HEADER OXIDOREDUCTASE 30-MAY-18 6GNA TITLE CRYSTAL STRUCTURE OF A FERREDOXIN-FLAVIN THIOREDOXIN REDUCTASE FROM TITLE 2 CLOSTRIDIUM ACETOBUTYLICUM AT 1.3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM ATCC 824; SOURCE 3 ORGANISM_TAXID: 272562; SOURCE 4 GENE: CA_C3082; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOPROTEIN, THIOREDOXIN REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.M.BUEY,D.FERNANDEZ-JUSTEL,M.BALSERA REVDAT 3 17-JAN-24 6GNA 1 REMARK REVDAT 2 02-JAN-19 6GNA 1 JRNL REVDAT 1 12-DEC-18 6GNA 0 JRNL AUTH R.M.BUEY,D.FERNANDEZ-JUSTEL,J.M.DE PEREDA,J.L.REVUELTA, JRNL AUTH 2 P.SCHURMANN,B.B.BUCHANAN,M.BALSERA JRNL TITL FERREDOXIN-LINKED FLAVOENZYME DEFINES A FAMILY OF PYRIDINE JRNL TITL 2 NUCLEOTIDE-INDEPENDENT THIOREDOXIN REDUCTASES. JRNL REF PROC. NATL. ACAD. SCI. V. 115 12967 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30510005 JRNL DOI 10.1073/PNAS.1812781115 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2666: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 64662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 6214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4363 - 4.0226 0.99 4119 180 0.1501 0.1627 REMARK 3 2 4.0226 - 3.1933 0.99 4082 216 0.1367 0.1623 REMARK 3 3 3.1933 - 2.7897 0.99 4081 203 0.1631 0.2138 REMARK 3 4 2.7897 - 2.5347 0.99 4044 222 0.1538 0.1879 REMARK 3 5 2.5347 - 2.3531 0.99 4112 194 0.1480 0.1660 REMARK 3 6 2.3531 - 2.2143 0.99 4036 212 0.1515 0.1939 REMARK 3 7 2.2143 - 2.1034 0.99 4080 211 0.1545 0.1867 REMARK 3 8 2.1034 - 2.0119 0.99 3997 201 0.1580 0.1542 REMARK 3 9 2.0119 - 1.9344 0.99 4080 214 0.1640 0.2090 REMARK 3 10 1.9344 - 1.8677 0.99 4106 211 0.1632 0.1913 REMARK 3 11 1.8677 - 1.8093 0.97 3993 194 0.1779 0.2092 REMARK 3 12 1.8093 - 1.7576 0.97 3933 231 0.1795 0.2161 REMARK 3 13 1.7576 - 1.7113 0.98 4000 210 0.1808 0.1868 REMARK 3 14 1.7113 - 1.6695 0.97 4003 222 0.1889 0.2088 REMARK 3 15 1.6695 - 1.6316 0.99 4049 202 0.1901 0.2243 REMARK 3 16 1.6316 - 1.5969 0.97 3939 198 0.2081 0.2190 REMARK 3 17 1.5969 - 1.5649 0.98 4041 237 0.2185 0.2250 REMARK 3 18 1.5649 - 1.5354 0.97 3929 203 0.2450 0.2838 REMARK 3 19 1.5354 - 1.5080 0.98 4024 215 0.3064 0.3170 REMARK 3 20 1.5080 - 1.4824 0.96 3951 200 0.3088 0.3024 REMARK 3 21 1.4824 - 1.4585 0.97 3960 197 0.3035 0.3119 REMARK 3 22 1.4585 - 1.4361 0.96 3986 203 0.3291 0.3328 REMARK 3 23 1.4361 - 1.4149 0.97 3954 208 0.3670 0.3927 REMARK 3 24 1.4149 - 1.3950 0.96 3945 215 0.3953 0.4088 REMARK 3 25 1.3950 - 1.3761 0.96 3908 205 0.4329 0.4390 REMARK 3 26 1.3761 - 1.3583 0.96 3936 187 0.4303 0.4314 REMARK 3 27 1.3583 - 1.3413 0.96 3996 199 0.4890 0.4737 REMARK 3 28 1.3413 - 1.3251 0.96 3836 209 0.5237 0.4970 REMARK 3 29 1.3251 - 1.3097 0.95 3943 212 0.5658 0.4980 REMARK 3 30 1.3097 - 1.2950 0.90 3709 203 0.6115 0.6456 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2333 REMARK 3 ANGLE : 1.010 3157 REMARK 3 CHIRALITY : 0.074 350 REMARK 3 PLANARITY : 0.006 395 REMARK 3 DIHEDRAL : 17.128 860 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6743 14.0875 11.5024 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: 0.1799 REMARK 3 T33: 0.2146 T12: -0.0151 REMARK 3 T13: 0.0230 