HEADER TRANSFERASE 31-MAY-18 6GNT TITLE CRYSTAL STRUCTURE OF LEISHMANIA MAJOR N-MYRISTOYLTRANSFERASE (NMT) TITLE 2 WITH BOUND MYRISTOYL-COA AND A QUIONLINYL ARYL SULPHONAMIDE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.97; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: NMT, LMJF_32_0080; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACYLTRANSFERASE, TRANSFERASE, DRUG DISCOVERY EXPDTA X-RAY DIFFRACTION AUTHOR D.A.ROBINSON,J.R.HARRISON,S.BRAND,V.C.SMITH,S.THOMPSON,A.SMITH, AUTHOR 2 K.DAVIES,N.Y.MOK,L.S.TORRIE,I.COLLIE,I.HALLYBURTON,S.NORVAL, AUTHOR 3 F.R.C.SIMEONS,L.STOJANOVSKI,J.A.FREARSON,R.BRENK,P.G.WYATT, AUTHOR 4 I.H.GILBERT,K.D.READ REVDAT 3 17-JAN-24 6GNT 1 REMARK REVDAT 2 10-OCT-18 6GNT 1 JRNL REVDAT 1 26-SEP-18 6GNT 0 JRNL AUTH J.R.HARRISON,S.BRAND,V.SMITH,D.A.ROBINSON,S.THOMPSON, JRNL AUTH 2 A.SMITH,K.DAVIES,N.MOK,L.S.TORRIE,I.COLLIE,I.HALLYBURTON, JRNL AUTH 3 S.NORVAL,F.R.C.SIMEONS,L.STOJANOVSKI,J.A.FREARSON,R.BRENK, JRNL AUTH 4 P.G.WYATT,I.H.GILBERT,K.D.READ JRNL TITL A MOLECULAR HYBRIDIZATION APPROACH FOR THE DESIGN OF POTENT, JRNL TITL 2 HIGHLY SELECTIVE, AND BRAIN-PENETRANT N-MYRISTOYLTRANSFERASE JRNL TITL 3 INHIBITORS. JRNL REF J. MED. CHEM. V. 61 8374 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 30207721 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00884 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 51956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2781 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.782 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3554 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3313 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4848 ; 2.351 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7626 ; 2.298 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 6.800 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;35.772 ;23.706 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 551 ;16.193 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.570 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.265 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3971 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 848 ; 0.022 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6GNT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54836 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2WSA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26%PEG1500,0.2M NACL, 0.1M REMARK 280 NACACODYLATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.42150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 233 OG REMARK 470 ILE A 235 CG1 CG2 CD1 REMARK 470 GLN A 240 CG CD OE1 NE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 