HEADER TRANSFERASE 30-MAY-18 6GNE TITLE CATALYTIC DOMAIN OF STARCH SYNTHASE IV FROM ARABIDOPSIS THALIANA BOUND TITLE 2 TO ADP AND ACARBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATSS4,SOLUBLE STARCH SYNTHASE IV,SSIV; COMPND 5 EC: 2.4.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: SS4, AT4G18240, T9A21.90; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYL TRANSFERASE, STARCH SYNTHASE, ACARBOSE, ADP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.CUESTA-SEIJO,C.RUZANSKI,K.KRUCEWICZ,A.STRIEBECK,M.M.PALCIC REVDAT 4 17-JAN-24 6GNE 1 HETSYN REVDAT 3 29-JUL-20 6GNE 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 29-AUG-18 6GNE 1 JRNL REVDAT 1 25-JUL-18 6GNE 0 JRNL AUTH M.M.NIELSEN,C.RUZANSKI,K.KRUCEWICZ,A.STRIEBECK,U.CENCI, JRNL AUTH 2 S.G.BALL,M.M.PALCIC,J.A.CUESTA-SEIJO JRNL TITL CRYSTAL STRUCTURES OF THECATALYTICDOMAIN OFARABIDOPSIS JRNL TITL 2 THALIANASTARCH SYNTHASE IV, OF GRANULE BOUND STARCH SYNTHASE JRNL TITL 3 FROM CLG1 AND OF GRANULE BOUND STARCH SYNTHASE I JRNL TITL 4 OFCYANOPHORA PARADOXAILLUSTRATE SUBSTRATE RECOGNITION IN JRNL TITL 5 STARCH SYNTHASES. JRNL REF FRONT PLANT SCI V. 9 1138 2018 JRNL REFN ESSN 1664-462X JRNL PMID 30123236 JRNL DOI 10.3389/FPLS.2018.01138 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 31707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1635 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7859 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 165 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : 1.56000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.373 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8233 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7432 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11166 ; 1.555 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17270 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 985 ; 6.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 392 ;35.974 ;23.673 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1352 ;17.085 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;17.656 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1219 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9071 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1757 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3946 ; 1.310 ; 2.944 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3945 ; 1.310 ; 2.943 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4929 ; 2.255 ; 4.412 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4930 ; 2.255 ; 4.412 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4287 ; 1.453 ; 3.143 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4287 ; 1.453 ; 3.143 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6238 ; 2.490 ; 4.651 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 