HEADER LIPID TRANSPORT 07-JUN-18 6GQF TITLE THE STRUCTURE OF MOUSE ASTERA (GRAMD1A) WITH 25-HYDROXY CHOLESTEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRAM DOMAIN-CONTAINING PROTEIN 1A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GRAMD1A, D7BWG0611E, KIAA1533; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS CHOLESTEROL, PLASMA MEMBRANE, ENDOPLASMIC RETICULUM, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR L.FAIRALL,J.E.GURNETT,D.VASHI,J.SANDHU,P.TONTONOZ,J.W.R.SCHWABE REVDAT 3 17-JAN-24 6GQF 1 COMPND REVDAT 2 17-OCT-18 6GQF 1 COMPND JRNL REVDAT 1 26-SEP-18 6GQF 0 JRNL AUTH J.SANDHU,S.LI,L.FAIRALL,S.G.PFISTERER,J.E.GURNETT,X.XIAO, JRNL AUTH 2 T.A.WESTON,D.VASHI,A.FERRARI,J.L.OROZCO,C.L.HARTMAN, JRNL AUTH 3 D.STRUGATSKY,S.D.LEE,C.HE,C.HONG,H.JIANG,L.A.BENTOLILA, JRNL AUTH 4 A.T.GATTA,T.P.LEVINE,A.FERNG,R.LEE,D.A.FORD,S.G.YOUNG, JRNL AUTH 5 E.IKONEN,J.W.R.SCHWABE,P.TONTONOZ JRNL TITL ASTER PROTEINS FACILITATE NONVESICULAR PLASMA MEMBRANE TO ER JRNL TITL 2 CHOLESTEROL TRANSPORT IN MAMMALIAN CELLS. JRNL REF CELL V. 175 514 2018 JRNL REFN ISSN 1097-4172 JRNL PMID 30220461 JRNL DOI 10.1016/J.CELL.2018.08.033 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 18413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.2211 - 5.2691 0.99 2956 156 0.1933 0.2416 REMARK 3 2 5.2691 - 4.1825 0.99 2967 142 0.1761 0.2158 REMARK 3 3 4.1825 - 3.6538 0.99 2922 133 0.2065 0.2931 REMARK 3 4 3.6538 - 3.3198 0.99 2943 111 0.2234 0.2951 REMARK 3 5 3.3198 - 3.0818 0.99 2903 138 0.2340 0.3298 REMARK 3 6 3.0818 - 2.9001 0.99 2878 164 0.2590 0.3149 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5596 REMARK 3 ANGLE : 0.782 7593 REMARK 3 CHIRALITY : 0.034 844 REMARK 3 PLANARITY : 0.003 938 REMARK 3 DIHEDRAL : 11.114 2039 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18439 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 67.203 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YQJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M SODIUM CACODYLATE REMARK 280 PH6, 8% PEG 8000, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.50600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 332 REMARK 465 ALA A 333 REMARK 465 GLY A 334 REMARK 465 PRO A 335 REMARK 465 LEU A 336 REMARK 465 ASP A 337 REMARK 465 LEU A 338 REMARK 465 LEU A 339 REMARK 465 SER A 340 REMARK 465 ARG A 341 REMARK 465 GLU A 342 REMARK 465 GLU A 343 REMARK 465 LEU A 344 REMARK 465 LEU A 345 REMARK 465 THR A 346 REMARK 465 ASP A 347 REMARK 465 THR A 348 REMARK 465 SER A 349 REMARK 465 ASN A 350 REMARK 465 SER A 351 REMARK 465 SER A 352 REMARK 465 SER A 353 REMARK 465 SER A 354 REMARK 465 THR A 355 REMARK 465 GLY A 356 REMARK 465 GLU A 357 REMARK 465 GLU A 358 