HEADER CARBOHYDRATE 05-JUN-18 6GPA TITLE BETA-1,4-GALACTANASE FROM BACTEROIDES THETAIOTAOMICRON WITH GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARABINOGALACTAN ENDO-BETA-1,4-GALACTANASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.89; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SAMPLE SEQUENCE STARTS AT -1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 SOURCE 3 / DSM 2079 / NCTC 10582 / E50 / VPI-5482); SOURCE 4 ORGANISM_TAXID: 226186; SOURCE 5 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 6 ATCC: 29148; SOURCE 7 GENE: BT_4668; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLYCOSYL HYDROLASE, GALACTOSIDASE, ENDO-GALACTANASE, GALACTOSE, KEYWDS 2 CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR J.HEKELAAR,M.BOGER,S.S.LEEUWEN VAN,A.LAMMERTS VAN BUEREN,L.DIJKHUIZEN REVDAT 4 17-JAN-24 6GPA 1 HETSYN REVDAT 3 29-JUL-20 6GPA 1 COMPND REMARK HETNAM SITE REVDAT 2 06-FEB-19 6GPA 1 JRNL REVDAT 1 26-DEC-18 6GPA 0 JRNL AUTH M.BOGER,J.HEKELAAR,S.S.VAN LEEUWEN,L.DIJKHUIZEN, JRNL AUTH 2 A.LAMMERTS VAN BUEREN JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A FAMILY GH53 JRNL TITL 2 BETA-1,4-GALACTANASE FROM BACTEROIDES THETAIOTAOMICRON THAT JRNL TITL 3 FACILITATES DEGRADATION OF PREBIOTIC JRNL TITL 4 GALACTOOLIGOSACCHARIDES. JRNL REF J. STRUCT. BIOL. V. 205 1 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 30553858 JRNL DOI 10.1016/J.JSB.2018.12.002 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 50408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2600 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3189 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 722 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.649 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5074 ; 0.011 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 4477 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6885 ; 1.457 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10500 ; 0.987 ; 1.648 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 622 ; 6.373 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 265 ;34.514 ;24.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 852 ;12.767 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.175 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5708 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 936 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6GPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KB-MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 46.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 6GP5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-23% PEG6000, 200 MM NH4CL, MES PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.81600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 38 REMARK 465 VAL B 39 REMARK 465 LYS B 40 REMARK 465 GLU B 41 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 725 O HOH B 750 1.84 REMARK 500 O HOH A 633 O HOH A 752 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 728 O HOH B 511 1455 2.00 REMARK 500 O HOH A 734 O HOH B 737 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 233 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 181 41.44 -87.87 REMARK 500 ASN A 194 63.80 -117.21 REMARK 500 ASN A 330 -119.78 60.69 REMARK 500 PRO B 66 48.94 -85.94 REMARK 500 THR B 181 41.08 -82.48 REMARK 500 ASN B 194 68.40 -114.96 REMARK 500 GLN B 299 51.53 -116.89 REMARK 500 ASN B 330 -121.50 60.