33953 ; 5.492 ;55.486 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 33951 ; 5.492 ;55.478 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 23 514 B 23 514 32142 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 515 REMARK 3 ORIGIN FOR THE GROUP (A): -28.8901 15.0504 -11.2553 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: 0.0187 REMARK 3 T33: 0.0969 T12: -0.0035 REMARK 3 T13: 0.0092 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.8921 L22: 1.7420 REMARK 3 L33: 1.3736 L12: -0.2905 REMARK 3 L13: 0.5871 L23: -0.2323 REMARK 3 S TENSOR REMARK 3 S11: -0.0732 S12: -0.0767 S13: -0.0573 REMARK 3 S21: 0.1782 S22: 0.0735 S23: -0.2969 REMARK 3 S31: 0.0216 S32: 0.0705 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 516 REMARK 3 ORIGIN FOR THE GROUP (A): -90.4700 25.8808 -8.1157 REMARK 3 T TENSOR REMARK 3 T11: 0.0609 T22: 0.0214 REMARK 3 T33: 0.0155 T12: 0.0166 REMARK 3 T13: 0.0267 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.8939 L22: 1.2451 REMARK 3 L33: 1.2487 L12: -0.6408 REMARK 3 L13: 0.5423 L23: 0.0376 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: -0.1794 S13: -0.1013 REMARK 3 S21: -0.0722 S22: 0.0812 S23: 0.0192 REMARK 3 S31: 0.0229 S32: -0.0217 S33: 0.0368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1200010244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 200.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2QZS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LI2SO4, 0.1 M BIS-TRIS PH 5.5, REMARK 280 25% PEG3350, ZNCL2, ADP, ACARBOSE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 64.88000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 83.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 83.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 16 REMARK 465 VAL A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 PRO A 20 REMARK 465 THR A 21 REMARK 465 SER A 22 REMARK 465 ALA A 516 REMARK 465 ARG A 517 REMARK 465 ALA A 518 REMARK 465 VAL A 519 REMARK 465 PRO A 520 REMARK 465 ASN A 521 REMARK 465 ARG A 522 REMARK 465 THR A 523 REMARK 465 LEU B 16 REMARK 465 VAL B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 PRO B 20 REMARK 465 THR B 21 REMARK 465 SER B 22 REMARK 465 ARG B 517 REMARK 465 ALA B 518 REMARK 465 VAL B 519 REMARK 465 PRO B 520 REMARK 465 ASN B 521 REMARK 465 ARG B 522 REMARK 465 THR B 523 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 515 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 515 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GLC D 1 O2 GLC D 2 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 56 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 215 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 115 64.31 -115.02 REMARK 500 ASP A 161 179.55 65.04 REMARK 500 ASN A 191 108.83 -162.26 REMARK 