REMARK 465 GLY A 359 REMARK 465 ASP A 360 REMARK 465 LEU A 361 REMARK 465 ALA A 362 REMARK 465 ALA A 363 REMARK 465 GLY A 452 REMARK 465 PRO A 453 REMARK 465 GLN A 454 REMARK 465 ALA A 455 REMARK 465 GLY A 456 REMARK 465 LYS A 537 REMARK 465 LEU A 538 REMARK 465 SER A 539 REMARK 465 LEU A 540 REMARK 465 GLU A 541 REMARK 465 GLU A 542 REMARK 465 GLY A 543 REMARK 465 GLY A 544 REMARK 465 LYS A 545 REMARK 465 ASP A 546 REMARK 465 THR A 547 REMARK 465 ARG A 548 REMARK 465 GLY A 549 REMARK 465 LEU A 550 REMARK 465 LEU A 551 REMARK 465 SER A 552 REMARK 465 GLY A 553 REMARK 465 LEU A 554 REMARK 465 ARG A 555 REMARK 465 ARG A 556 REMARK 465 ARG A 557 REMARK 465 LYS A 558 REMARK 465 ARG A 559 REMARK 465 PRO A 560 REMARK 465 LEU A 561 REMARK 465 SER A 562 REMARK 465 GLY B 332 REMARK 465 ALA B 333 REMARK 465 GLY B 334 REMARK 465 PRO B 335 REMARK 465 LEU B 336 REMARK 465 ASP B 337 REMARK 465 LEU B 338 REMARK 465 LEU B 339 REMARK 465 SER B 340 REMARK 465 ARG B 341 REMARK 465 GLU B 342 REMARK 465 GLU B 343 REMARK 465 LEU B 344 REMARK 465 LEU B 345 REMARK 465 THR B 346 REMARK 465 ASP B 347 REMARK 465 THR B 348 REMARK 465 SER B 349 REMARK 465 ASN B 350 REMARK 465 SER B 351 REMARK 465 SER B 352 REMARK 465 SER B 353 REMARK 465 SER B 354 REMARK 465 THR B 355 REMARK 465 GLY B 356 REMARK 465 GLU B 357 REMARK 465 GLU B 358 REMARK 465 GLY B 359 REMARK 465 ASP B 360 REMARK 465 LEU B 361 REMARK 465 ALA B 362 REMARK 465 ALA B 363 REMARK 465 LEU B 364 REMARK 465 GLY B 452 REMARK 465 PRO B 453 REMARK 465 GLN B 454 REMARK 465 ALA B 455 REMARK 465 GLY B 456 REMARK 465 GLY B 457 REMARK 465 LYS B 534 REMARK 465 ALA B 535 REMARK 465 GLU B 536 REMARK 465 LYS B 537 REMARK 465 LEU B 538 REMARK 465 SER B 539 REMARK 465 LEU B 540 REMARK 465 GLU B 541 REMARK 465 GLU B 542 REMARK 465 GLY B 543 REMARK 465 GLY B 544 REMARK 465 LYS B 545 REMARK 465 ASP B 546 REMARK 465 THR B 547 REMARK 465 ARG B 548 REMARK 465 GLY B 549 REMARK 465 LEU B 550 REMARK 465 LEU B 551 REMARK 465 SER B 552 REMARK 465 GLY B 553 REMARK 465 LEU B 554 REMARK 465 ARG B 555 REMARK 465 ARG B 556 REMARK 465 ARG B 557 REMARK 465 LYS B 558 REMARK 465 ARG B 559 REMARK 465 PRO B 560 REMARK 465 LEU B 561 REMARK 465 SER B 562 REMARK 465 GLY C 332 REMARK 465 ALA C 333 REMARK 465 GLY C 334 REMARK 465 PRO C 335 REMARK 465 LEU C 336 REMARK 465 ASP C 337 REMARK 465 LEU C 338 REMARK 465 LEU C 339 REMARK 465 SER C 340 REMARK 465 ARG C 341 REMARK 465 GLU C 342 REMARK 465 GLU C 343 REMARK 465 LEU C 344 REMARK 465 LEU C 345 REMARK 465 THR C 346 REMARK 465 ASP C 347 REMARK 465 THR C 348 REMARK 465 SER C 349 REMARK 465 ASN C 350 REMARK 465 SER C 351 REMARK 465 SER C 352 REMARK 465 SER C 353 REMARK 465 SER C 354 REMARK 465 THR C 355 REMARK 465 GLY