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.6208 L22: 1.6063 REMARK 3 L33: 3.0202 L12: 0.3257 REMARK 3 L13: 0.7588 L23: -0.8316 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: -0.1161 S13: 0.0107 REMARK 3 S21: 0.1262 S22: -0.0910 S23: 0.0201 REMARK 3 S31: -0.3096 S32: -0.0563 S33: 0.0015 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5088 6.1626 20.3138 REMARK 3 T TENSOR REMARK 3 T11: 0.2283 T22: 0.2096 REMARK 3 T33: 0.2469 T12: -0.0239 REMARK 3 T13: 0.0171 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.2433 L22: 1.2268 REMARK 3 L33: 2.9076 L12: -0.0106 REMARK 3 L13: 1.3065 L23: -0.4306 REMARK 3 S TENSOR REMARK 3 S11: 0.1051 S12: -0.1119 S13: -0.1581 REMARK 3 S21: 0.0879 S22: -0.0312 S23: -0.1025 REMARK 3 S31: 0.0828 S32: -0.0547 S33: 0.0053 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3463 5.3022 34.9666 REMARK 3 T TENSOR REMARK 3 T11: 0.2947 T22: 0.3751 REMARK 3 T33: 0.2780 T12: -0.0174 REMARK 3 T13: 0.0243 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 1.3176 L22: 0.9898 REMARK 3 L33: 0.4333 L12: 0.0379 REMARK 3 L13: 0.0920 L23: 0.0909 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.3488 S13: -0.2246 REMARK 3 S21: 0.0007 S22: -0.0526 S23: 0.0747 REMARK 3 S31: 0.2447 S32: -0.1826 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1987 5.4567 31.9996 REMARK 3 T TENSOR REMARK 3 T11: 0.2502 T22: 0.3400 REMARK 3 T33: 0.3437 T12: 0.0005 REMARK 3 T13: 0.0469 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 2.9215 L22: 1.3471 REMARK 3 L33: 1.8776 L12: -0.2776 REMARK 3 L13: 1.5905 L23: 0.2579 REMARK 3 S TENSOR REMARK 3 S11: 0.1411 S12: -0.2492 S13: -0.1436 REMARK 3 S21: -0.0670 S22: -0.0668 S23: -0.5040 REMARK 3 S31: 0.2065 S32: 0.2214 S33: 0.0018 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1652 -2.2426 11.2675 REMARK 3 T TENSOR REMARK 3 T11: 0.3229 T22: 0.1972 REMARK 3 T33: 0.2665 T12: -0.0142 REMARK 3 T13: -0.0338 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.5797 L22: 1.5850 REMARK 3 L33: 1.6235 L12: 0.1887 REMARK 3 L13: 0.2227 L23: -0.6654 REMARK 3 S TENSOR REMARK 3 S11: 0.1040 S12: 0.0210 S13: -0.1848 REMARK 3 S21: -0.0563 S22: 0.0033 S23: -0.1620 REMARK 3 S31: 0.5713 S32: 0.0643 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5561 4.4411 6.8171 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.2808 REMARK 3 T33: 0.2329 T12: -0.0752 REMARK 3 T13: -0.0077 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 1.0954 L22: 1.6822 REMARK 3 L33: 1.5920 L12: -0.5130 REMARK 3 L13: 0.0315 L23: 0.2299 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: 0.0691 S13: -0.2790 REMARK 3 S21: -0.0900 S22: 0.0650 S23: 0.1921 REMARK 3 S31: 0.3944 S32: -0.3841 S33: 0.0808 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GNA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64697 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.295 REMARK 200 RESOLUTION RANGE LOW (A) : 40.