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 70 0.10 SIDE CHAIN REMARK 500 ARG A 89 0.10 SIDE CHAIN REMARK 500 ARG B 115 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 6GPA A 38 351 UNP Q89YR3 Q89YR3_BACTN 38 351 DBREF 6GPA B 38 351 UNP Q89YR3 Q89YR3_BACTN 38 351 SEQRES 1 A 314 VAL VAL LYS GLU GLU GLY PHE ALA ARG GLY ALA ASP VAL SEQRES 2 A 314 SER TRP LEU THR GLN MET GLU ALA GLU GLY LEU LYS PHE SEQRES 3 A 314 TYR THR PRO ASP GLU ASN ARG GLN GLU MET GLU CYS MET SEQRES 4 A 314 ASP LEU LEU ARG ASP TYR CYS GLY VAL ASN SER ILE ARG SEQRES 5 A 314 LEU ARG VAL TRP VAL ASN PRO LYS ASP GLY TRP ASN ASN SEQRES 6 A 314 MET ASN ASP VAL ILE VAL LYS ALA LYS ARG ALA GLU ARG SEQRES 7 A 314 LEU GLY LEU ARG THR MET ILE ASP PHE HIS PHE SER ASP SEQRES 8 A 314 THR TRP ALA ASP PRO GLY HIS GLN GLU MET PRO GLU ALA SEQRES 9 A 314 TRP LYS GLU LEU SER PHE ASP ASP LEU LYS ILE ALA LEU SEQRES 10 A 314 SER GLU HIS VAL LYS SER VAL LEU THR ALA LEU LYS ALA SEQRES 11 A 314 VAL GLY VAL THR PRO GLU TRP VAL GLN VAL GLY ASN GLU SEQRES 12 A 314 THR THR PRO GLY MET MET LEU PRO VAL GLY SER VAL ASP SEQRES 13 A 314 ASN PRO GLU GLN LEU THR ALA LEU ASN ASN ALA GLY TYR SEQRES 14 A 314 ASP ALA VAL LYS ALA ILE CYS PRO ASP ALA LYS VAL ILE SEQRES 15 A 314 VAL HIS LEU ASP ALA GLY ASN ASP GLN TRP VAL TYR ASN SEQRES 16 A 314 ARG MET PHE ASP ILE LEU GLN ALA ASN GLY GLY LYS TYR SEQRES 17 A 314 ASP MET ILE GLY MET SER LEU TYR PRO TYR TRP ALA GLU SEQRES 18 A 314 GLN GLU GLY LYS THR GLY GLY TRP LEU LYS VAL ALA ASP SEQRES 19 A 314 ASP CYS ILE ALA ASN ILE LYS HIS VAL LYS GLN LYS TYR SEQRES 20 A 314 ASN LYS PRO VAL MET ILE CYS GLU ILE GLY MET PRO TYR SEQRES 21 A 314 ASP GLN ALA GLU ALA CYS LYS GLN LEU ILE THR LYS MET SEQRES 22 A 314 MET GLN ALA ASP VAL GLU GLY ILE PHE TYR TRP GLU PRO SEQRES 23 A 314 GLN ALA PRO ASN GLY TYR ASN ASP GLY TYR ASN LEU GLY SEQRES 24 A 314 CYS PHE ASP ASN ASN ALA PRO THR ILE ALA LEU ASP ALA SEQRES 25 A 314 PHE LYS SEQRES 1 B 314 VAL VAL LYS GLU GLU GLY PHE ALA ARG GLY ALA ASP VAL SEQRES 2 B 314 SER TRP LEU THR GLN MET GLU ALA GLU GLY LEU LYS PHE SEQRES 3 B 314 TYR THR PRO ASP GLU ASN ARG GLN GLU MET GLU CYS MET SEQRES 4 B 314 ASP LEU LEU ARG ASP TYR CYS GLY VAL ASN SER ILE ARG SEQRES 5 B 314 LEU ARG VAL TRP VAL ASN PRO LYS ASP GLY TRP ASN ASN SEQRES 6 B 314 MET ASN ASP VAL ILE VAL LYS ALA LYS ARG ALA GLU ARG SEQRES 7 B 314 LEU GLY LEU ARG THR MET ILE ASP PHE HIS PHE SER ASP SEQRES 8 B 314 THR TRP ALA ASP PRO GLY HIS GLN GLU MET PRO GLU ALA SEQRES 9 B 314 TRP LYS GLU LEU SER PHE ASP ASP LEU LYS ILE ALA LEU SEQRES 10 B 314 SER GLU HIS VAL LYS SER VAL LEU THR ALA LEU LYS ALA SEQRES 11 B 314 VAL GLY VAL THR PRO GLU TRP VAL GLN VAL GLY ASN GLU SEQRES 12 B 314 THR THR PRO GLY MET MET LEU PRO VAL GLY SER VAL ASP SEQRES 13 B 314 ASN PRO GLU GLN LEU THR ALA LEU ASN ASN ALA GLY TYR SEQRES 14 B 314 ASP ALA VAL LYS ALA ILE CYS PRO ASP ALA LYS VAL ILE SEQRES 15 B 314 VAL HIS LEU ASP ALA GLY ASN ASP GLN TRP VAL TYR ASN SEQRES 16 B 314 ARG MET PHE ASP ILE LEU GLN ALA ASN GLY GLY LYS TYR SEQRES 17 B 314 ASP MET ILE GLY MET SER LEU TYR PRO TYR