C 356 REMARK 465 GLU C 357 REMARK 465 GLU C 358 REMARK 465 GLY C 359 REMARK 465 ASP C 360 REMARK 465 LEU C 361 REMARK 465 ALA C 362 REMARK 465 ALA C 363 REMARK 465 LEU C 364 REMARK 465 ASN C 433 REMARK 465 GLN C 434 REMARK 465 LEU C 435 REMARK 465 ARG C 451 REMARK 465 GLY C 452 REMARK 465 PRO C 453 REMARK 465 GLN C 454 REMARK 465 ALA C 455 REMARK 465 GLY C 456 REMARK 465 GLU C 542 REMARK 465 GLY C 543 REMARK 465 GLY C 544 REMARK 465 LYS C 545 REMARK 465 ASP C 546 REMARK 465 THR C 547 REMARK 465 ARG C 548 REMARK 465 GLY C 549 REMARK 465 LEU C 550 REMARK 465 LEU C 551 REMARK 465 SER C 552 REMARK 465 GLY C 553 REMARK 465 LEU C 554 REMARK 465 ARG C 555 REMARK 465 ARG C 556 REMARK 465 ARG C 557 REMARK 465 LYS C 558 REMARK 465 ARG C 559 REMARK 465 PRO C 560 REMARK 465 LEU C 561 REMARK 465 SER C 562 REMARK 465 GLY D 332 REMARK 465 ALA D 333 REMARK 465 GLY D 334 REMARK 465 PRO D 335 REMARK 465 LEU D 336 REMARK 465 ASP D 337 REMARK 465 LEU D 338 REMARK 465 LEU D 339 REMARK 465 SER D 340 REMARK 465 ARG D 341 REMARK 465 GLU D 342 REMARK 465 GLU D 343 REMARK 465 LEU D 344 REMARK 465 LEU D 345 REMARK 465 THR D 346 REMARK 465 ASP D 347 REMARK 465 THR D 348 REMARK 465 SER D 349 REMARK 465 ASN D 350 REMARK 465 SER D 351 REMARK 465 SER D 352 REMARK 465 SER D 353 REMARK 465 SER D 354 REMARK 465 THR D 355 REMARK 465 GLY D 356 REMARK 465 GLU D 357 REMARK 465 GLU D 358 REMARK 465 GLY D 359 REMARK 465 ASP D 360 REMARK 465 LEU D 361 REMARK 465 ALA D 362 REMARK 465 ALA D 363 REMARK 465 LEU D 364 REMARK 465 SER D 432 REMARK 465 ASN D 433 REMARK 465 GLN D 434 REMARK 465 LEU D 435 REMARK 465 GLY D 436 REMARK 465 PRO D 437 REMARK 465 LEU D 538 REMARK 465 SER D 539 REMARK 465 LEU D 540 REMARK 465 GLU D 541 REMARK 465 GLU D 542 REMARK 465 GLY D 543 REMARK 465 GLY D 544 REMARK 465 LYS D 545 REMARK 465 ASP D 546 REMARK 465 THR D 547 REMARK 465 ARG D 548 REMARK 465 GLY D 549 REMARK 465 LEU D 550 REMARK 465 LEU D 551 REMARK 465 SER D 552 REMARK 465 GLY D 553 REMARK 465 LEU D 554 REMARK 465 ARG D 555 REMARK 465 ARG D 556 REMARK 465 ARG D 557 REMARK 465 LYS D 558 REMARK 465 ARG D 559 REMARK 465 PRO D 560 REMARK 465 LEU D 561 REMARK 465 SER D 562 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 364 CG CD1 CD2 REMARK 470 GLN A 434 CG CD OE1 NE2 REMARK 470 LEU B 365 CG CD1 CD2 REMARK 470 SER B 369 OG REMARK 470 PHE B 378 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 379 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 383 CG CD OE1 OE2 REMARK 470 LEU B 385 CG CD1 CD2 REMARK 470 SER B 391 OG REMARK 470 GLN B 397 CG CD OE1 NE2 REMARK 470 ARG B 403 CG CD NE CZ NH1 NH2 REMARK 470 SER B 415 OG REMARK 470 ASP B 416 CG OD1 OD2 REMARK 470 SER B 417 OG REMARK 470 LYS B 418 CG CD CE