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.04253 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.80400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J60 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.5, 40% (V/V) PEG 300, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.61050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.47100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.61050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.47100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASN A 26 REMARK 465 ALA A 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 3 NE CZ NH1 NH2 REMARK 470 THR A 24 OG1 CG2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 SER A 35 OG REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 HIS A 113 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LYS A 205 CE NZ REMARK 470 LYS A 284 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 263 O HOH A 401 1.36 REMARK 500 HZ2 LYS A 40 O HOH A 419 1.59 REMARK 500 OH TYR A 263 O HOH A 401 1.98 REMARK 500 O HOH A 596 O HOH A 636 2.02 REMARK 500 O HOH A 434 O HOH A 532 2.03 REMARK 500 O HOH A 413 O HOH A 527 2.04 REMARK 500 O HOH A 405 O HOH A 484 2.05 REMARK 500 O HOH A 409 O HOH A 624 2.05 REMARK 500 O4 PGE A 302 O HOH A 402 2.11 REMARK 500 O HOH A 583 O HOH A 650 2.14 REMARK 500 O HOH A 448 O HOH A 612 2.17 REMARK 500 O HOH A 563 O HOH A 570 2.18 REMARK 500 O HOH A 599 O HOH A 668 2.18 REMARK 500 OH TYR A 50 O HOH A 403 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU A 89 HZ1 LYS A 174 3445 1.53 REMARK 500 O HOH A 614 O HOH A 621 4546 1.97 REMARK 500 O HOH A 631 O HOH A 646 2555 2.02 REMARK 500 O HOH A 672 O HOH A 681 2555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 59.77 -67.56 REMARK 500 LEU A 37 -78.27 77.38 REMARK 500 PRO A 45 -117.69 -69.28 REMARK 500 LYS A 97 -100.12 -124.87 REMARK 500 ALA A 108 42.53 -146.81 REMARK 500 ASP A 196 -90.76 -97.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 307 DBREF 6GNA A 1 285 UNP Q97EM8 Q97EM8_CLOAB 1 285 SEQADV 6GNA GLY A -2 UNP Q97EM8 EXPRESSION TAG SEQADV 6GNA SER A -1 UNP Q97EM8 EXPRESSION TAG SEQADV 6GNA HIS A 0 UNP Q97EM8 EXPRESSION TAG SEQRES 1 A 288 GLY SER HIS MET GLU ARG TYR ASP ILE ALA ILE ILE GLY SEQRES 2 A 288 SER GLY PRO ALA GLY LEU ALA SER ALA ILE ASN ALA LYS SEQRES 3 A 288 THR ARG ASN LYS SER VAL ILE VAL PHE GLY SER SER ASP SEQRES 4 A 288 LEU SER LYS LYS LEU THR LEU ALA PRO VAL ILE ASN ASN SEQRES 5 A 288 TYR LEU GLY PHE TYR GLY ILE ARG GLY ALA GLU LEU GLN SEQRES 6 A 288 GLU LYS PHE LYS GLU HIS ILE ASP ASN MET GLY ILE GLN SEQRES 7 A 288 ILE GLU ASN VAL LYS VAL ASN ASN ILE TYR ALA MET GLY SEQRES 8 A 288 GLU TYR PHE SER ILE MET THR SER LYS ASP THR TYR GLU SEQRES 9 A 288 ALA SER LYS VAL ILE LEU ALA MET GLY MET GLU HIS THR SEQRES 10 A 288 LYS PRO LEU LYS GLY GLU ASP LYS PHE LEU GLY ARG GLY SEQRES 11 A 288 VAL GLY TYR CYS ALA THR CYS ASP ALA PRO LEU TYR LYS SEQRES 12 A 288 GLY LYS ILE VAL THR ILE VAL GLY TYR ASN LYS GLU ALA SEQRES 13 A 288 GLU SER GLU ALA ASN TYR LEU ALA GLU LEU ALA SER LYS SEQRES 14 A 288 VAL TYR TYR VAL PRO ARG TYR LYS ASP GLU TYR GLN LEU SEQRES 15 A 288 VAL SER ALA VAL GLU ILE VAL LYS ASP VAL PRO VAL GLU SEQRES 16 A 288 ILE VAL GLY ASP LYS LYS VAL GLU LYS LEU LYS LEU LYS SEQRES 17 A 288 SER ARG GLU LEU GLU THR ASP GLY VAL PHE VAL LEU LYS SEQRES 18 A 288 ASP SER ALA PRO PRO GLU GLN LEU VAL PRO GLY LEU TYR SEQRES 19 A 288 VAL GLU ASP GLY HIS ILE LYS VAL ASN ARG LYS MET GLU SEQRES 20 A 288 THR