HEADER ONCOPROTEIN 01-JUN-18 6GOE TITLE KRAS FULL LENGTH G12V GPPNHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KRAS FULL LENGHT, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CRUZ-MIGONI,C.E.QUEVEDO,S.B.CARR,M.T.EHEBAUER,S.V.E.PHILLIPS, AUTHOR 2 T.H.RABBITTS REVDAT 3 17-JAN-24 6GOE 1 LINK REVDAT 2 20-FEB-19 6GOE 1 JRNL REVDAT 1 06-FEB-19 6GOE 0 JRNL AUTH A.CRUZ-MIGONI,P.CANNING,C.E.QUEVEDO,C.J.R.BATAILLE,N.BERY, JRNL AUTH 2 A.MILLER,A.J.RUSSELL,S.E.V.PHILLIPS,S.B.CARR,T.H.RABBITTS JRNL TITL STRUCTURE-BASED DEVELOPMENT OF NEW RAS-EFFECTOR INHIBITORS JRNL TITL 2 FROM A COMBINATION OF ACTIVE AND INACTIVE RAS-BINDING JRNL TITL 3 COMPOUNDS. JRNL REF PROC. NATL. ACAD. SCI. V. 116 2545 2019 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30683716 JRNL DOI 10.1073/PNAS.1811360116 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1188 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1328 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.308 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1385 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1275 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1875 ; 2.071 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2961 ; 1.116 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 167 ; 5.789 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;41.787 ;24.394 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;15.960 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.318 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 211 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1511 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 275 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 668 ; 3.041 ; 2.782 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 667 ; 3.042 ; 2.776 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 832 ; 4.221 ; 4.152 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 833 ; 4.219 ; 4.158 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 717 ; 4.092 ; 3.263 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 714 ; 4.099 ; 3.267 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1040 ; 6.070 ; 4.699 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1453 ; 7.473 ;33.037 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1438 ; 7.436 ;32.803 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GOE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200009180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.928 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24651 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 1.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DST REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISCL, 0.2 M NAOAC AND 30-35 % REMARK 280 PEG 4000, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.94000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.05937 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.26333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 39.94000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 23.05937 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.26333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 