500 ARG A 218 -108.86 -124.70 REMARK 500 HIS A 268 30.63 -96.76 REMARK 500 ASP A 300 95.06 -162.05 REMARK 500 GLN A 302 -61.99 -29.90 REMARK 500 PRO A 408 54.63 -92.70 REMARK 500 CYS A 414 -66.72 -140.49 REMARK 500 ASP B 161 179.34 64.52 REMARK 500 ASN B 191 108.48 -162.27 REMARK 500 ARG B 218 -110.32 -123.55 REMARK 500 ASP B 221 -143.16 -69.74 REMARK 500 SER B 223 -79.93 -9.23 REMARK 500 SER B 224 -77.33 52.75 REMARK 500 HIS B 268 30.64 -94.81 REMARK 500 PRO B 408 54.47 -92.36 REMARK 500 CYS B 414 -66.48 -141.78 REMARK 500 ARG B 515 85.17 -54.66 REMARK 500 REMARK 500 REMARK: NULL DBREF 6GNE A 16 523 UNP Q0WVX5 SSY4_ARATH 533 1040 DBREF 6GNE B 16 523 UNP Q0WVX5 SSY4_ARATH 533 1040 SEQRES 1 A 508 LEU VAL SER SER PRO THR SER SER GLY LEU TYR VAL VAL SEQRES 2 A 508 HIS ILE ALA ALA GLU MET ALA PRO VAL ALA LYS VAL GLY SEQRES 3 A 508 GLY LEU GLY ASP VAL VAL ALA GLY LEU GLY LYS ALA LEU SEQRES 4 A 508 GLN ARG LYS GLY HIS LEU VAL GLU ILE ILE LEU PRO LYS SEQRES 5 A 508 TYR ASP CYS MET GLN TYR ASP ARG VAL ARG ASP LEU ARG SEQRES 6 A 508 ALA LEU ASP THR VAL VAL GLU SER TYR PHE ASP GLY LYS SEQRES 7 A 508 LEU TYR LYS ASN LYS ILE TRP ILE GLY THR VAL GLU GLY SEQRES 8 A 508 LEU PRO VAL HIS PHE ILE GLU PRO GLN HIS PRO SER LYS SEQRES 9 A 508 PHE PHE TRP ARG GLY GLN PHE TYR GLY GLU GLN ASP ASP SEQRES 10 A 508 PHE ARG ARG PHE SER TYR PHE SER ARG ALA ALA LEU GLU SEQRES 11 A 508 LEU LEU LEU GLN SER GLY LYS LYS PRO ASP ILE ILE HIS SEQRES 12 A 508 CYS HIS ASP TRP GLN THR ALA PHE VAL ALA PRO LEU TYR SEQRES 13 A 508 TRP ASP LEU TYR ALA PRO LYS GLY LEU ASP SER ALA ARG SEQRES 14 A 508 ILE CYS PHE THR CYS HIS ASN PHE GLU TYR GLN GLY THR SEQRES 15 A 508 ALA SER ALA SER GLU LEU GLY SER CYS GLY LEU ASP VAL SEQRES 16 A 508 ASN GLN LEU ASN ARG PRO ASP ARG MET GLN ASP HIS SER SEQRES 17 A 508 SER GLY ASP ARG VAL ASN PRO VAL LYS GLY ALA ILE ILE SEQRES 18 A 508 PHE SER ASN ILE VAL THR THR VAL SER PRO THR TYR ALA SEQRES 19 A 508 GLN GLU VAL ARG THR ALA GLU GLY GLY LYS GLY LEU HIS SEQRES 20 A 508 SER THR LEU ASN PHE HIS SER LYS LYS PHE ILE GLY ILE SEQRES 21 A 508 LEU ASN GLY ILE ASP THR ASP SER TRP ASN PRO ALA THR SEQRES 22 A 508 ASP PRO PHE LEU LYS ALA GLN PHE ASN ALA LYS ASP LEU SEQRES 23 A 508 GLN GLY LYS GLU GLU ASN LYS HIS ALA LEU ARG LYS GLN SEQRES 24 A 508 LEU GLY LEU SER SER ALA GLU SER ARG ARG PRO LEU VAL SEQRES 25 A 508 GLY CYS ILE THR ARG LEU VAL PRO GLN LYS GLY VAL HIS SEQRES 26 A 508 LEU ILE ARG HIS ALA ILE TYR ARG THR LEU GLU LEU GLY SEQRES 27 A 508 GLY GLN PHE VAL LEU LEU GLY SER SER PRO VAL PRO HIS SEQRES 28 A 508 ILE GLN ARG GLU PHE GLU GLY ILE GLU GLN GLN PHE LYS SEQRES 29 A 508 SER HIS ASP HIS VAL ARG LEU LEU LEU LYS TYR ASP GLU SEQRES 30 A 508 ALA LEU SER HIS THR ILE TYR ALA ALA SER ASP LEU PHE SEQRES 31 A 508 ILE ILE PRO SER ILE PHE GLU PRO CYS GLY LEU THR GLN SEQRES 32 A 508 