HEADER TRANSFERASE 07-JUN-18 6GQD TITLE STRUCTURE OF HUMAN GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (GALT), TITLE 2 WITH CRYSTALLIZATION EPITOPE MUTATIONS A21Y:A22T:T23P:R25L COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAL-1-P URIDYLYLTRANSFERASE,UDP-GLUCOSE--HEXOSE-1-PHOSPHATE COMPND 5 URIDYLYLTRANSFERASE; COMPND 6 EC: 2.7.7.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GALT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRYSTAL EPITOPE, TRANSFERASE, GLUCOSE-1-PHOSPHATE, URIDINE KEYWDS 2 MONOPHOSPHATE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 SGC EXPDTA X-RAY DIFFRACTION AUTHOR M.FAIRHEAD,C.STRAIN-DAMERELL,J.KOPEC,G.A.BEZERRA,M.ZHANG,N.BURGESS- AUTHOR 2 BROWN,F.VON DELFT,C.ARROWSMITH,A.EDWARDS,C.BOUNTRA,W.W.YUE, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 1 18-JUL-18 6GQD 0 JRNL AUTH M.FAIRHEAD,C.STRAIN-DAMERELL,J.KOPEC,G.A.BEZERRA,M.ZHANG, JRNL AUTH 2 N.BURGESS-BROWN,F.VON DELFT,C.ARROWSMITH,A.EDWARDS, JRNL AUTH 3 C.BOUNTRA,W.W.YUE JRNL TITL STRUCTURE OF HUMAN GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE JRNL TITL 2 (GALT), WITH CRYSTALLIZATION EPITOPE MUTATIONS JRNL TITL 3 A21Y:A22T:T23P:R25L JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 60315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.1351 - 4.2019 0.99 2933 149 0.1526 0.1488 REMARK 3 2 4.2019 - 3.3353 1.00 2811 148 0.1365 0.1733 REMARK 3 3 3.3353 - 2.9137 0.99 2734 141 0.1467 0.1733 REMARK 3 4 2.9137 - 2.6473 1.00 2775 128 0.1472 0.1717 REMARK 3 5 2.6473 - 2.4575 1.00 2756 147 0.1432 0.1677 REMARK 3 6 2.4575 - 2.3126 1.00 2726 159 0.1468 0.1679 REMARK 3 7 2.3126 - 2.1968 0.99 2710 140 0.1719 0.2040 REMARK 3 8 2.1968 - 2.1012 1.00 2709 157 0.1451 0.1918 REMARK 3 9 2.1012 - 2.0203 1.00 2705 151 0.1425 0.1890 REMARK 3 10 2.0203 - 1.9506 1.00 2740 132 0.1622 0.1771 REMARK 3 11 1.9506 - 1.8896 1.00 2712 143 0.1971 0.2436 REMARK 3 12 1.8896 - 1.8356 1.00 2722 130 0.1612 0.1640 REMARK 3 13 1.8356 - 1.7872 1.00 2714 131 0.1667 0.2098 REMARK 3 14 1.7872 - 1.7436 1.00 2725 130 0.1793 0.2071 REMARK 3 15 1.7436 - 1.7040 1.00 2729 127 0.1949 0.2639 REMARK 3 16 1.7040 - 1.6677 1.00 2687 139 0.2005 0.2336 REMARK 3 17 1.6677 - 1.6344 1.00 2690 145 0.2135 0.2312 REMARK 3 18 1.6344 - 1.6035 1.00 2706 133 0.2392 0.2500 REMARK 3 19 1.6035 - 1.5749 1.00 2670 157 0.2587 0.2678 REMARK 3 20 1.5749 - 1.5482 1.00 2683 142 0.2803 0.2850 REMARK 3 21 1.5482 - 1.5232 1.00 2715 134 0.3070 0.3632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.7672 85.4651 18.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.1758 REMARK 3 T33: 0.1997 T12: 0.0075 REMARK 3 T13: -0.0267 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.1233 L22: 5.0312 REMARK 3 L33: 2.2226 L12: -0.9189 REMARK 3 L13: -0.9612 L23: 1.5146 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: -0.0559 S13: -0.0950 REMARK 3 S21: 0.1707 S22: -0.0491 S23: -0.2702 REMARK 3 S31: 0.0923 S32: 0.1730 S33: 0.0564 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.7962 92.2969 -6.6794 REMARK 3 T TENSOR REMARK 3 T11: 0.3113 T22: 0.2730 REMARK 3 T33: 0.3416 T12: -0.0181 REMARK 3 T13: -0.0273 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.0618 L22: 0.3264 REMARK 3 L33: 0.0119 L12: 0.1331 REMARK 3 L13: 0.0005 L23: 0.0458 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: 0.0823 S13: -0.0968 REMARK 3 S21: -0.5471 S22: 0.0731 S23: 0.1349 REMARK 3 S31: 0.2678 S32: 0.0448 S33: -0.0177 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.4726 123.4288 1.4103 REMARK 3 T TENSOR REMARK 3 T11: 0.1481 T22: 0.1202 REMARK 3 T33: 0.2413 T12: 0.0128 REMARK 3 T13: -0.0071 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 2.1716 L22: 2.1733 REMARK 3 L33: 2.0579 L12: 0.3334 REMARK 3 L13: -0.0840 L23: -0.1423 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0871 S13: 0.2188 REMARK 3 S21: 0.0859 S22: 0.0845 S23: 0.1606 REMARK 3 S31: -0.1441 S32: -0.1102 S33: -0.1292 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.3879 114.7003 7.7887 REMARK 3 T TENSOR REMARK 3 T11: 0.1339 T22: 0.1262 REMARK 3 T33: 0.1758 T12: 0.0008 REMARK 3 T13: -0.0169 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.0209 L22: 1.0238 REMARK 3 L33: 0.3700 L12: 0.4055 REMARK 3 L13: -0.1903 L23: -0.1349 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -0.0250 S13: 0.1429 REMARK 3 S21: 0.0711 S22: 0.0044 S23: 0.0101 REMARK 3 S31: -0.0247 S32: 0.0207 S33: -0.0212 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.7799 106.4997 22.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.1693 T22: 0.1322 REMARK 3 T33: 0.1316 T12: -0.0088 REMARK 3 T13: 0.0005 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.3957 L22: 1.2488 REMARK 3 L33: 1.2869 L12: -0.1433 REMARK 3 L13: 0.2887 L23: -0.5091 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: -0.2546 S13: -0.0559 REMARK 3 S21: 0.2475 S22: 0.0054 S23: 0.0365 REMARK 3 S31: 0.0013 S32: -0.0631 S33: -0.0396 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.4476 101.2445 12.5589 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.1467 REMARK 3 T33: 0.1753 T12: 0.0010 REMARK 3 T13: -0.0145 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.8942 L22: 0.9748 REMARK 3 L33: 0.3579 L12: 0.2055 REMARK 3 L13: -0.0944 L23: -0.0461 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: -0.0720 S13: -0.0389 REMARK 3 S21: 0.0916 S22: -0.0113 S23: -0.1258 REMARK 3 S31: -0.0200 S32: 0.0361 S33: 0.0230 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 351 THROUGH 368 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.5127 94.7806 -0.3659 REMARK 3 T TENSOR REMARK 3 T11: 0.1750 T22: 0.1963 REMARK 3 T33: 0.2141 T12: -0.0083 REMARK 3 T13: 0.0183 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.4212 L22: 4.4724 REMARK 3 L33: 3.1360 L12: 0.4024 REMARK 3 L13: -0.0517 L23: -2.9824 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: 0.3170 S13: -0.1064 REMARK 3 S21: -0.3183 S22: 0.0307 S23: -0.1670 REMARK 3 S31: 0.1639 S32: 0.1376 S33: 0.0167 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92818 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60414 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 72.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.83600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULPHATE, 30% PEG4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.32350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.37400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.32350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.37400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 145.29400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 193.49600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 