39.94000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 23.05937 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.26333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.11874 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.52667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.11874 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.52667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.11874 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.52667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -65.97 -99.18 REMARK 500 GLU A 37 118.14 -168.11 REMARK 500 LYS A 117 36.16 74.19 REMARK 500 ARG A 149 -0.54 79.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.0 REMARK 620 3 GNP A 201 O3G 170.4 89.1 REMARK 620 4 GNP A 201 O1B 92.7 170.7 96.6 REMARK 620 5 HOH A 321 O 84.0 92.2 92.8 94.9 REMARK 620 6 HOH A 324 O 89.7 84.9 93.1 87.4 173.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GOD RELATED DB: PDB DBREF 6GOE A 2 171 UNP P01116 RASK_HUMAN 2 171 SEQADV 6GOE GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 6GOE SER A 1 UNP P01116 EXPRESSION TAG SEQADV 6GOE VAL A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQRES 1 A 172 GLY SER THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL SEQRES 2 A 172 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 172 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 172 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 172 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 172 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 172 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 172 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 172 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 172 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 172 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 172 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 172 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 172 LYS MET SER HET MG A 200 1 HET GNP A 201 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 2 MG MG 2+ FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 HOH *106(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 ARG A 68 GLY A 75 1 8 HELIX 3 AA3 ASN A 86 ASP A 105 1 20 HELIX 4 AA4 ASP A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 SER A 171 1 21 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O GLU A 49 N ILE A 46 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 200 1555 1555 2.19 LINK OG1 THR A 35 MG MG A 200 1555 1555 2.19 LINK MG MG A 200 O3G GNP A 201 1555 1555 2.05 LINK MG MG A 200 O1B GNP A 201 1555 1555 2.04 LINK MG MG A 200 O HOH A 321 1555 1555 1.96 LINK MG MG A 200 O HOH A 324 1555 1555 2.26 SITE 1 AC1 5 SER A 17 THR A 35 GNP A 201 HOH A 321 SITE 2 AC1 5 HOH A 324 SITE 1 AC2 31 VAL A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC2 31 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC2 31 VAL A 29 ASP A 30 TYR A 32 PRO A 34 SITE 4 AC2 31 THR A 35 GLY A 60 ASN A 116 LYS A 117 SITE 5 AC2 31 ASP A 119 LEU A 120 SER A 145 ALA A 146 SITE 6 AC2 31 LYS A 147 MG A 200 HOH A 302 HOH A 311 SITE 7 