NZ REMARK 470 LEU B 486 CG CD1 CD2 REMARK 470 ARG B 488 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 489 CG OD1 ND2 REMARK 470 LYS B 490 CG CD CE NZ REMARK 470 LYS C 438 CG CD CE NZ REMARK 470 GLU C 541 CG CD OE1 OE2 REMARK 470 ARG D 384 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 418 CG CD CE NZ REMARK 470 ILE D 431 CG1 CG2 CD1 REMARK 470 LYS D 438 CG CD CE NZ REMARK 470 ILE D 469 CG1 CG2 CD1 REMARK 470 ARG D 488 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 489 CG OD1 ND2 REMARK 470 LYS D 490 CG CD CE NZ REMARK 470 GLU D 514 CG CD OE1 OE2 REMARK 470 ASP D 523 CG OD1 OD2 REMARK 470 LEU D 532 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 369 49.69 -81.67 REMARK 500 ASN A 375 75.25 -156.27 REMARK 500 HIS A 379 41.13 -89.92 REMARK 500 GLN A 434 71.43 -59.46 REMARK 500 PHE B 390 57.20 -108.25 REMARK 500 PRO B 412 -170.35 -67.94 REMARK 500 SER B 415 48.90 -140.67 REMARK 500 GLN B 434 -17.54 70.21 REMARK 500 ALA B 487 -165.68 -160.88 REMARK 500 SER C 369 66.02 -65.44 REMARK 500 ASP C 416 -167.16 -109.05 REMARK 500 CYS C 458 141.54 179.31 REMARK 500 ALA C 487 -152.93 -128.14 REMARK 500 ASN C 489 55.62 -107.64 REMARK 500 LYS C 534 30.03 -84.88 REMARK 500 LEU C 540 37.46 -91.05 REMARK 500 PRO D 366 -171.48 -67.50 REMARK 500 ASN D 375 79.21 -153.32 REMARK 500 PHE D 390 51.28 -116.89 REMARK 500 ASP D 392 74.58 -69.78 REMARK 500 ARG D 451 41.21 -80.70 REMARK 500 ALA D 455 -154.57 55.38 REMARK 500 LYS D 490 117.52 -171.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 530 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HC3 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HC3 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HC3 C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HC3 D 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 602 DBREF 6GQF A 334 562 UNP Q8VEF1 GRM1A_MOUSE 334 562 DBREF 6GQF B 334 562 UNP Q8VEF1 GRM1A_MOUSE 334 562 DBREF 6GQF C 334 562 UNP Q8VEF1 GRM1A_MOUSE 334 562 DBREF 6GQF D 334 562 UNP Q8VEF1 GRM1A_MOUSE 334 562 SEQADV 6GQF GLY A 332 UNP Q8VEF1 EXPRESSION TAG SEQADV 6GQF ALA A 333 UNP Q8VEF1 EXPRESSION TAG SEQADV 6GQF GLY B 332 UNP Q8VEF1 EXPRESSION TAG SEQADV 6GQF ALA B 333 UNP Q8VEF1 EXPRESSION TAG SEQADV 6GQF GLY C 332 UNP Q8VEF1 EXPRESSION TAG SEQADV 6GQF ALA C 333 UNP Q8VEF1 EXPRESSION TAG SEQADV 6GQF GLY D 332 UNP Q8VEF1 EXPRESSION TAG SEQADV 6GQF ALA D 333 UNP Q8VEF1 EXPRESSION TAG SEQRES 1 A 231 GLY ALA GLY PRO LEU ASP LEU LEU SER ARG GLU GLU LEU SEQRES 2 A 231 LEU THR ASP THR SER ASN SER SER SER SER THR GLY GLU SEQRES 3 A 231 GLU GLY ASP LEU ALA ALA LEU LEU PRO ASP LEU SER GLY SEQRES 4 A 231 ARG LEU LEU ILE ASN SER VAL PHE HIS MET GLY ALA GLU SEQRES 5 A 231 ARG LEU GLN