HEADER FLAVOPROTEIN 07-JUN-18 6GPV TITLE CRYSTAL STRUCTURE OF BLUE-LIGHT IRRADIATED MINISOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOTROPIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEFECTIVE IN CHLOROPLAST AVOIDANCE PROTEIN 1,NON-PHOTOTROPIC COMPND 5 HYPOCOTYL 1-LIKE PROTEIN 1,NPH1-LIKE PROTEIN 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: EFIPNPLLG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PHOT2, CAV1, KIN7, NPL1, AT5G58140, K21L19.6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SINGLET OXYGEN, FLUORESCENT PROTEIN, FMN, PROTEIN OXIDATION, GAMMA- KEYWDS 2 PEROXOTYROSINE, OXIDIZED HISTIDINE, N-FORMYLKYNURENIN, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.LAFAYE,L.SIGNOR,S.AUMONIER,X.SHU,G.GOTTHARD,A.ROYANT REVDAT 3 17-JAN-24 6GPV 1 LINK REVDAT 2 06-MAR-19 6GPV 1 JRNL REVDAT 1 27-FEB-19 6GPV 0 JRNL AUTH J.TORRA,C.LAFAYE,L.SIGNOR,S.AUMONIER,C.FLORS,X.SHU,S.NONELL, JRNL AUTH 2 G.GOTTHARD,A.ROYANT JRNL TITL TAILING MINISOG: STRUCTURAL BASES OF THE COMPLEX JRNL TITL 2 PHOTOPHYSICS OF A FLAVIN-BINDING SINGLET OXYGEN JRNL TITL 3 PHOTOSENSITIZING PROTEIN. JRNL REF SCI REP V. 9 2428 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 30787421 JRNL DOI 10.1038/S41598-019-38955-3 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0218 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 7734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 384 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 551 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 913 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.227 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.396 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1083 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1011 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1477 ; 1.554 ; 2.085 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2355 ; 0.898 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 137 ;23.658 ; 5.474 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;29.269 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 191 ;15.467 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;19.938 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 159 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1245 ; 0.006 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): 224 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 472 ; 2.298 ; 3.279 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 472 ; 2.298 ; 3.279 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 578 ; 3.588 ; 4.907 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 579 ; 3.585 ; 4.906 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 611 ; 2.418 ; 3.562 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 612 ; 2.416 ; 3.561 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 882 ; 4.005 ; 5.195 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1466 ; 7.621 ;37.940 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1450 ; 7.562 ;37.615 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EEP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.0, 20 MM MGCL2, REMARK 280 28% PEG 4000, 0 OR 15 MM COCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.88000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 20.25000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 20.