AC2 31 HOH A 321 HOH A 324 HOH A 348 HOH A 359 SITE 8 AC2 31 HOH A 375 HOH A 379 HOH A 381 CRYST1 79.880 79.880 78.790 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012519 0.007228 0.000000 0.00000 SCALE2 0.000000 0.014455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012692 0.00000 TER 1332 SER A 171 HETATM 1333 MG MG A 200 -10.003 -15.098 17.208 1.00 22.59 MG HETATM 1334 PG GNP A 201 -8.058 -12.553 17.119 1.00 25.38 P HETATM 1335 O1G GNP A 201 -6.848 -12.309 16.063 1.00 24.23 O HETATM 1336 O2G GNP A 201 -8.699 -11.221 17.589 1.00 23.62 O HETATM 1337 O3G GNP A 201 -9.102 -13.406 16.489 1.00 23.55 O HETATM 1338 N3B GNP A 201 -7.244 -13.352 18.403 1.00 22.84 N HETATM 1339 PB GNP A 201 -8.214 -13.976 19.702 1.00 20.65 P HETATM 1340 O1B GNP A 201 -9.284 -14.956 19.115 1.00 17.51 O HETATM 1341 O2B GNP A 201 -8.756 -12.988 20.712 1.00 19.28 O HETATM 1342 O3A GNP A 201 -7.110 -14.899 20.433 1.00 18.90 O HETATM 1343 PA GNP A 201 -6.812 -16.511 20.317 1.00 21.34 P HETATM 1344 O1A GNP A 201 -6.359 -16.734 18.835 1.00 25.48 O HETATM 1345 O2A GNP A 201 -7.958 -17.315 20.763 1.00 20.83 O HETATM 1346 O5' GNP A 201 -5.539 -16.692 21.190 1.00 19.29 O HETATM 1347 C5' GNP A 201 -4.300 -15.952 21.003 1.00 22.84 C HETATM 1348 C4' GNP A 201 -3.057 -16.594 21.566 1.00 24.99 C HETATM 1349 O4' GNP A 201 -3.208 -16.541 23.023 1.00 22.50 O HETATM 1350 C3' GNP A 201 -2.849 -18.057 21.209 1.00 22.81 C HETATM 1351 O3' GNP A 201 -1.440 -18.336 21.220 1.00 25.02 O HETATM 1352 C2' GNP A 201 -3.560 -18.772 22.371 1.00 21.08 C HETATM 1353 O2' GNP A 201 -3.115 -20.052 22.599 1.00 26.06 O HETATM 1354 C1' GNP A 201 -3.241 -17.891 23.559 1.00 22.86 C HETATM 1355 N9 GNP A 201 -4.247 -17.952 24.666 1.00 19.47 N HETATM 1356 C8 GNP A 201 -5.591 -17.737 24.504 1.00 20.25 C HETATM 1357 N7 GNP A 201 -6.232 -17.841 25.692 1.00 19.49 N HETATM 1358 C5 GNP A 201 -5.250 -18.090 26.615 1.00 17.08 C HETATM 1359 C6 GNP A 201 -5.185 -18.377 28.043 1.00 19.12 C HETATM 1360 O6 GNP A 201 -6.217 -18.321 28.838 1.00 18.53 O HETATM 1361 N1 GNP A 201 -3.970 -18.557 28.629 1.00 18.79 N HETATM 1362 C2 GNP A 201 -2.817 -18.663 27.921 1.00 20.50 C HETATM 1363 N2 GNP A 201 -1.659 -18.906 28.594 1.00 23.19 N HETATM 1364 N3 GNP A 201 -2.797 -18.413 26.591 1.00 19.34 N HETATM 1365 C4 GNP A 201 -3.959 -18.210 25.902 1.00 18.05 C HETATM 1366 O HOH A 301 -27.702 5.928 18.409 1.00 49.71 O HETATM 1367 O HOH A 302 -0.648 -20.736 23.963 1.00 34.37 O HETATM 1368 O HOH A 303 -30.107 -26.584 34.594 1.00 48.49 O HETATM 1369 O HOH A 304 -13.179 -19.336 15.902 1.00 28.50 O HETATM 1370 O HOH A 305 -7.899 1.744 24.059 1.00 32.15 O HETATM 1371 O HOH A 306 -31.718 -17.585 34.535 1.00 40.15 O HETATM 1372 O HOH A 307 -7.061 -1.123 15.720 1.00 53.54 O HETATM 1373 O HOH A 308 -32.383 -14.488 19.663 1.00 35.51 O HETATM 1374 O HOH A 309 -23.697 -27.622 31.954 1.00 45.42 O HETATM 1375 O HOH A 310 0.417 -20.884 31.762 1.00 32.92 O HETATM 1376 O HOH A 311 -5.927 -18.931 17.438 1.00 30.87 O HETATM 1377 O HOH A 312 -2.028 1.931 26.509 1.00 18.84 O HETATM 1378 O HOH A 313 -33.414 -10.418 24.623 1.00 55.52 O HETATM 1379 O HOH A 314 -9.517 -23.280 23.108 1.00 23.85 O HETATM 1380 O