ASP A 7 REMARK 465 PRO A 8 REMARK 465 GLN A 9 REMARK 465 GLN A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 GLN A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 GLU A 16 REMARK 465 ALA A 17 REMARK 465 ASP A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 57 REMARK 465 GLU A 58 REMARK 465 PRO A 59 REMARK 465 GLN A 60 REMARK 465 GLY A 369 REMARK 465 GLN A 370 REMARK 465 LYS A 371 REMARK 465 ASP A 372 REMARK 465 ARG A 373 REMARK 465 GLU A 374 REMARK 465 THR A 375 REMARK 465 ALA A 376 REMARK 465 THR A 377 REMARK 465 ILE A 378 REMARK 465 ALA A 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 GLN A 54 CG CD OE1 NE2 REMARK 470 LEU A 61 CG CD1 CD2 REMARK 470 LEU A 62 CG CD1 CD2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ASP A 113 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 228 O HOH A 503 1.25 REMARK 500 H ASP A 113 O HOH A 501 1.30 REMARK 500 HH21 ARG A 123 O HOH A 507 1.54 REMARK 500 OE2 GLU A 220 HH21 ARG A 223 1.58 REMARK 500 N ASP A 113 O HOH A 501 1.88 REMARK 500 O HOH A 753 O HOH A 827 1.89 REMARK 500 C ASP A 113 O HOH A 501 1.98 REMARK 500 O ASP A 113 O HOH A 501 2.01 REMARK 500 NH2 ARG A 357 O HOH A 502 2.02 REMARK 500 O HOH A 844 O HOH A 851 2.03 REMARK 500 O HOH A 926 O HOH A 942 2.03 REMARK 500 NH2 ARG A 228 O HOH A 503 2.05 REMARK 500 O HOH A 511 O HOH A 797 2.11 REMARK 500 CA ASP A 113 O HOH A 501 2.13 REMARK 500 OE1 GLN A 164 O HOH A 504 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 833 O HOH A 833 2775 1.39 REMARK 500 O HOH A 888 O HOH A 935 2775 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 69.12 63.46 REMARK 500 SER A 91 -93.46 -131.85 REMARK 500 PRO A 107 150.45 -49.49 REMARK 500 LYS A 229 -36.59 67.88 REMARK 500 THR A 305 -143.40 -114.42 REMARK 500 SER A 329 -177.89 -171.41 REMARK 500 ALA A 343 -72.65 -143.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 949 DISTANCE = 6.73 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 202 OE1 REMARK 620 2 GLU A 202 OE2 58.4 REMARK 620 3 HIS A 301 ND1 90.6 109.0 REMARK 620 4 HIS A 319 NE2 84.7 119.1 118.6 REMARK 620 5 HIS A 321 NE2 168.2 110.2 96.8 99.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H2U A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IN3 RELATED DB: PDB DBREF 6GQD A 1 379 UNP P07902 GALT_HUMAN 1 379 SEQADV 6GQD SER A 0 UNP P07902 EXPRESSION TAG SEQADV 6GQD TYR A 21 UNP P07902 ALA 21 CONFLICT SEQADV 6GQD THR A 22 UNP P07902 ALA 22 CONFLICT SEQADV 6GQD PRO A 23 UNP P07902 THR 23 CONFLICT SEQADV 6GQD LEU A 25 UNP P07902 ARG 25 CONFLICT SEQADV 6GQD ASP A 314 UNP P07902 ASN 314 CONFLICT SEQRES 1 A 380 SER MET SER ARG SER GLY THR ASP PRO GLN GLN ARG GLN SEQRES 2 A 380 GLN ALA SER GLU ALA ASP ALA ALA TYR THR PRO PHE LEU SEQRES 3 A 380 ALA ASN ASP HIS GLN HIS ILE ARG TYR ASN PRO LEU GLN SEQRES 4 A 380 ASP GLU TRP VAL LEU VAL SER ALA HIS ARG MET LYS ARG SEQRES 5 A 380 PRO TRP GLN GLY GLN VAL GLU PRO GLN LEU LEU LYS THR SEQRES 6 A 380 VAL PRO ARG HIS ASP PRO LEU ASN PRO LEU CYS PRO GLY SEQRES 7 A 380 ALA ILE ARG ALA ASN GLY GLU VAL ASN PRO GLN TYR ASP SEQRES 8 A 380 SER THR PHE LEU PHE ASP ASN ASP PHE PRO ALA LEU GLN SEQRES 9 A 380 PRO ASP ALA PRO SER PRO GLY PRO SER ASP HIS PRO LEU SEQRES 10 A 380 PHE GLN ALA LYS SER ALA ARG GLY VAL CYS LYS VAL MET SEQRES 11 A 380 CYS PHE HIS PRO TRP SER ASP VAL THR