCJ "H6'" H N N 194 TCJ "H8'" H N N 195 TCJ "H8''" H N N 196 TCJ H3T H N N 197 TCJ OP3 O N N 198 TCJ H1 H N N 199 TCY O3P O N N 200 TCY O1P O N N 201 TCY P P N N 202 TCY O2P O N N 203 TCY "C8'" C N N 204 TCY "O5'" O N N 205 TCY "C5'" C N R 206 TCY "C6'" C N S 207 TCY "C4'" C N S 208 TCY "C3'" C N S 209 TCY "C7'" C N N 210 TCY "O3'" O N N 211 TCY "C2'" C N N 212 TCY "C1'" C N R 213 TCY "O4'" O N N 214 TCY N9 N Y N 215 TCY C4 C Y N 216 TCY N3 N Y N 217 TCY C2 C Y N 218 TCY N1 N Y N 219 TCY C6 C Y N 220 TCY N6 N N N 221 TCY C5 C Y N 222 TCY N7 N Y N 223 TCY C8 C Y N 224 TCY "H8'" H N N 225 TCY "H8'A" H N N 226 TCY "H6'" H N N 227 TCY "H4'" H N N 228 TCY "H7'" H N N 229 TCY "H7'A" H N N 230 TCY "HO3'" H N N 231 TCY "H2'" H N N 232 TCY "H2'A" H N N 233 TCY "H1'" H N N 234 TCY H2 H N N 235 TCY HN6 H N N 236 TCY HN6A H N N 237 TCY H8 H N N 238 TCY HO3P H N N 239 TCY HO2P H N N 240 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EAN O2 C2 doub N N 1 EAN O1P P doub N N 2 EAN "O4'" "C1'" sing N N 3 EAN "O4'" "C4'" sing N N 4 EAN C2 N3 sing N N 5 EAN C2 N1 sing N N 6 EAN "C1'" N1 sing N N 7 EAN "C1'" "C2'" sing N N 8 EAN N3 C4 sing N N 9 EAN N1 C6 sing N N 10 EAN P "O5'" sing N N 11 EAN P O2P sing N N 12 EAN C4 O4 doub N N 13 EAN C4 C5 sing N N 14 EAN C6 C5 doub N N 15 EAN C5 C7 sing N N 16 EAN "C4'" "C5'" sing N N 17 EAN "C4'" "C3'" sing N N 18 EAN "O5'" "C5'" sing N N 19 EAN "C2'" "C3'" sing N N 20 EAN "C5'" "C6'" sing N N 21 EAN "C5'" "C8'" sing N N 22 EAN "C3'" "O3'" sing N N 23 EAN "C3'" "C7'" sing N N 24 EAN "C6'" "C8'" sing N N 25 EAN "C6'" "C7'" sing N N 26 EAN P O3P sing N N 27 EAN C7 H73 sing N N 28 EAN C7 H71 sing N N 29 EAN C7 H72 sing N N 30 EAN C6 H6 sing N N 31 EAN O2P H1 sing N N 32 EAN "C4'" "H4'" sing N N 33 EAN "C1'" "H1'" sing N N 34 EAN N3 H3 sing N N 35 EAN "C2'" "H2'" sing N N 36 EAN "C2'" "H2''" sing N N 37 EAN "C7'" "H7'" sing N N 38 EAN "C7'" "H7''" sing N N 39 EAN "C6'" "H6'" sing N N 40 EAN "C8'" "H8'" sing N N 41 EAN "C8'" "H8''" sing N N 42 EAN "O3'" H2 sing N N 43 EAN O3P H4 sing N N 44 F4Q O1P P doub N N 45 F4Q "O4'" "C1'" sing N N 46 F4Q "O4'" "C4'" sing N N 47 F4Q P O2P sing N N 48 F4Q P "O5'" sing N N 49 F4Q "C1'" N9 sing N N 50 F4Q "C1'" "C2'" sing N N 51 F4Q N3 C2 doub N N 52 F4Q N3 C4 sing N N 53 F4Q N2 C2 sing N N 54 F4Q C2 N1 sing N N 55 F4Q N9 C4 sing Y N 56 F4Q N9 C8 sing Y N 57 F4Q C4 C5 doub Y N 58 F4Q C8 N7 doub Y N 59 F4Q N1 C6 sing N N 60 F4Q C5 C6 sing N N 61 F4Q C5 N7 sing Y N 62 F4Q C6 O6 doub N N 63 F4Q "O5'" "C5'" sing N N 64 F4Q "C4'" "C5'" sing N N 65 F4Q "C4'" "C3'" sing N N 66 F4Q "C2'" "C3'" sing N N 67 F4Q "C5'" "C6'" sing N N 68 F4Q "C5'" "C8'" sing N N 69 F4Q "C3'" "O3'" sing N N 70 F4Q "C3'" "C7'" sing N N 71 F4Q "C6'" "C8'" sing N N 72 