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.32000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 20.25000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 20.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.44000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 20.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 20.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 100.32000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 20.25000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 20.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.44000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.88000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 110 REMARK 465 ASN A 111 REMARK 465 PRO A 112 REMARK 465 LEU A 113 REMARK 465 LEU A 114 REMARK 465 GLY A 115 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CD CE NZ REMARK 470 GLU A 33 CD OE1 OE2 REMARK 470 GLU A 65 CD OE1 OE2 REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1171 O HOH A 1220 2.18 REMARK 500 OE1 GLN A 54 NH1 ARG A 57 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 F7Q A 73 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 F7Q A 73 -12.85 REMARK 500 PHE A 80 12.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1225 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A1226 DISTANCE = 7.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1104 O REMARK 620 2 HOH A1114 O 87.8 REMARK 620 3 HOH A1116 O 90.4 85.0 REMARK 620 4 HOH A1212 O 165.6 85.1 101.4 REMARK 620 5 HOH A1216 O 106.8 162.8 85.9 82.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LUM A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues F7Q A 73 REMARK 800 through THR A 74 bound to ASN A 72 DBREF 6GPV A 1 106 UNP P93025 PHOT2_ARATH 387 492 SEQADV 6GPV MET A 1 UNP P93025 ILE 387 CONFLICT SEQADV 6GPV SER A 4 UNP P93025 ASN 390 CONFLICT SEQADV 6GPV THR A 8 UNP P93025 SER 394 CONFLICT SEQADV 6GPV GLY A 23 UNP P93025 SER 409 CONFLICT SEQADV 6GPV GLY A 40 UNP P93025 CYS 426 CONFLICT SEQADV 6GPV LEU A 84 UNP P93025 PHE 470 CONFLICT SEQADV 6GPV HOO A 85 UNP P93025 HIS 471 MICROHETEROGENEITY SEQADV 6GPV GLU A 107 UNP P93025 EXPRESSION TAG SEQADV 6GPV PHE A 108 UNP P93025 EXPRESSION TAG SEQADV 6GPV ILE A 109 UNP P93025 EXPRESSION TAG SEQADV 6GPV PRO A 110 UNP P93025 EXPRESSION TAG SEQADV 6GPV ASN A 111 UNP P93025 EXPRESSION TAG SEQADV 6GPV PRO A 112 UNP P93025 EXPRESSION TAG SEQADV 6GPV LEU A 113 UNP P93025 EXPRESSION TAG SEQADV 6GPV LEU A 114 UNP P93025 EXPRESSION TAG SEQADV 6GPV GLY A 115 UNP P93025 EXPRESSION TAG SEQRES 1 A 115 MET GLU LYS SER PHE VAL ILE THR ASP PRO ARG LEU PRO SEQRES 2 A 115 ASP ASN PRO ILE ILE PHE ALA SER ASP GLY PHE LEU GLU SEQRES 3 A 115 LEU THR GLU TYR SER ARG GLU GLU ILE LEU GLY ARG ASN SEQRES 4 A 115 GLY ARG PHE LEU GLN GLY PRO GLU THR ASP GLN ALA THR SEQRES 5 A 115 VAL GLN LYS ILE ARG ASP ALA ILE ARG ASP GLN ARG GLU SEQRES 6 A 115 ILE THR VAL GLN LEU ILE ASN TYR THR LYS SER GLY LYS SEQRES 7 A 115 