MET ILE ALA MET ARG TYR GLY SER ILE PRO ILE ALA ARG SEQRES 33 A 508 LYS THR GLY GLY LEU ASN ASP SER VAL PHE ASP ILE ASP SEQRES 34 A 508 ASP ASP THR ILE PRO THR GLN PHE GLN ASN GLY PHE THR SEQRES 35 A 508 PHE GLN THR ALA ASP GLU GLN GLY PHE ASN TYR ALA LEU SEQRES 36 A 508 GLU ARG ALA PHE ASN HIS TYR LYS LYS ASP GLU GLU LYS SEQRES 37 A 508 TRP MET ARG LEU VAL GLU LYS VAL MET SER ILE ASP PHE SEQRES 38 A 508 SER TRP GLY SER SER ALA THR GLN TYR GLU GLU LEU TYR SEQRES 39 A 508 THR ARG SER VAL SER ARG ALA ARG ALA VAL PRO ASN ARG SEQRES 40 A 508 THR SEQRES 1 B 508 LEU VAL SER SER PRO THR SER SER GLY LEU TYR VAL VAL SEQRES 2 B 508 HIS ILE ALA ALA GLU MET ALA PRO VAL ALA LYS VAL GLY SEQRES 3 B 508 GLY LEU GLY ASP VAL VAL ALA GLY LEU GLY LYS ALA LEU SEQRES 4 B 508 GLN ARG LYS GLY HIS LEU VAL GLU ILE ILE LEU PRO LYS SEQRES 5 B 508 TYR ASP CYS MET GLN TYR ASP ARG VAL ARG ASP LEU ARG SEQRES 6 B 508 ALA LEU ASP THR VAL VAL GLU SER TYR PHE ASP GLY LYS SEQRES 7 B 508 LEU TYR LYS ASN LYS ILE TRP ILE GLY THR VAL GLU GLY SEQRES 8 B 508 LEU PRO VAL HIS PHE ILE GLU PRO GLN HIS PRO SER LYS SEQRES 9 B 508 PHE PHE TRP ARG GLY GLN PHE TYR GLY GLU GLN ASP ASP SEQRES 10 B 508 PHE ARG ARG PHE SER TYR PHE SER ARG ALA ALA LEU GLU SEQRES 11 B 508 LEU LEU LEU GLN SER GLY LYS LYS PRO ASP ILE ILE HIS SEQRES 12 B 508 CYS HIS ASP TRP GLN THR ALA PHE VAL ALA PRO LEU TYR SEQRES 13 B 508 TRP ASP LEU TYR ALA PRO LYS GLY LEU ASP SER ALA ARG SEQRES 14 B 508 ILE CYS PHE THR CYS HIS ASN PHE GLU TYR GLN GLY THR SEQRES 15 B 508 ALA SER ALA SER GLU LEU GLY SER CYS GLY LEU ASP VAL SEQRES 16 B 508 ASN GLN LEU ASN ARG PRO ASP ARG MET GLN ASP HIS SER SEQRES 17 B 508 SER GLY ASP ARG VAL ASN PRO VAL LYS GLY ALA ILE ILE SEQRES 18 B 508 PHE SER ASN ILE VAL THR THR VAL SER PRO THR TYR ALA SEQRES 19 B 508 GLN GLU VAL ARG THR ALA GLU GLY GLY LYS GLY LEU HIS SEQRES 20 B 508 SER THR LEU ASN PHE HIS SER LYS LYS PHE ILE GLY ILE SEQRES 21 B 508 LEU ASN GLY ILE ASP THR ASP SER TRP ASN PRO ALA THR SEQRES 22 B 508 ASP PRO PHE LEU LYS ALA GLN PHE ASN ALA LYS ASP LEU SEQRES 23 B 508 GLN GLY LYS GLU GLU ASN LYS HIS ALA LEU ARG LYS GLN SEQRES 24 B 508 LEU GLY LEU SER SER ALA GLU SER ARG ARG PRO LEU VAL SEQRES 25 B 508 GLY CYS ILE THR ARG LEU VAL PRO GLN LYS GLY VAL HIS SEQRES 26 B 508 LEU ILE ARG HIS ALA ILE TYR ARG THR LEU GLU LEU GLY SEQRES 27 B 508 GLY GLN PHE VAL LEU LEU GLY SER SER PRO VAL PRO HIS SEQRES 28 B 508 ILE GLN ARG GLU PHE GLU GLY ILE GLU GLN GLN PHE LYS SEQRES 29 B 508 SER HIS ASP HIS VAL ARG LEU LEU LEU LYS TYR ASP GLU SEQRES 30 B 508 ALA LEU SER HIS THR ILE TYR ALA ALA SER ASP LEU PHE SEQRES 31 B 508 ILE ILE PRO SER ILE PHE GLU PRO CYS GLY LEU THR GLN SEQRES 32 B 508 MET ILE ALA MET ARG TYR GLY SER ILE PRO ILE ALA ARG SEQRES 33 B 508 LYS THR GLY GLY LEU ASN ASP SER VAL PHE ASP ILE ASP SEQRES 34 B 508 ASP ASP