HEADER FLAVOPROTEIN 07-JUN-18 6GPU TITLE CRYSTAL STRUCTURE OF MINISOG AT 1.17A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOTROPIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEFECTIVE IN CHLOROPLAST AVOIDANCE PROTEIN 1,NON-PHOTOTROPIC COMPND 5 HYPOCOTYL 1-LIKE PROTEIN 1,NPH1-LIKE PROTEIN 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: EFIPNPLLG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PHOT2, CAV1, KIN7, NPL1, AT5G58140, K21L19.6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SINGLET OXYGEN GENERATOR, FLUORESCENT PROTEIN, FMN, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.LAFAYE,L.SIGNOR,S.AUMONIER,X.SHU,G.GOTTHARD,A.ROYANT REVDAT 4 17-JAN-24 6GPU 1 LINK REVDAT 3 08-MAY-19 6GPU 1 LINK REVDAT 2 06-MAR-19 6GPU 1 JRNL REVDAT 1 27-FEB-19 6GPU 0 JRNL AUTH J.TORRA,C.LAFAYE,L.SIGNOR,S.AUMONIER,C.FLORS,X.SHU,S.NONELL, JRNL AUTH 2 G.GOTTHARD,A.ROYANT JRNL TITL TAILING MINISOG: STRUCTURAL BASES OF THE COMPLEX JRNL TITL 2 PHOTOPHYSICS OF A FLAVIN-BINDING SINGLET OXYGEN JRNL TITL 3 PHOTOSENSITIZING PROTEIN. JRNL REF SCI REP V. 9 2428 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 30787421 JRNL DOI 10.1038/S41598-019-38955-3 REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0218 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1850 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2601 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.289 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1141 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1099 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1575 ; 1.700 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2581 ; 0.834 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 153 ; 6.195 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;33.962 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 223 ;13.176 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.150 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 170 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1269 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 232 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 504 ; 1.450 ; 1.264 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 502 ; 1.411 ; 1.254 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 637 ; 1.880 ; 1.903 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 638 ; 1.882 ; 1.910 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 637 ; 1.887 ; 1.485 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 637 ; 1.890 ; 1.485 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 917 ; 2.340 ; 2.133 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1427 ; 3.792 ;15.905 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1428 ; 3.791 ;15.908 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2240 ; 1.797 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 95 ;23.700 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2257 ; 8.426 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37913 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EEP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.0, 20 MM MGCL2, REMARK 280 28% PEG 4000, 0 OR 15 MM COCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.14500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 20.01000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 20.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.71750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 20.01000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 20.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.57250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 20.01000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 20.01000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 100.71750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 20.01000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 20.01000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.57250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.14500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 33 CD OE1 OE2 REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 105 O HOH A 1101 1.65 REMARK 500 O HOH A 1140 O HOH A 1145 1.73 REMARK 500 NE2 GLN A 87 O HOH A 1102 1.84 REMARK 500 OE1 GLU A 47 O HOH A 1103 2.03 REMARK 500 O HOH A 1102 O HOH A 1177 2.09 REMARK 500 O HOH A 1101 O HOH A 1193 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1191 