LYS PHE NFK ASN LEU LEU HOO LEU GLN PRO MET ARG ASP SEQRES 8 A 115 GLN LYS GLY GLU LEU GLN TYR PHE ILE GLY VAL GLN LEU SEQRES 9 A 115 ASP GLY GLU PHE ILE PRO ASN PRO LEU LEU GLY MODRES 6GPV NFK A 81 TRP MODIFIED RESIDUE MODRES 6GPV HOO A 85 HIS MODIFIED RESIDUE HET F7Q A 73 14 HET NFK A 81 16 HET HOO A 85 12 HET OHI A 85 11 HET FMN A1001 31 HET MG A1002 1 HET CL A1003 1 HET LUM A1004 18 HETNAM F7Q (2~{S})-2-AZANYL-3-[1-(DIOXIDANYL)-4-OXIDANYLIDENE- HETNAM 2 F7Q CYCLOHEXA-2,5-DIEN-1-YL]PROPANOIC ACID HETNAM NFK N'-FORMYLKYNURENINE HETNAM HOO (2~{S})-2-AZANYL-3-[2,5-BIS(OXIDANYLIDENE)IMIDAZOL-4- HETNAM 2 HOO YL]PROPANOIC ACID HETNAM OHI 3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM LUM LUMICHROME HETSYN NFK (2S)-2-AMINO-4-[2-(FORMYLAMINO)PHENYL]-4-OXOBUTANOIC HETSYN 2 NFK ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN LUM 7,8-DIMETHYLALLOXAZINE; 6,7-DIMETHYLALLOXAZINE FORMUL 1 F7Q C9 H11 N O5 FORMUL 1 NFK C11 H12 N2 O4 FORMUL 1 HOO C6 H7 N3 O4 FORMUL 1 OHI C6 H7 N3 O3 FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 MG MG 2+ FORMUL 4 CL CL 1- FORMUL 5 LUM C12 H10 N4 O2 FORMUL 6 HOH *126(H2 O) HELIX 1 AA1 SER A 21 GLU A 29 1 9 HELIX 2 AA2 SER A 31 ILE A 35 5 5 HELIX 3 AA3 ASN A 39 GLN A 44 5 6 HELIX 4 AA4 ASP A 49 ASP A 62 1 14 SHEET 1 AA1 5 ILE A 17 ALA A 20 0 SHEET 2 AA1 5 SER A 4 THR A 8 -1 N ILE A 7 O ILE A 18 SHEET 3 AA1 5 LEU A 96 ASP A 105 -1 O GLY A 101 N VAL A 6 SHEET 4 AA1 5 LYS A 79 ARG A 90 -1 N LEU A 83 O LEU A 104 SHEET 5 AA1 5 ILE A 66 TYR A 73 -1 N ILE A 66 O LEU A 86 LINK C ASN A 72 N BF7Q A 73 1555 1555 1.33 LINK C BF7Q A 73 N THR A 74 1555 1555 1.32 LINK C PHE A 80 N NFK A 81 1555 1555 1.32 LINK C NFK A 81 N ASN A 82 1555 1555 1.33 LINK C LEU A 84 N AHOO A 85 1555 1555 1.34 LINK C LEU A 84 N BOHI A 85 1555 1555 1.34 LINK C AHOO A 85 N LEU A 86 1555 1555 1.35 LINK C BOHI A 85 N LEU A 86 1555 1555 1.35 LINK MG A MG A1002 O AHOH A1104 1555 1555 2.07 LINK MG A MG A1002 O AHOH A1114 1555 1555 2.37 LINK MG A MG A1002 O AHOH A1116 1555 1555 2.07 LINK MG A MG A1002 O AHOH A1212 1555 1555 2.01 LINK MG A MG A1002 O AHOH A1216 1555 1555 2.05 SITE 1 AC1 28 VAL A 6 THR A 8 ASN A 39 GLY A 40 SITE 2 AC1 28 ARG A 41 LEU A 43 GLN A 44 VAL A 53 SITE 3 AC1 28 ILE A 56 ARG A 57 ILE A 60 LEU A 70 SITE 4 AC1 28 ASN A 72 ASN A 82 LEU A 84 LEU A 86 SITE 5 AC1 28 PHE A 99 ILE A 100 GLY A 101 GLN A 103 SITE 6 AC1 28 CL A1003 LUM A1004 HOH A1110 HOH A1114 SITE 7 AC1 28 HOH A1116 HOH A1157 HOH A1167 HOH A1193 SITE 1 AC2 5 HOH A1104 HOH A1114 HOH A1116 HOH A1212 SITE 2 AC2 5 HOH A1216 SITE 1 AC3 4 ASN A 15 ASN A 39 ILE A 60 FMN A1001 SITE 1 AC4 15 VAL A 6 THR A 8 ASN A 15 GLY A 40 SITE 2 AC4 15 LEU A 43 GLN A 44 ASN A 72 ASN A 82 SITE 3 AC4 15 LEU A 84 LEU A 86 PHE A 99 ILE A 100 SITE 4 AC4 15 GLY A 101 GLN A 103 FMN A1001 SITE 1 AC5 17 LEU A 27 THR A 28 GLU A 29 LEU A 43 SITE 2 AC5 17 GLY A 45 PRO A 46 GLU A 47 ILE A 71 SITE 3 AC5 17 ASN A 72 LYS A 75 SER A 76 GLY A 77 SITE 4 AC5 17 LYS A 78 LYS A 79 PHE A 80 HOH A1126 SITE 5 AC5 17 HOH A1133 CRYST1 40.500 40.500 133.760 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024691 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007476 0.00000