THR ILE PRO THR GLN PHE GLN ASN GLY PHE THR SEQRES 35 B 508 PHE GLN THR ALA ASP GLU GLN GLY PHE ASN TYR ALA LEU SEQRES 36 B 508 GLU ARG ALA PHE ASN HIS TYR LYS LYS ASP GLU GLU LYS SEQRES 37 B 508 TRP MET ARG LEU VAL GLU LYS VAL MET SER ILE ASP PHE SEQRES 38 B 508 SER TRP GLY SER SER ALA THR GLN TYR GLU GLU LEU TYR SEQRES 39 B 508 THR ARG SER VAL SER ARG ALA ARG ALA VAL PRO ASN ARG SEQRES 40 B 508 THR HET GLC C 1 12 HET GLC C 2 11 HET AC1 C 3 21 HET GLC D 1 12 HET GLC D 2 11 HET GLC E 1 12 HET GLC E 2 11 HET AC1 E 3 21 HET ADP A 601 27 HET ADP B 601 27 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM AC1 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETNAM 2 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETNAM 3 AC1 GLUCOPYRANOSE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN AC1 6-METHYL-5-(4,5,6-TRIHYDROXY-3-HYDROXYMETHYL-CYCLOHEX- HETSYN 2 AC1 2-ENYLAMINO)-TETRAHYDRO-PYRAN-2,3,4-TRIOL; 4,6- HETSYN 3 AC1 DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETSYN 4 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETSYN 5 AC1 GLUCOSE; 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6- HETSYN 6 AC1 TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}- HETSYN 7 AC1 D-GLUCOSE; 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6- HETSYN 8 AC1 TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}- HETSYN 9 AC1 GLUCOSE FORMUL 3 GLC 6(C6 H12 O6) FORMUL 3 AC1 2(C13 H23 N O8) FORMUL 6 ADP 2(C10 H15 N5 O10 P2) FORMUL 8 HOH *115(H2 O) HELIX 1 AA1 GLY A 41 LYS A 57 1 17 HELIX 2 AA2 GLN A 72 ASP A 74 5 3 HELIX 3 AA3 ASP A 131 SER A 150 1 20 HELIX 4 AA4 ASP A 161 PHE A 166 1 6 HELIX 5 AA5 PHE A 166 TYR A 175 1 10 HELIX 6 AA6 ALA A 176 GLY A 179 5 4 HELIX 7 AA7 SER A 201 SER A 205 5 5 HELIX 8 AA8 ASP A 209 ASN A 214 1 6 HELIX 9 AA9 ASN A 229 SER A 238 1 10 HELIX 10 AB1 SER A 245 THR A 254 1 10 HELIX 11 AB2 THR A 254 LYS A 259 1 6 HELIX 12 AB3 LEU A 261 HIS A 268 1 8 HELIX 13 AB4 LEU A 301 GLY A 316 1 16 HELIX 14 AB5 VAL A 334 LYS A 337 5 4 HELIX 15 AB6 GLY A 338 LEU A 352 1 15 HELIX 16 AB7 VAL A 364 PHE A 378 1 15 HELIX 17 AB8 ASP A 391 SER A 402 1 12 HELIX 18 AB9 LEU A 416 TYR A 424 1 9 HELIX 19 AC1 THR A 433 VAL A 440 1 8 HELIX 20 AC2 ASP A 462 ASP A 480 1 19 HELIX 21 AC3 ASP A 480 SER A 493 1 14 HELIX 22 AC4 TRP A 498 ARG A 515 1 18 HELIX 23 AC5 GLY B 41 LYS B 57 1 17 HELIX 24 AC6 GLN B 72 VAL B 76 5 5 HELIX 25 AC7 ASP B 131 SER B 150 1 20 HELIX 26 AC8 TRP B 162 ALA B 165 5 4 HELIX 27 AC9 PHE B 166 TYR B 175 1 10 HELIX 28 AD1 ALA B 176 GLY B 179 5 4 HELIX 29 AD2 SER B 201 SER B 205 5 5 HELIX 30 AD3 ASP B 209 ASN B 214 1 6 HELIX 31 AD4 ASN B 229 SER B 238 1 10 HELIX 32 AD5 SER B 245 THR B 254 1 10 HELIX 33 AD6 THR B 254 LYS B 259 1 6 HELIX 34 AD7 LEU B 261 HIS B 268 1 8 HELIX 35 AD8 LEU B 301 GLY B 316 1 16 HELIX 36 AD9 VAL B 334 