TRP ALA GLU SEQRES 18 B 314 GLN GLU GLY LYS THR GLY GLY TRP LEU LYS VAL ALA ASP SEQRES 19 B 314 ASP CYS ILE ALA ASN ILE LYS HIS VAL LYS GLN LYS TYR SEQRES 20 B 314 ASN LYS PRO VAL MET ILE CYS GLU ILE GLY MET PRO TYR SEQRES 21 B 314 ASP GLN ALA GLU ALA CYS LYS GLN LEU ILE THR LYS MET SEQRES 22 B 314 MET GLN ALA ASP VAL GLU GLY ILE PHE TYR TRP GLU PRO SEQRES 23 B 314 GLN ALA PRO ASN GLY TYR ASN ASP GLY TYR ASN LEU GLY SEQRES 24 B 314 CYS PHE ASP ASN ASN ALA PRO THR ILE ALA LEU ASP ALA SEQRES 25 B 314 PHE LYS HET GAL A 401 12 HET GAL B 401 12 HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 HOH *722(H2 O) HELIX 1 AA1 TRP A 52 GLY A 60 1 9 HELIX 2 AA2 GLU A 74 GLY A 84 1 11 HELIX 3 AA3 ASN A 102 LEU A 116 1 15 HELIX 4 AA4 PRO A 139 LYS A 143 5 5 HELIX 5 AA5 SER A 146 VAL A 168 1 23 HELIX 6 AA6 ASN A 194 CYS A 213 1 20 HELIX 7 AA7 ASP A 227 ASN A 241 1 15 HELIX 8 AA8 TYR A 255 GLU A 260 1 6 HELIX 9 AA9 GLY A 264 ASN A 285 1 22 HELIX 10 AB1 GLN A 299 MET A 311 1 13 HELIX 11 AB2 GLY A 328 TYR A 333 1 6 HELIX 12 AB3 ILE A 345 LYS A 351 5 7 HELIX 13 AB4 TRP B 52 GLY B 60 1 9 HELIX 14 AB5 GLU B 74 CYS B 83 1 10 HELIX 15 AB6 ASN B 102 LEU B 116 1 15 HELIX 16 AB7 PRO B 139 LYS B 143 5 5 HELIX 17 AB8 SER B 146 VAL B 168 1 23 HELIX 18 AB9 ASN B 194 CYS B 213 1 20 HELIX 19 AC1 ASP B 227 ASN B 241 1 15 HELIX 20 AC2 TYR B 255 GLU B 260 1 6 HELIX 21 AC3 GLY B 264 ASN B 285 1 22 HELIX 22 AC4 GLN B 299 MET B 311 1 13 HELIX 23 AC5 ILE B 345 PHE B 350 5 6 SHEET 1 AA1 9 ALA A 45 ASP A 49 0 SHEET 2 AA1 9 SER A 87 VAL A 92 1 O ARG A 89 N ALA A 48 SHEET 3 AA1 9 ARG A 119 PHE A 124 1 O ASP A 123 N LEU A 90 SHEET 4 AA1 9 TRP A 174 VAL A 177 1 O GLN A 176 N ILE A 122 SHEET 5 AA1 9 LYS A 217 LEU A 222 1 O ILE A 219 N VAL A 175 SHEET 6 AA1 9 MET A 247 LEU A 252 1 O GLY A 249 N VAL A 220 SHEET 7 AA1 9 VAL A 288 ILE A 293 1 O GLU A 292 N LEU A 252 SHEET 8 AA1 9 GLY A 317 TRP A 321 1 O TRP A 321 N ILE A 293 SHEET 9 AA1 9 ALA A 45 ASP A 49 1 N GLY A 47 O ILE A 318 SHEET 1 AA2 2 PHE A 63 TYR A 64 0 SHEET 2 AA2 2 GLU A 72 MET A 73 -1 O MET A 73 N PHE A 63 SHEET 1 AA3 2 GLY A 184 MET A 185 0 SHEET 2 AA3 2 GLY A 190 SER A 191 -1 O GLY A 190 N MET A 185 SHEET 1 AA4 2 PHE A 338 ASP A 339 0 SHEET 2 AA4 2 ALA A 342 PRO A 343 -1 O ALA A 342 N ASP A 339 SHEET 1 AA5 9 ALA B 45 ASP B 49 0 SHEET 2 AA5 9 SER B 87 VAL B 92 1 O ARG B 89 N ALA B 48 SHEET 3 AA5 9 ARG B 119 PHE B 124 1 O ASP B 123 N LEU B 90 SHEET 4 AA5 9 TRP B 174 VAL B 177 1 O GLN B 176 N ILE B 122 SHEET 5 AA5 9 LYS B 217 LEU B 222 1 O ILE B 219 N VAL B 175 SHEET 6 AA5 9 MET B 247 LEU B 252 1 O GLY B 249 N VAL B 220 SHEET 7 AA5 9 VAL B 288 ILE B 293 1 O MET B 289 N ILE B 248 SHEET 8 AA5 9 GLY B 317 TRP B 321 1 O GLY B 317 N ILE B 290 SHEET 9 AA5 9 ALA B 45 ASP B 49 1 N GLY B 47 O ILE B 318 SHEET 1 AA6 2 GLY B 184 MET B 185 0 SHEET 2 AA6 2 GLY B 190 SER B 191 -1 O GLY B 190 N MET B 185 SHEET 1 AA7 2 PHE B 338 ASP B 339 0 SHEET 2 AA7 2 ALA B 342 PRO B 343 -1 O ALA B 342 N ASP B 339 CISPEP 1 LEU A 187 PRO A 188 0 9.21 CISPEP 2 LEU B 187 PRO B 188 0 -0.74 CRYST1 47.544 45.632 138.760 90.00 99.80 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021033 0.000000 0.003632 0.00000 SCALE2 0.000000 0.021914 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007313 0.00000