HOH A 315 -20.319 -5.670 39.195 1.00 26.67 O HETATM 1381 O HOH A 316 -15.729 -11.074 40.064 1.00 36.90 O HETATM 1382 O HOH A 317 -13.064 -4.450 43.986 1.00 47.88 O HETATM 1383 O HOH A 318 -19.012 4.768 17.059 1.00 53.27 O HETATM 1384 O HOH A 319 -4.421 -26.805 27.973 1.00 34.69 O HETATM 1385 O HOH A 320 -30.795 -5.554 20.444 1.00 45.26 O HETATM 1386 O HOH A 321 -11.680 -14.159 17.591 1.00 22.82 O HETATM 1387 O HOH A 322 -6.659 -21.847 35.708 1.00 26.38 O HETATM 1388 O HOH A 323 -10.140 -6.154 24.864 1.00 19.73 O HETATM 1389 O HOH A 324 -8.213 -16.397 16.740 1.00 21.40 O HETATM 1390 O HOH A 325 -17.327 -26.527 15.683 1.00 40.46 O HETATM 1391 O HOH A 326 -20.518 3.013 29.886 1.00 43.60 O HETATM 1392 O HOH A 327 -1.620 -11.774 26.169 1.00 29.15 O HETATM 1393 O HOH A 328 -11.771 0.286 29.816 1.00 30.38 O HETATM 1394 O HOH A 329 -15.708 3.785 30.759 1.00 37.62 O HETATM 1395 O HOH A 330 -22.086 5.923 23.271 1.00 37.16 O HETATM 1396 O HOH A 331 -24.332 -9.403 12.761 1.00 46.62 O HETATM 1397 O HOH A 332 -25.211 -6.985 32.073 1.00 23.22 O HETATM 1398 O HOH A 333 -2.132 -2.556 37.469 1.00 38.23 O HETATM 1399 O HOH A 334 -5.719 2.759 25.306 1.00 25.38 O HETATM 1400 O HOH A 335 -11.085 -28.941 27.866 1.00 44.65 O HETATM 1401 O HOH A 336 -9.625 -17.830 13.791 1.00 34.06 O HETATM 1402 O HOH A 337 -31.068 -9.584 16.855 1.00 35.81 O HETATM 1403 O HOH A 338 -24.971 -2.764 30.729 1.00 39.91 O HETATM 1404 O HOH A 339 -22.589 -20.259 35.954 1.00 38.99 O HETATM 1405 O HOH A 340 -17.640 -5.633 40.328 1.00 25.55 O HETATM 1406 O HOH A 341 1.090 -19.262 16.474 1.00 49.34 O HETATM 1407 O HOH A 342 -13.911 -7.667 18.667 1.00 20.57 O HETATM 1408 O HOH A 343 -3.831 -14.148 37.895 1.00 45.28 O HETATM 1409 O HOH A 344 -4.078 -6.548 21.677 1.00 32.27 O HETATM 1410 O HOH A 345 -29.291 -7.538 32.720 1.00 36.68 O HETATM 1411 O HOH A 346 -11.682 -5.949 10.730 1.00 53.78 O HETATM 1412 O HOH A 347 -18.885 -28.289 31.544 1.00 46.05 O HETATM 1413 O HOH A 348 -8.404 -10.920 14.130 1.00 33.21 O HETATM 1414 O HOH A 349 -2.393 -17.729 38.352 1.00 45.94 O HETATM 1415 O HOH A 350 -35.396 -15.621 28.064 1.00 54.47 O HETATM 1416 O HOH A 351 -24.223 -16.187 37.027 1.00 34.86 O HETATM 1417 O HOH A 352 -14.100 -17.140 37.771 1.00 35.81 O HETATM 1418 O HOH A 353 -15.489 -24.001 33.088 1.00 31.20 O HETATM 1419 O HOH A 354 -6.340 -6.141 42.723 1.00 37.14 O HETATM 1420 O HOH A 355 -1.068 -4.283 24.142 1.00 24.40 O HETATM 1421 O HOH A 356 -34.995 -8.127 35.895 1.00 40.35 O HETATM 1422 O HOH A 357 -12.646 -16.241 10.502 1.00 38.14 O HETATM 1423 O HOH A 358 -25.722 -12.854 36.417 1.00 49.40 O HETATM 1424 O HOH A 359 0.349 -17.281 23.209 1.00 35.89 O HETATM 1425 O HOH A 360 -23.834 -1.667 9.437 1.00 49.18 O HETATM 1426 O HOH A 361 -21.503 -24.873 15.709 1.00 39.57 O HETATM 1427 O HOH A 362 -14.163 -23.148 36.567 1.00 33.50 O HETATM 1428 O HOH A 363 -3.219 -10.104 24.197 1.00 41.33 O HETATM 1429 O HOH A 364 -15.752 -9.934 12.850 1.00 33.64 O HETATM 1430 O HOH A 365 -18.248 2.900 28.343 1.00 35.71 O HETATM 1431 O HOH A 366 -31.556 -14.455 35.064 1.00 41.07 O HETATM 1432 O HOH A 367 -19.064 -9.642 39.348 1.00 27.71 O HETATM 1433 O HOH A 368 -33.371 1.795 