268 NZ REMARK 470 LYS A 317 CD CE NZ REMARK 470 SER A 336 OG REMARK 470 LYS A 412 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER A 221 O HOH A 1114 1.60 REMARK 500 CG MET A 141 O HOH A 1329 1.63 REMARK 500 N GLY A 334 O HOH A 1101 1.71 REMARK 500 OE1 GLU A 48 O HOH A 1102 1.85 REMARK 500 SD MET A 63 O HOH A 1146 1.93 REMARK 500 N GLY A 263 O HOH A 1103 1.98 REMARK 500 O ASN A 335 O HOH A 1104 2.01 REMARK 500 NE2 GLN A 146 O HOH A 1105 2.02 REMARK 500 OE1 GLU A 47 O HOH A 1106 2.04 REMARK 500 ND2 ASN A 335 O HOH A 1107 2.06 REMARK 500 OE1 GLU A 74 O HOH A 1108 2.10 REMARK 500 OE1 GLU A 64 O HOH A 1109 2.11 REMARK 500 O HOH A 1126 O HOH A 1210 2.13 REMARK 500 CG LEU A 175 O HOH A 1359 2.14 REMARK 500 CB ASP A 25 O HOH A 1322 2.15 REMARK 500 O VAL A 143 O HOH A 1110 2.17 REMARK 500 O HOH A 1243 O HOH A 1354 2.17 REMARK 500 CB CYS A 102 O HOH A 1358 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 67 CB ASP A 67 CG 0.183 REMARK 500 ASP A 67 CG ASP A 67 OD1 0.147 REMARK 500 GLU A 159 CB GLU A 159 CG 0.118 REMARK 500 GLU A 229 CG GLU A 229 CD 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 63 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 ASP A 67 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG A 115 CB - CG - CD ANGL. DEV. = -19.8 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 THR A 195 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 THR A 195 OG1 - CB - CG2 ANGL. DEV. = 14.8 DEGREES REMARK 500 ASP A 294 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 304 CG - CD - NE ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG A 304 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU A 340 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG A 384 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 384 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 102 52.96 -118.19 REMARK 500 MET A 135 31.10 -153.90 REMARK 500 ARG A 231 55.27 121.52 REMARK 500 SER A 233 145.00 59.91 REMARK 500 ILE A 235 120.10 87.43 REMARK 500 PRO A 236 147.96 -39.35 REMARK 500 LYS A 241 -2.82 -57.01 REMARK 500 GLN A 243 -71.04 -78.67 REMARK 500 VAL A 307 -63.52 -121.72 REMARK 500 ASN A 335 123.80 -26.62 REMARK 500 HIS A 347 -137.90 -109.34 REMARK 500 GLU A 379 47.74 -75.97 REMARK 500 LEU A 381 -138.26 51.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 231 PHE A 232 -40.