ASN ILE ASP GLY CYS TYR ALA ALA GLY ASP CYS THR SEQRES 21 A 288 GLY LYS PRO TYR GLN TYR MET LYS ALA VAL GLY GLU GLY SEQRES 22 A 288 GLN VAL ALA ALA LEU ASN ALA VAL GLU LYS LEU TYR THR SEQRES 23 A 288 LYS ALA HET FAD A 300 83 HET PGE A 301 24 HET PGE A 302 24 HET PEG A 303 17 HET PEG A 304 17 HET PEG A 305 17 HET ACT A 306 7 HET ACT A 307 7 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 PGE 2(C6 H14 O4) FORMUL 5 PEG 3(C4 H10 O3) FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 10 HOH *285(H2 O) HELIX 1 AA1 GLY A 12 LYS A 23 1 12 HELIX 2 AA2 SER A 38 ALA A 44 1 7 HELIX 3 AA3 ARG A 57 MET A 72 1 16 HELIX 4 AA4 CYS A 131 ALA A 136 1 6 HELIX 5 AA5 PRO A 137 LYS A 140 5 4 HELIX 6 AA6 LYS A 151 ALA A 161 1 11 HELIX 7 AA7 PRO A 222 VAL A 227 1 6 HELIX 8 AA8 GLY A 254 GLY A 258 5 5 HELIX 9 AA9 GLN A 262 LYS A 284 1 23 SHEET 1 AA1 6 ILE A 76 GLU A 77 0 SHEET 2 AA1 6 VAL A 29 PHE A 32 1 N VAL A 31 O GLU A 77 SHEET 3 AA1 6 MET A 1 ILE A 9 1 N ILE A 8 O PHE A 32 SHEET 4 AA1 6 THR A 99 LEU A 107 1 O ILE A 106 N ILE A 9 SHEET 5 AA1 6 PHE A 91 THR A 95 -1 N ILE A 93 O TYR A 100 SHEET 6 AA1 6 VAL A 81 ALA A 86 -1 N ASN A 83 O MET A 94 SHEET 1 AA2 5 ILE A 76 GLU A 77 0 SHEET 2 AA2 5 VAL A 29 PHE A 32 1 N VAL A 31 O GLU A 77 SHEET 3 AA2 5 MET A 1 ILE A 9 1 N ILE A 8 O PHE A 32 SHEET 4 AA2 5 THR A 99 LEU A 107 1 O ILE A 106 N ILE A 9 SHEET 5 AA2 5 CYS A 250 ALA A 252 1 O TYR A 251 N LEU A 107 SHEET 1 AA3 5 VAL A 128 GLY A 129 0 SHEET 2 AA3 5 GLY A 213 LEU A 217 1 O VAL A 216 N GLY A 129 SHEET 3 AA3 5 ILE A 143 GLY A 148 1 N VAL A 147 O PHE A 215 SHEET 4 AA3 5 LYS A 166 PRO A 171 1 O VAL A 170 N ILE A 146 SHEET 5 AA3 5 VAL A 183 ILE A 185 1 O GLU A 184 N TYR A 169 SHEET 1 AA4 3 PRO A 190 GLY A 195 0 SHEET 2 AA4 3 VAL A 199 LEU A 204 -1 O LYS A 203 N VAL A 191 SHEET 3 AA4 3 GLU A 208 GLU A 210 -1 O LEU A 209 N LEU A 202 SHEET 1 AA5 2 VAL A 232 GLU A 233 0 SHEET 2 AA5 2 HIS A 236 ILE A 237 -1 O HIS A 236 N GLU A 233 SSBOND 1 CYS A 131 CYS A 134 1555 1555 2.04 CISPEP 1 LYS A 259 PRO A 260 0 -5.74 SITE 1 AC1 31 GLY A 10 SER A 11 GLY A 12 PRO A 13 SITE 2 AC1 31 ALA A 14 GLY A 33 LEU A 37 SER A 38 SITE 3 AC1 31 LYS A 40 ASN A 49 VAL A 79 VAL A 81 SITE 4 AC1 31 MET A 109 GLY A 110 ASP A 219 SER A 220 SITE 5 AC1 31 GLY A 254 ASP A 255 TYR A 261 GLN A 262 SITE 6 AC1 31 TYR A 263 PGE A 301 HOH A 401 HOH A 419 SITE 7 AC1 31 HOH A 431 HOH A 445 HOH A 451 HOH A 491 SITE 8 AC1 31 HOH A 496 HOH A 509 HOH A 540 SITE 1 AC2 7 GLY A 33 ASN A 78 LYS A 80 ASP A 219 SITE 2 AC2 7 FAD A 300 HOH A 463 HOH A 560 SITE 1 AC3 8 GLU A 60 LYS A 64 GLU A 67 TYR A 231 SITE 2 AC3 8 PEG A 305 HOH A 402 HOH A 413 HOH A 527 SITE 1 AC4 7 ARG A 3 TYR A 4 ASP A 5 TYR A 90 SITE 2 AC4 7 GLU A 101 SER A 103 LYS A 174 SITE 1 AC5 3 TYR A 149 LYS A 174 ASP A 175 SITE 1 AC6 8 LYS A 64 GLU A 67 LYS A 238 GLU A 244 SITE 2 AC6 8 THR A 245 PGE A 302 HOH A 402 HOH A 476 SITE 1 AC7 4 LEU A 43 ALA A 44 PRO A 45 HOH A 570 SITE 1 AC8 4 GLU A 89 ARG A 172 TYR A 173 LYS A 174 CRYST1 83.221 40.942 81.093 90.00 103.76 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012016 0.000000 0.002942 0.00000 SCALE2 0.000000 0.024425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012696 0.00000