LYS B 337 5 4 HELIX 37 AE1 GLY B 338 LEU B 352 1 15 HELIX 38 AE2 VAL B 364 PHE B 378 1 15 HELIX 39 AE3 ASP B 391 SER B 402 1 12 HELIX 40 AE4 LEU B 416 TYR B 424 1 9 HELIX 41 AE5 THR B 433 VAL B 440 1 8 HELIX 42 AE6 ASP B 462 ASP B 480 1 19 HELIX 43 AE7 ASP B 480 SER B 493 1 14 HELIX 44 AE8 TRP B 498 ARG B 515 1 18 SHEET 1 AA1 9 VAL A 76 PHE A 90 0 SHEET 2 AA1 9 LYS A 93 VAL A 104 -1 O ILE A 99 N LEU A 82 SHEET 3 AA1 9 LEU A 107 GLN A 115 -1 O GLU A 113 N LYS A 98 SHEET 4 AA1 9 LEU A 60 PRO A 66 1 N LEU A 65 O HIS A 110 SHEET 5 AA1 9 TYR A 26 ILE A 30 1 N HIS A 29 O GLU A 62 SHEET 6 AA1 9 ILE A 156 HIS A 160 1 O HIS A 158 N VAL A 28 SHEET 7 AA1 9 ARG A 184 CYS A 189 1 O CYS A 186 N CYS A 159 SHEET 8 AA1 9 ILE A 240 THR A 243 1 O THR A 242 N PHE A 187 SHEET 9 AA1 9 PHE A 272 GLY A 274 1 O ILE A 273 N VAL A 241 SHEET 1 AA2 2 ALA A 198 SER A 199 0 SHEET 2 AA2 2 ARG A 227 VAL A 228 -1 O VAL A 228 N ALA A 198 SHEET 1 AA3 6 VAL A 384 LEU A 387 0 SHEET 2 AA3 6 GLN A 355 SER A 361 1 N LEU A 358 O LEU A 387 SHEET 3 AA3 6 LEU A 326 ARG A 332 1 N CYS A 329 O LEU A 359 SHEET 4 AA3 6 LEU A 404 ILE A 407 1 O LEU A 404 N GLY A 328 SHEET 5 AA3 6 ILE A 427 ARG A 431 1 O ILE A 429 N ILE A 407 SHEET 6 AA3 6 PHE A 456 PHE A 458 1 O PHE A 456 N PRO A 428 SHEET 1 AA4 3 ARG B 77 ALA B 81 0 SHEET 2 AA4 3 LYS B 93 VAL B 104 -1 O THR B 103 N ARG B 77 SHEET 3 AA4 3 VAL B 86 PHE B 90 -1 N SER B 88 O TYR B 95 SHEET 1 AA5 9 ARG B 77 ALA B 81 0 SHEET 2 AA5 9 LYS B 93 VAL B 104 -1 O THR B 103 N ARG B 77 SHEET 3 AA5 9 LEU B 107 PRO B 114 -1 O GLU B 113 N LYS B 98 SHEET 4 AA5 9 LEU B 60 PRO B 66 1 N LEU B 65 O HIS B 110 SHEET 5 AA5 9 TYR B 26 ILE B 30 1 N HIS B 29 O GLU B 62 SHEET 6 AA5 9 ILE B 156 HIS B 160 1 O HIS B 158 N VAL B 28 SHEET 7 AA5 9 ARG B 184 CYS B 189 1 O CYS B 186 N CYS B 159 SHEET 8 AA5 9 ILE B 240 THR B 243 1 O THR B 242 N PHE B 187 SHEET 9 AA5 9 PHE B 272 GLY B 274 1 O ILE B 273 N VAL B 241 SHEET 1 AA6 2 ALA B 198 SER B 199 0 SHEET 2 AA6 2 ARG B 227 VAL B 228 -1 O VAL B 228 N ALA B 198 SHEET 1 AA7 6 VAL B 384 LEU B 387 0 SHEET 2 AA7 6 GLN B 355 SER B 361 1 N LEU B 358 O LEU B 387 SHEET 3 AA7 6 LEU B 326 ARG B 332 1 N CYS B 329 O LEU B 359 SHEET 4 AA7 6 LEU B 404 ILE B 407 1 O LEU B 404 N GLY B 328 SHEET 5 AA7 6 ILE B 427 ARG B 431 1 O ILE B 429 N ILE B 407 SHEET 6 AA7 6 PHE B 456 PHE B 458 1 O PHE B 456 N ALA B 430 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.42 LINK O4 GLC C 2 C1 AC1 C 3 1555 1555 1.43 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.41 LINK O4 GLC E 1 C1 GLC E 2 1555 1555 1.43 LINK O4 GLC E 2 C1 AC1 E 3 1555 1555 1.43 CISPEP 1 ALA A 35 PRO A 36 0 3.40 CISPEP 2 ALA B 35 PRO B 36 0 -1.17 CRYST1 129.760 166.940 47.940 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007707 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020859 0.00000