LEU PRO LEU MET SEQRES 12 A 380 SER VAL PRO GLU ILE ARG ALA VAL VAL ASP ALA TRP ALA SEQRES 13 A 380 SER VAL THR GLU GLU LEU GLY ALA GLN TYR PRO TRP VAL SEQRES 14 A 380 GLN ILE PHE GLU ASN LYS GLY ALA MET MET GLY CYS SER SEQRES 15 A 380 ASN PRO HIS PRO HIS CYS GLN VAL TRP ALA SER SER PHE SEQRES 16 A 380 LEU PRO ASP ILE ALA GLN ARG GLU GLU ARG SER GLN GLN SEQRES 17 A 380 ALA TYR LYS SER GLN HIS GLY GLU PRO LEU LEU MET GLU SEQRES 18 A 380 TYR SER ARG GLN GLU LEU LEU ARG LYS GLU ARG LEU VAL SEQRES 19 A 380 LEU THR SER GLU HIS TRP LEU VAL LEU VAL PRO PHE TRP SEQRES 20 A 380 ALA THR TRP PRO TYR GLN THR LEU LEU LEU PRO ARG ARG SEQRES 21 A 380 HIS VAL ARG ARG LEU PRO GLU LEU THR PRO ALA GLU ARG SEQRES 22 A 380 ASP ASP LEU ALA SER ILE MET LYS LYS LEU LEU THR LYS SEQRES 23 A 380 TYR ASP ASN LEU PHE GLU THR SER PHE PRO TYR SER MET SEQRES 24 A 380 GLY TRP HIS GLY ALA PRO THR GLY SER GLU ALA GLY ALA SEQRES 25 A 380 ASN TRP ASP HIS TRP GLN LEU HIS ALA HIS TYR TYR PRO SEQRES 26 A 380 PRO LEU LEU ARG SER ALA THR VAL ARG LYS PHE MET VAL SEQRES 27 A 380 GLY TYR GLU MET LEU ALA GLN ALA GLN ARG ASP LEU THR SEQRES 28 A 380 PRO GLU GLN ALA ALA GLU ARG LEU ARG ALA LEU PRO GLU SEQRES 29 A 380 VAL HIS TYR HIS LEU GLY GLN LYS ASP ARG GLU THR ALA SEQRES 30 A 380 THR ILE ALA HET ZN A 401 1 HET EDO A 402 10 HET EDO A 403 10 HET H2U A 404 31 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 H2U C9 H15 N2 O9 P FORMUL 6 HOH *449(H2 O) HELIX 1 AA1 THR A 138 MET A 142 5 5 HELIX 2 AA2 SER A 143 ALA A 163 1 21 HELIX 3 AA3 GLY A 175 GLY A 179 5 5 HELIX 4 AA4 PRO A 196 GLY A 214 1 19 HELIX 5 AA5 PRO A 216 LYS A 229 1 14 HELIX 6 AA6 ARG A 263 LEU A 267 5 5 HELIX 7 AA7 THR A 268 PHE A 290 1 23 HELIX 8 AA8 THR A 305 ALA A 309 5 5 HELIX 9 AA9 GLY A 338 ALA A 343 1 6 HELIX 10 AB1 THR A 350 LEU A 361 1 12 SHEET 1 AA1 3 HIS A 31 ASN A 35 0 SHEET 2 AA1 3 GLU A 40 VAL A 44 -1 O GLU A 40 N ASN A 35 SHEET 3 AA1 3 ALA A 345 ARG A 347 1 O ALA A 345 N LEU A 43 SHEET 1 AA2 9 PHE A 93 ASP A 96 0 SHEET 2 AA2 9 GLY A 124 CYS A 130 -1 O VAL A 128 N PHE A 95 SHEET 3 AA2 9 HIS A 186 SER A 192 -1 O VAL A 189 N LYS A 127 SHEET 4 AA2 9 TRP A 167 LYS A 174 -1 N PHE A 171 O GLN A 188 SHEET 5 AA2 9 TYR A 296 HIS A 301 -1 O TYR A 296 N LYS A 174 SHEET 6 AA2 9 HIS A 319 TYR A 323 -1 O TYR A 323 N SER A 297 SHEET 7 AA2 9 THR A 253 PRO A 257 -1 N LEU A 255 O ALA A 320 SHEET 8 AA2 9 TRP A 239 LEU A 242 -1 N LEU A 242 O LEU A 254 SHEET 9 AA2 9 LEU A 232 THR A 235 -1 N VAL A 233 O VAL A 241 SHEET 1 AA3 2 SER A 112 HIS A 114 0 SHEET 2 AA3 2 PHE A 117 ALA A 119 -1 O ALA A 119 N SER A 112 LINK NE2 HIS A 186 P H2U A 404 1555 1555 1.68 LINK OE1 GLU A 202 ZN ZN A 401 1555 1555 2.48 LINK OE2 GLU A 202 ZN ZN A 401 1555 1555 1.93 LINK ND1 HIS A 301 ZN ZN A 401 1555 1555 2.09 LINK NE2 HIS A 319 ZN ZN A 401 1555 1555 2.14 LINK NE2 HIS A 321 ZN ZN A 401 1555 1555 2.16 SITE 1 AC1 4 GLU A 202 HIS A 301 HIS A 319 HIS A 321 SITE 1 AC2 3 HIS A 260 HOH A 697 HOH A 763 SITE 1 AC3 6 GLN A 188 H2U A 404 HOH A 517 HOH A 518 SITE 2 AC3 6 HOH A 641 HOH A 755 SITE 1 AC4 15 PRO A 73 ALA A 81 PHE A 95 ASN A 97 SITE 2 AC4 15 ASP A 98 CYS A 180 HIS A 186 GLN A 188 SITE 3 AC4 15 EDO A 403 HOH A 567 HOH A 568 HOH A 661 SITE 4 AC4 15 HOH A 678 HOH A 696 HOH A 741 CRYST1 72.647 96.748 55.426 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018042 0.00000