F4Q "C6'" "C7'" sing N N 73 F4Q C8 H8 sing N N 74 F4Q O2P H3 sing N N 75 F4Q "C4'" "H4'" sing N N 76 F4Q "C1'" "H1'" sing N N 77 F4Q N1 H1 sing N N 78 F4Q N2 H22 sing N N 79 F4Q N2 H21 sing N N 80 F4Q "C2'" "H2'" sing N N 81 F4Q "C2'" "H2''" sing N N 82 F4Q "C7'" "H7'" sing N N 83 F4Q "C7'" "H7''" sing N N 84 F4Q "C6'" "H6'" sing N N 85 F4Q "C8'" "H8'" sing N N 86 F4Q "C8'" "H8''" sing N N 87 F4Q "O3'" H4 sing N N 88 F4Q P OP3 sing N N 89 F4Q OP3 H6 sing N N 90 F7H "O4'" "C1'" sing N N 91 F7H "O4'" "C4'" sing N N 92 F7H "C1'" N1 sing N N 93 F7H "C1'" "C2'" sing N N 94 F7H "O5'" "C5'" sing N N 95 F7H O2 C2 doub N N 96 F7H "C4'" "C5'" sing N N 97 F7H "C4'" "C3'" sing N N 98 F7H N1 C2 sing N N 99 F7H N1 C6 sing N N 100 F7H C2 N3 sing N N 101 F7H C6 C5 doub N N 102 F7H "C5'" "C8'" sing N N 103 F7H "C5'" "C6'" sing N N 104 F7H N3 C4 doub N N 105 F7H "C2'" "C3'" sing N N 106 F7H C5 C4 sing N N 107 F7H C5 C7 sing N N 108 F7H C4 N4 sing N N 109 F7H "C3'" "O3'" sing N N 110 F7H "C3'" "C7'" sing N N 111 F7H "C8'" "C6'" sing N N 112 F7H "C6'" "C7'" sing N N 113 F7H "O5'" "HO5'" sing N N 114 F7H "C4'" "H4'" sing N N 115 F7H "C1'" "H1'" sing N N 116 F7H C6 H6 sing N N 117 F7H C7 H71 sing N N 118 F7H C7 H72 sing N N 119 F7H C7 H73 sing N N 120 F7H N4 H41 sing N N 121 F7H N4 H42 sing N N 122 F7H "C2'" "H2'" sing N N 123 F7H "C2'" "H2''" sing N N 124 F7H "C7'" "H7'" sing N N 125 F7H "C7'" "H7''" sing N N 126 F7H "C6'" "H6'" sing N N 127 F7H "C8'" "H8'" sing N N 128 F7H "C8'" "H8''" sing N N 129 F7H "O3'" H1 sing N N 130 F7K "C6'" "C8'" sing N N 131 F7K "C6'" "C7'" sing N N 132 F7K "C6'" "C5'" sing N N 133 F7K "C8'" "C5'" sing N N 134 F7K "C7'" "C3'" sing N N 135 F7K "C5'" "O5'" sing N N 136 F7K "C5'" "C4'" sing N N 137 F7K "O3'" "C3'" sing N N 138 F7K "C3'" "C4'" sing N N 139 F7K "C3'" "C2'" sing N N 140 F7K O6 C6 doub N N 141 F7K "C4'" "O4'" sing N N 142 F7K N7 C5 sing Y N 143 F7K N7 C8 doub Y N 144 F7K C6 C5 sing N N 145 F7K C6 N1 sing N N 146 F7K "C2'" "C1'" sing N N 147 F7K C5 C4 doub Y N 148 F7K C8 N9 sing Y N 149 F7K N1 C2 sing N N 150 F7K C4 N9 sing Y N 151 F7K C4 N3 sing N N 152 F7K N9 "C1'" sing N N 153 F7K C2 N3 doub N N 154 F7K C2 N2 sing N N 155 F7K "O4'" "C1'" sing N N 156 F7K C8 H8 sing N N 157 F7K "O5'" "HO5'" sing N N 158 F7K "C4'" "H4'" sing N N 159 F7K "C1'" "H1'" sing N N 160 F7K N1 H1 sing N N 161 F7K N2 H21 sing N N 162 F7K N2 H22 sing N N 163 F7K "C2'" "H2''" sing N N 164 F7K "C2'" "H2'" sing N N 165 F7K "C7'" "H7''" sing N N 166 F7K "C7'" "H7'" sing N N 167 F7K "C6'" "H6'" sing N N 168 F7K "C8'" "H8''" sing N N 169 F7K "C8'" "H8'" sing N N 170 F7K "O3'" H2 sing N N 171 TCJ O2 C2 doub N N 172 TCJ N3 C2 sing N N 173 TCJ N3 C4 doub N N 174 TCJ C2 N1 sing N N 175 TCJ N4 C4 sing N N 176 