23.687 1.00 49.27 O HETATM 1434 O HOH A 369 -13.006 -21.424 39.504 1.00 46.50 O HETATM 1435 O HOH A 370 -25.229 -28.568 20.592 1.00 43.69 O HETATM 1436 O HOH A 371 -0.087 -9.150 25.997 1.00 25.40 O HETATM 1437 O HOH A 372 -1.726 -13.257 22.270 1.00 32.53 O HETATM 1438 O HOH A 373 -16.871 -22.161 34.704 1.00 24.32 O HETATM 1439 O HOH A 374 -6.738 -29.250 24.877 1.00 41.36 O HETATM 1440 O HOH A 375 0.652 -19.025 26.754 1.00 32.89 O HETATM 1441 O HOH A 376 -36.084 -17.959 20.769 1.00 41.95 O HETATM 1442 O HOH A 377 -38.915 -8.565 26.987 1.00 49.17 O HETATM 1443 O HOH A 378 -14.173 -14.821 38.700 1.00 29.14 O HETATM 1444 O HOH A 379 -7.882 -20.173 19.870 1.00 35.88 O HETATM 1445 O HOH A 380 -29.820 -3.072 17.881 1.00 39.67 O HETATM 1446 O HOH A 381 -0.825 -16.359 25.451 1.00 23.25 O HETATM 1447 O HOH A 382 -6.770 -4.840 18.737 1.00 37.42 O HETATM 1448 O HOH A 383 -21.373 -3.008 10.010 1.00 38.33 O HETATM 1449 O HOH A 384 -19.907 -16.736 10.447 1.00 35.80 O HETATM 1450 O HOH A 385 -15.888 4.014 20.542 1.00 39.66 O HETATM 1451 O HOH A 386 -24.959 -13.932 17.950 1.00 34.40 O HETATM 1452 O HOH A 387 -5.276 -4.020 43.556 1.00 48.97 O HETATM 1453 O HOH A 388 -26.598 1.169 13.688 1.00 40.15 O HETATM 1454 O HOH A 389 -24.758 -7.205 37.223 1.00 45.22 O HETATM 1455 O HOH A 390 3.230 -10.774 30.453 1.00 34.26 O HETATM 1456 O HOH A 391 -22.385 -3.627 39.558 1.00 36.70 O HETATM 1457 O HOH A 392 -28.926 -17.488 38.911 1.00 58.27 O HETATM 1458 O HOH A 393 -28.685 -5.472 30.982 1.00 43.91 O HETATM 1459 O HOH A 394 -26.491 -4.673 32.227 1.00 35.22 O HETATM 1460 O HOH A 395 -31.324 -6.206 34.215 1.00 52.40 O HETATM 1461 O HOH A 396 -24.458 6.611 23.542 1.00 52.25 O HETATM 1462 O HOH A 397 -34.258 -13.694 35.116 1.00 44.19 O HETATM 1463 O HOH A 398 -28.072 -13.925 37.907 1.00 52.47 O HETATM 1464 O HOH A 399 -16.427 -8.229 40.983 1.00 39.97 O HETATM 1465 O HOH A 400 -16.638 -21.544 37.316 1.00 45.06 O HETATM 1466 O HOH A 401 0.000 0.000 26.913 0.33 21.40 O HETATM 1467 O HOH A 402 -26.619 -10.208 5.414 1.00 40.49 O HETATM 1468 O HOH A 403 -8.083 -20.543 17.048 1.00 35.59 O HETATM 1469 O HOH A 404 -10.332 -23.516 10.288 1.00 45.05 O HETATM 1470 O HOH A 405 -30.529 -14.561 37.581 1.00 44.52 O HETATM 1471 O HOH A 406 -1.790 -26.499 27.199 1.00 43.59 O CONECT 122 1333 CONECT 270 1333 CONECT 1333 122 270 1337 1340 CONECT 1333 1386 1389 CONECT 1334 1335 1336 1337 1338 CONECT 1335 1334 CONECT 1336 1334 CONECT 1337 1333 1334 CONECT 1338 1334 1339 CONECT 1339 1338 1340 1341 1342 CONECT 1340 1333 1339 CONECT 1341 1339 CONECT 1342 1339 1343 CONECT 1343 1342 1344 1345 1346 CONECT 1344 1343 CONECT 1345 1343 CONECT 1346 1343 1347 CONECT 1347 1346 1348 CONECT 1348 1347 1349 1350 CONECT 1349 1348 1354 CONECT 1350 1348 1351 1352 CONECT 1351 1350 CONECT 1352 1350 1353 1354 CONECT 1353 1352 CONECT 1354 1349 1352 1355 CONECT 1355 1354 1356 1365 CONECT 1356 1355 1357 CONECT 1357 1356 1358 CONECT 1358 1357 1359 1365 CONECT 1359 1358 1360 1361 CONECT 1360 1359 CONECT 1361 1359 1362 CONECT 1362 1361 1363 1364 CONECT 1363 1362 CONECT 1364 1362 1365 CONECT 1365 1355 1358 1364 CONECT 1386 1333 CONECT 1389 1333 MASTER 346 0 2 5 6 0 10 6 1467 1 38 14 END