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F5Q A 1003 DBREF 6GNT A 11 421 UNP Q4Q5S8 Q4Q5S8_LEIMA 11 421 SEQRES 1 A 411 ALA HIS ALA PHE TRP SER THR GLN PRO VAL PRO GLN THR SEQRES 2 A 411 GLU ASP GLU THR GLU LYS ILE VAL PHE ALA GLY PRO MET SEQRES 3 A 411 ASP GLU PRO LYS THR VAL ALA ASP ILE PRO GLU GLU PRO SEQRES 4 A 411 TYR PRO ILE ALA SER THR PHE GLU TRP TRP THR PRO ASN SEQRES 5 A 411 MET GLU ALA ALA ASP ASP ILE HIS ALA ILE TYR GLU LEU SEQRES 6 A 411 LEU ARG ASP ASN TYR VAL GLU ASP ASP ASP SER MET PHE SEQRES 7 A 411 ARG PHE ASN TYR SER GLU GLU PHE LEU GLN TRP ALA LEU SEQRES 8 A 411 CYS PRO PRO ASN TYR ILE PRO ASP TRP HIS VAL ALA VAL SEQRES 9 A 411 ARG ARG LYS ALA ASP LYS LYS LEU LEU ALA PHE ILE ALA SEQRES 10 A 411 GLY VAL PRO VAL THR LEU ARG MET GLY THR PRO LYS TYR SEQRES 11 A 411 MET LYS VAL LYS ALA GLN GLU LYS GLY GLU GLY GLU GLU SEQRES 12 A 411 ALA ALA LYS TYR ASP GLU PRO ARG HIS ILE CYS GLU ILE SEQRES 13 A 411 ASN PHE LEU CYS VAL HIS LYS GLN LEU ARG GLU LYS ARG SEQRES 14 A 411 LEU ALA PRO ILE LEU ILE LYS GLU ALA THR ARG ARG VAL SEQRES 15 A 411 ASN ARG THR ASN VAL TRP GLN ALA VAL TYR THR ALA GLY SEQRES 16 A 411 VAL LEU LEU PRO THR PRO TYR ALA SER GLY GLN TYR PHE SEQRES 17 A 411 HIS ARG SER LEU ASN PRO GLU LYS LEU VAL GLU ILE ARG SEQRES 18 A 411 PHE SER GLY ILE PRO ALA GLN TYR GLN LYS PHE GLN ASN SEQRES 19 A 411 PRO MET ALA MET LEU LYS ARG ASN TYR GLN LEU PRO SER SEQRES 20 A 411 ALA PRO LYS ASN SER GLY LEU ARG GLU MET LYS PRO SER SEQRES 21 A 411 ASP VAL PRO GLN VAL ARG ARG ILE LEU MET ASN TYR LEU SEQRES 22 A 411 ASP SER PHE ASP VAL GLY PRO VAL PHE SER ASP ALA GLU SEQRES 23 A 411 ILE SER HIS TYR LEU LEU PRO ARG ASP GLY VAL VAL PHE SEQRES 24 A 411 THR TYR VAL VAL GLU ASN ASP LYS LYS VAL THR ASP PHE SEQRES 25 A 411 PHE SER PHE TYR ARG ILE PRO SER THR VAL ILE GLY ASN SEQRES 26 A 411 SER ASN TYR ASN LEU LEU ASN ALA ALA TYR VAL HIS TYR SEQRES 27 A 411 TYR ALA ALA THR SER ILE PRO LEU HIS GLN LEU ILE LEU SEQRES 28 A 411 ASP LEU LEU ILE VAL ALA HIS SER ARG GLY PHE ASP VAL SEQRES 29 A 411 CYS ASN MET VAL GLU ILE LEU ASP ASN ARG SER PHE VAL SEQRES 30 A 411 GLU GLN LEU LYS PHE GLY ALA GLY ASP GLY HIS LEU ARG SEQRES 31 A 411 TYR TYR PHE TYR ASN TRP ALA TYR PRO LYS ILE LYS PRO SEQRES 32 A 411 SER GLN VAL ALA LEU VAL MET LEU HET MYA A1001 63 HET GOL A1002 6 HET F5Q A1003 36 HETNAM MYA TETRADECANOYL-COA HETNAM GOL GLYCEROL HETNAM F5Q 4-[4-(1-METHYLPIPERIDIN-4-YL)BUTYL]-~{N}-(6-PYRROLIDIN- HETNAM 2 F5Q 1-YLQUINOLIN-5-YL)BENZENESULFONAMIDE HETSYN MYA MYRISTOYL-COA HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MYA C35 H62 N7 O17 P3 S FORMUL 3 GOL C3 H8 O3 FORMUL 4 F5Q C29 H38 N4 O2 S FORMUL 5 HOH *289(H2 O) HELIX 1 AA1 PHE A 14 GLN A 18 5 5 HELIX 2 AA2 THR A 23 ILE A 30 1 8 HELIX 3 AA3 THR A 41 ILE A 45 5 5 HELIX 4 AA4 ALA A 65 TYR A 80 1 16 HELIX 5 AA5 SER A 93 CYS A 102 1 10 HELIX 6 AA6 ILE A 107 ASP A 109 5 3 HELIX 7 AA7 PRO A 138 LYS A 148 1 11 HELIX 8 AA8 GLU A 150 LYS A 156 1 7 HELIX 9 AA9 LYS A 173 ARG A 176 5 4 HELIX 10 AB1 ARG A 179 ARG A 194 1 16 HELIX 11 AB2 ASN A 223 ILE A 230 1 8 HELIX 