TCJ C4 C5 sing N N 177 TCJ N1 "C1'" sing N N 178 TCJ N1 C6 sing N N 179 TCJ "C1'" "O4'" sing N N 180 TCJ "C1'" "C2'" sing N N 181 TCJ C5 C6 doub N N 182 TCJ C5 C7 sing N N 183 TCJ "O4'" "C4'" sing N N 184 TCJ O1P P doub N N 185 TCJ "C2'" "C3'" sing N N 186 TCJ P "O5'" sing N N 187 TCJ P O2P sing N N 188 TCJ "C4'" "C3'" sing N N 189 TCJ "C4'" "C5'" sing N N 190 TCJ "O5'" "C5'" sing N N 191 TCJ "C3'" "O3'" sing N N 192 TCJ "C3'" "C7'" sing N N 193 TCJ "C5'" "C6'" sing N N 194 TCJ "C5'" "C8'" sing N N 195 TCJ "C7'" "C6'" sing N N 196 TCJ "C6'" "C8'" sing N N 197 TCJ O2P H2 sing N N 198 TCJ "C4'" "H4'" sing N N 199 TCJ "C1'" "H1'" sing N N 200 TCJ C6 H6 sing N N 201 TCJ C7 H73 sing N N 202 TCJ C7 H71 sing N N 203 TCJ C7 H72 sing N N 204 TCJ N4 H41 sing N N 205 TCJ N4 H42 sing N N 206 TCJ "C2'" "H2'" sing N N 207 TCJ "C2'" "H2''" sing N N 208 TCJ "C7'" "H7'" sing N N 209 TCJ "C7'" "H7''" sing N N 210 TCJ "C6'" "H6'" sing N N 211 TCJ "C8'" "H8'" sing N N 212 TCJ "C8'" "H8''" sing N N 213 TCJ "O3'" H3T sing N N 214 TCJ P OP3 sing N N 215 TCJ OP3 H1 sing N N 216 TCY O3P P sing N N 217 TCY O1P P doub N N 218 TCY P O2P sing N N 219 TCY P "O5'" sing N N 220 TCY "C8'" "C5'" sing N N 221 TCY "C8'" "C6'" sing N N 222 TCY "O5'" "C5'" sing N N 223 TCY "C5'" "C6'" sing N N 224 TCY "C5'" "C4'" sing N N 225 TCY "C6'" "C7'" sing N N 226 TCY "C4'" "C3'" sing N N 227 TCY "C4'" "O4'" sing N N 228 TCY "C3'" "C7'" sing N N 229 TCY "C3'" "O3'" sing N N 230 TCY "C3'" "C2'" sing N N 231 TCY "C2'" "C1'" sing N N 232 TCY "C1'" "O4'" sing N N 233 TCY "C1'" N9 sing N N 234 TCY N9 C4 sing Y N 235 TCY N9 C8 sing Y N 236 TCY C4 N3 doub Y N 237 TCY C4 C5 sing Y N 238 TCY N3 C2 sing Y N 239 TCY C2 N1 doub Y N 240 TCY N1 C6 sing Y N 241 TCY C6 N6 sing N N 242 TCY C6 C5 doub Y N 243 TCY C5 N7 sing Y N 244 TCY N7 C8 doub Y N 245 TCY "C8'" "H8'" sing N N 246 TCY "C8'" "H8'A" sing N N 247 TCY "C6'" "H6'" sing N N 248 TCY "C4'" "H4'" sing N N 249 TCY "C7'" "H7'" sing N N 250 TCY "C7'" "H7'A" sing N N 251 TCY "O3'" "HO3'" sing N N 252 TCY "C2'" "H2'" sing N N 253 TCY "C2'" "H2'A" sing N N 254 TCY "C1'" "H1'" sing N N 255 TCY C2 H2 sing N N 256 TCY N6 HN6 sing N N 257 TCY N6 HN6A sing N N 258 TCY C8 H8 sing N N 259 TCY O3P HO3P sing N N 260 TCY O2P HO2P sing N N 261 # _ndb_struct_conf_na.entry_id 6GN4 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A F7H 1 1_555 B F4Q 10 1_555 0.215 -0.113 0.421 -2.157 -23.454 -0.968 1 A_F7H1:F4Q20_B A 1 ? B 20 ? 19 1 1 A EAN 2 1_555 B TCY 9 1_555 -0.041 -0.028 0.413 -0.364 -17.097 -6.709 2 A_EAN2:TCY19_B A 2 ? B 19 ? 20 1 1 A TCJ 3 1_555 B F4Q 8 1_555 0.167 -0.083 0.110 9.979 -23.398 -2.571 3 A_TCJ3:F4Q18_B A 3 ? B 18 ? 19 1 1 A F4Q 4 1_555 B TCJ 7 1_555 -0.064 -0.081 0.101 -6.987 -26.747 -0.470 4 A_F4Q4:TCJ17_B A 4 ? B 17 ? 