O HOH A 1191 7555 1.28 REMARK 500 OE1 GLU A 47 O HOH A 1154 5444 1.94 REMARK 500 OE2 GLU A 47 O HOH A 1154 5444 2.01 REMARK 500 O HOH A 1102 O HOH A 1235 5554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1004 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 N REMARK 620 2 MET A 1 O 78.1 REMARK 620 3 GLU A 95 OE2 116.7 48.3 REMARK 620 4 TRS A1005 O1 101.7 90.8 56.6 REMARK 620 5 TRS A1005 N 175.4 97.3 59.2 78.0 REMARK 620 6 HOH A1215 O 91.0 168.6 137.8 88.3 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1114 O REMARK 620 2 HOH A1116 O 92.5 REMARK 620 3 HOH A1150 O 88.2 87.7 REMARK 620 4 HOH A1220 O 173.0 92.6 87.3 REMARK 620 5 HOH A1238 O 94.2 87.8 175.0 90.8 REMARK 620 6 HOH A1241 O 85.2 175.4 88.3 89.3 96.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 1005 DBREF 6GPU A 2 106 UNP P93025 PHOT2_ARATH 388 492 SEQADV 6GPU MET A 1 UNP P93025 INITIATING METHIONINE SEQADV 6GPU SER A 4 UNP P93025 ASN 390 CONFLICT SEQADV 6GPU THR A 8 UNP P93025 SER 394 CONFLICT SEQADV 6GPU GLY A 23 UNP P93025 SER 409 CONFLICT SEQADV 6GPU GLY A 40 UNP P93025 CYS 426 CONFLICT SEQADV 6GPU LEU A 84 UNP P93025 PHE 470 CONFLICT SEQADV 6GPU GLU A 107 UNP P93025 EXPRESSION TAG SEQADV 6GPU PHE A 108 UNP P93025 EXPRESSION TAG SEQADV 6GPU ILE A 109 UNP P93025 EXPRESSION TAG SEQADV 6GPU PRO A 110 UNP P93025 EXPRESSION TAG SEQADV 6GPU ASN A 111 UNP P93025 EXPRESSION TAG SEQADV 6GPU PRO A 112 UNP P93025 EXPRESSION TAG SEQADV 6GPU LEU A 113 UNP P93025 EXPRESSION TAG SEQADV 6GPU LEU A 114 UNP P93025 EXPRESSION TAG SEQADV 6GPU GLY A 115 UNP P93025 EXPRESSION TAG SEQRES 1 A 115 MET GLU LYS SER PHE VAL ILE THR ASP PRO ARG LEU PRO SEQRES 2 A 115 ASP ASN PRO ILE ILE PHE ALA SER ASP GLY PHE LEU GLU SEQRES 3 A 115 LEU THR GLU TYR SER ARG GLU GLU ILE LEU GLY ARG ASN SEQRES 4 A 115 GLY ARG PHE LEU GLN GLY PRO GLU THR ASP GLN ALA THR SEQRES 5 A 115 VAL GLN LYS ILE ARG ASP ALA ILE ARG ASP GLN ARG GLU SEQRES 6 A 115 ILE THR VAL GLN LEU ILE ASN TYR THR LYS SER GLY LYS SEQRES 7 A 115 LYS PHE TRP ASN LEU LEU HIS LEU GLN PRO MET ARG ASP SEQRES 8 A 115 GLN LYS GLY GLU LEU GLN TYR PHE ILE GLY VAL GLN LEU SEQRES 9 A 115 ASP GLY GLU PHE ILE PRO ASN PRO LEU LEU GLY HET FMN A1001 31 HET CL A1002 1 HET MG A1003 1 HET CO A1004 1 HET TRS A1005 8 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM CO COBALT (II) ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN TRS TRIS BUFFER FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 CL CL 1- FORMUL 4 MG MG 2+ FORMUL 5 CO CO 2+ FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 7 HOH *151(H2 O) HELIX 1 AA1 SER A 21 GLU A 29 1 9 HELIX 2 AA2 SER A 31 ILE A 35 5 5 HELIX 3 AA3 ASN A 39 GLN A 44 5 6 HELIX 4 AA4 ASP A 49 GLN A 63 1 15 HELIX 5 AA5 PRO A 110 GLY A 115 1 6 SHEET 1 AA1 5 ILE A 17 ALA A 20 0 SHEET 2 AA1 5 SER A 4 THR A 8 -1 N ILE A 7 O ILE A 18 SHEET 3 AA1 5 LEU A 96 ASP A 105 -1 O GLY A 101 N VAL A 6 SHEET 4 AA1 5 LYS A 79 ARG A 90 -1 N MET A 89 O GLN A 97 SHEET 5 AA1 5 ILE A 66 TYR A 73 -1 N ILE A 66 O LEU A 86 LINK N MET A 1 CO CO A1004 1555 1555 2.17 LINK O MET A 1 CO CO A1004 1555 1555 2.04 LINK OE2 GLU A 95 CO CO A1004 1555 4555 2.05 LINK MG MG A1003 O HOH A1114 1555 1555 1.95 LINK MG MG A1003 O HOH A1116 1555 1555 2.14 LINK MG MG A1003 O HOH A1150 1555 1555 2.11 LINK MG MG A1003 O HOH A1220 1555 1555 2.00 LINK MG MG A1003 O HOH A1238 1555 1555 2.04 LINK MG MG A1003 O HOH A1241 1555 1555 2.05 LINK CO CO A1004 O1 TRS A1005 1555 1555 2.12 LINK CO CO A1004 N TRS A1005 1555 1555 2.17 LINK CO CO A1004 O HOH A1215 1555 5544 2.10 SITE 1 AC1 29 VAL A 6 THR A 8 ASN A 15 ASN A 39 SITE 2 AC1 29 GLY A 40 ARG A 41 LEU A 43 GLN A 44 SITE 3 AC1 29 VAL A 53 ILE A 56 ARG A 57 ILE A 60 SITE 4 AC1 29 LEU A 70 ASN A 72 ASN A 82 LEU A 84 SITE 5 AC1 29 LEU A 86 PHE A 99 ILE A 100 GLY A 101 SITE 6 AC1 29 GLN A 103 CL A1002 HOH A1116 HOH A1127 SITE 7 AC1 29 HOH A1135 HOH A1150 HOH A1157 HOH A1170 SITE 8 AC1 29 HOH A1185 SITE 1 AC2 6 ASN A 15 ASN A 39 ILE A 60 FMN A1001 SITE 2 AC2 6 HOH A1152 HOH A1185 SITE 1 AC3 6 HOH A1114 HOH A1116 HOH A1150 HOH A1220 SITE 2 AC3 6 HOH A1238 HOH A1241 SITE 1 AC4 4 MET A 1 GLU A 95 TRS A1005 HOH A1215 SITE 1 AC5 15 MET A 1 LYS A 3 ASP A 9 ILE A 18 SITE 2 AC5 15 GLU A 95 TYR A 98 LEU A 104 CO A1004 SITE 3 AC5 15 HOH A1111 HOH A1129 HOH A1140 HOH A1145 SITE 4 AC5 15 HOH A1158 HOH A1174 HOH A1215 CRYST1 40.020 40.020 134.290 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007447 0.00000