12 AB3 PRO A 236 LYS A 241 1 6 HELIX 13 AB4 ASN A 244 GLN A 254 1 11 HELIX 14 AB5 LYS A 268 SER A 270 5 3 HELIX 15 AB6 ASP A 271 ASP A 284 1 14 HELIX 16 AB7 SER A 293 LEU A 302 1 10 HELIX 17 AB8 PRO A 355 ARG A 370 1 16 HELIX 18 AB9 ASP A 382 VAL A 387 5 6 HELIX 19 AC1 LYS A 412 VAL A 416 5 5 SHEET 1 AA112 PHE A 56 TRP A 59 0 SHEET 2 AA112 HIS A 111 ARG A 116 -1 O ARG A 115 N GLU A 57 SHEET 3 AA112 LEU A 122 ARG A 134 -1 O LEU A 123 N VAL A 114 SHEET 4 AA112 ARG A 161 VAL A 171 -1 O GLU A 165 N VAL A 129 SHEET 5 AA112 ALA A 200 ALA A 204 1 O VAL A 201 N CYS A 164 SHEET 6 AA112 GLY A 393 TYR A 404 -1 O ARG A 400 N ALA A 204 SHEET 7 AA112 ALA A 213 SER A 221 -1 N ALA A 213 O TYR A 401 SHEET 8 AA112 VAL A 374 VAL A 378 -1 O MET A 377 N PHE A 218 SHEET 9 AA112 LEU A 340 ALA A 351 1 N ALA A 344 O VAL A 374 SHEET 10 AA112 LYS A 318 VAL A 332 -1 N TYR A 326 O TYR A 345 SHEET 11 AA112 VAL A 308 ASN A 315 -1 N PHE A 309 O PHE A 325 SHEET 12 AA112 LEU A 264 GLU A 266 -1 N ARG A 265 O VAL A 312 SHEET 1 AA210 PHE A 88 PHE A 90 0 SHEET 2 AA210 LYS A 318 VAL A 332 -1 O THR A 331 N ARG A 89 SHEET 3 AA210 LEU A 340 ALA A 351 -1 O TYR A 345 N TYR A 326 SHEET 4 AA210 VAL A 374 VAL A 378 1 O VAL A 374 N ALA A 344 SHEET 5 AA210 ALA A 213 SER A 221 -1 N PHE A 218 O MET A 377 SHEET 6 AA210 GLY A 393 TYR A 404 -1 O TYR A 401 N ALA A 213 SHEET 7 AA210 ALA A 200 ALA A 204 -1 N ALA A 204 O ARG A 400 SHEET 8 AA210 ARG A 161 VAL A 171 1 N CYS A 164 O VAL A 201 SHEET 9 AA210 LEU A 122 ARG A 134 -1 N VAL A 129 O GLU A 165 SHEET 10 AA210 GLY A 289 PRO A 290 -1 O GLY A 289 N ARG A 134 CISPEP 1 PRO A 209 THR A 210 0 -16.08 CISPEP 2 GLY A 234 ILE A 235 0 -1.32 CISPEP 3 ILE A 235 PRO A 236 0 -16.39 SITE 1 AC1 36 HIS A 12 ALA A 13 PHE A 14 TRP A 15 SITE 2 AC1 36 ASN A 79 TYR A 80 VAL A 81 PHE A 168 SITE 3 AC1 36 LEU A 169 CYS A 170 VAL A 171 ARG A 176 SITE 4 AC1 36 GLU A 177 LYS A 178 ARG A 179 LEU A 180 SITE 5 AC1 36 ALA A 181 PRO A 182 THR A 189 VAL A 192 SITE 6 AC1 36 TRP A 198 ALA A 200 TYR A 202 THR A 203 SITE 7 AC1 36 LEU A 208 TYR A 404 HOH A1124 HOH A1134 SITE 8 AC1 36 HOH A1159 HOH A1164 HOH A1194 HOH A1207 SITE 9 AC1 36 HOH A1245 HOH A1259 HOH A1302 HOH A1326 SITE 1 AC2 7 VAL A 131 GLU A 165 TYR A 348 LEU A 418 SITE 2 AC2 7 VAL A 419 HOH A1161 HOH A1212 SITE 1 AC3 16 PHE A 88 PHE A 90 ASN A 167 THR A 203 SITE 2 AC3 16 TYR A 217 SER A 330 ASN A 376 GLY A 395 SITE 3 AC3 16 ASP A 396 GLY A 397 LEU A 399 MET A 420 SITE 4 AC3 16 LEU A 421 HOH A1135 HOH A1160 HOH A1184 CRYST1 48.757 90.843 53.677 90.00 114.85 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020510 0.000000 0.009496 0.00000 SCALE2 0.000000 0.011008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020530 0.00000