19 1 1 A F4Q 5 1_555 B TCJ 6 1_555 0.089 -0.077 0.433 -7.687 -21.091 -1.119 5 A_F4Q5:TCJ16_B A 5 ? B 16 ? 19 1 1 A TCJ 6 1_555 B F4Q 5 1_555 -0.166 -0.024 0.279 -0.067 -19.263 -1.894 6 A_TCJ6:F4Q15_B A 6 ? B 15 ? 19 1 1 A EAN 7 1_555 B TCY 4 1_555 0.119 0.009 0.162 -0.450 -16.948 -4.513 7 A_EAN7:TCY14_B A 7 ? B 14 ? 20 1 1 A EAN 8 1_555 B TCY 3 1_555 -0.047 0.044 -0.182 4.709 -22.677 -4.754 8 A_EAN8:TCY13_B A 8 ? B 13 ? 20 1 1 A TCY 9 1_555 B EAN 2 1_555 0.144 0.026 0.214 4.620 -14.288 0.870 9 A_TCY9:EAN12_B A 9 ? B 12 ? 20 1 1 A TCJ 10 1_555 B F7K 1 1_555 0.408 0.042 -0.035 19.574 -19.409 3.366 10 A_TCJ10:F7K11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A F7H 1 1_555 B F4Q 10 1_555 A EAN 2 1_555 B TCY 9 1_555 -0.004 -1.607 3.305 0.477 -2.029 31.154 -2.591 0.100 3.400 -3.773 -0.888 31.222 1 AA_F7H1EAN2:TCY19F4Q20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A EAN 2 1_555 B TCY 9 1_555 A TCJ 3 1_555 B F4Q 8 1_555 0.480 -1.326 2.962 2.727 -1.704 35.312 -1.947 -0.420 3.048 -2.801 -4.484 35.454 2 AA_EAN2TCJ3:F4Q18TCY19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A TCJ 3 1_555 B F4Q 8 1_555 A F4Q 4 1_555 B TCJ 7 1_555 0.288 -1.250 3.649 1.018 14.338 40.054 -3.266 -0.288 3.053 20.164 -1.432 42.455 3 AA_TCJ3F4Q4:TCJ17F4Q18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A F4Q 4 1_555 B TCJ 7 1_555 A F4Q 5 1_555 B TCJ 6 1_555 -0.080 -1.824 3.264 -3.742 -1.169 35.491 -2.805 -0.416 3.312 -1.911 6.116 35.700 4 AA_F4Q4F4Q5:TCJ16TCJ17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A F4Q 5 1_555 B TCJ 6 1_555 A TCJ 6 1_555 B F4Q 5 1_555 -0.206 -2.136 3.089 0.965 -5.234 32.543 -2.880 0.526 3.374 -9.262 -1.708 32.964 5 AA_F4Q5TCJ6:F4Q15TCJ16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A TCJ 6 1_555 B F4Q 5 1_555 A EAN 7 1_555 B TCY 4 1_555 0.136 -1.650 3.463 1.440 -3.894 34.900 -2.102 0.009 3.623 -6.463 -2.391 35.138 6 AA_TCJ6EAN7:TCY14F4Q15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A EAN 7 1_555 B TCY 4 1_555 A EAN 8 1_555 B TCY 3 1_555 0.366 -1.483 3.140 4.524 5.803 34.082 -3.298 0.030 2.880 9.760 -7.608 34.844 7 AA_EAN7EAN8:TCY13TCY14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A EAN 8 1_555 B TCY 3 1_555 A TCY 9 1_555 B EAN 2 1_555 0.116 -1.417 3.125 -2.451 13.994 37.486 -3.489 -0.418 2.452 20.879 3.658 39.997 8 AA_EAN8TCY9:EAN12TCY13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A TCY 9 1_555 B EAN 2 1_555 A TCJ 10 1_555 B F7K 1 1_555 0.724 -1.872 3.054 -0.130 -3.227 31.893 -2.831 -1.335 3.220 -5.855 0.236 32.052 9 AA_TCY9TCJ10:F7K11EAN12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE II' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 6GN4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_