GLN MET LEU PHE SER ASP SER PRO PHE LEU SEQRES 6 A 231 GLN GLY PHE LEU GLN GLN ARG LYS PHE THR ASP VAL THR SEQRES 7 A 231 LEU SER PRO TRP SER SER ASP SER LYS CYS HIS GLN ARG SEQRES 8 A 231 ARG VAL LEU THR TYR THR ILE PRO ILE SER ASN GLN LEU SEQRES 9 A 231 GLY PRO LYS SER ALA SER VAL VAL GLU THR GLN THR LEU SEQRES 10 A 231 PHE ARG ARG GLY PRO GLN ALA GLY GLY CYS VAL VAL ASP SEQRES 11 A 231 SER GLU VAL LEU THR GLN GLY ILE PRO TYR GLN ASP TYR SEQRES 12 A 231 PHE TYR THR ALA HIS ARG TYR CYS ILE LEU GLY LEU ALA SEQRES 13 A 231 ARG ASN LYS ALA ARG LEU ARG VAL SER SER GLU ILE ARG SEQRES 14 A 231 TYR ARG LYS GLN PRO TRP SER LEU VAL LYS SER LEU ILE SEQRES 15 A 231 GLU LYS ASN SER TRP SER GLY ILE GLU ASP TYR PHE HIS SEQRES 16 A 231 HIS LEU ASP ARG GLU LEU ALA LYS ALA GLU LYS LEU SER SEQRES 17 A 231 LEU GLU GLU GLY GLY LYS ASP THR ARG GLY LEU LEU SER SEQRES 18 A 231 GLY LEU ARG ARG ARG LYS ARG PRO LEU SER SEQRES 1 B 231 GLY ALA GLY PRO LEU ASP LEU LEU SER ARG GLU GLU LEU SEQRES 2 B 231 LEU THR ASP THR SER ASN SER SER SER SER THR GLY GLU SEQRES 3 B 231 GLU GLY ASP LEU ALA ALA LEU LEU PRO ASP LEU SER GLY SEQRES 4 B 231 ARG LEU LEU ILE ASN SER VAL PHE HIS MET GLY ALA GLU SEQRES 5 B 231 ARG LEU GLN GLN MET LEU PHE SER ASP SER PRO PHE LEU SEQRES 6 B 231 GLN GLY PHE LEU GLN GLN ARG LYS PHE THR ASP VAL THR SEQRES 7 B 231 LEU SER PRO TRP SER SER ASP SER LYS CYS HIS GLN ARG SEQRES 8 B 231 ARG VAL LEU THR TYR THR ILE PRO ILE SER ASN GLN LEU SEQRES 9 B 231 GLY PRO LYS SER ALA SER VAL VAL GLU THR GLN THR LEU SEQRES 10 B 231 PHE ARG ARG GLY PRO GLN ALA GLY GLY CYS VAL VAL ASP SEQRES 11 B 231 SER GLU VAL LEU THR GLN GLY ILE PRO TYR GLN ASP TYR SEQRES 12 B 231 PHE TYR THR ALA HIS ARG TYR CYS ILE LEU GLY LEU ALA SEQRES 13 B 231 ARG ASN LYS ALA ARG LEU ARG VAL SER SER GLU ILE ARG SEQRES 14 B 231 TYR ARG LYS GLN PRO TRP SER LEU VAL LYS SER LEU ILE SEQRES 15 B 231 GLU LYS ASN SER TRP SER GLY ILE GLU ASP TYR PHE HIS SEQRES 16 B 231 HIS LEU ASP ARG GLU LEU ALA LYS ALA GLU LYS LEU SER SEQRES 17 B 231 LEU GLU GLU GLY GLY LYS ASP THR ARG GLY LEU LEU SER SEQRES 18 B 231 GLY LEU ARG ARG ARG LYS ARG PRO LEU SER SEQRES 1 C 231 GLY ALA GLY PRO LEU ASP LEU LEU SER ARG GLU GLU LEU SEQRES 2 C 231 LEU THR ASP THR SER ASN SER SER SER SER THR GLY GLU SEQRES 3 C 231 GLU GLY ASP LEU ALA ALA LEU LEU PRO ASP LEU SER GLY SEQRES 4 C 231 ARG LEU LEU ILE ASN SER VAL PHE HIS MET GLY ALA GLU SEQRES 5 C 231 ARG LEU GLN GLN MET LEU PHE SER ASP SER PRO PHE LEU SEQRES 6 C 231 GLN GLY PHE LEU GLN GLN ARG LYS PHE THR ASP VAL THR SEQRES 7 C 231 LEU SER PRO TRP SER SER ASP SER LYS CYS HIS GLN ARG SEQRES 8 C 231 ARG VAL LEU THR TYR THR ILE PRO ILE SER ASN GLN LEU SEQRES 9 C 231 GLY PRO LYS SER ALA SER VAL VAL GLU THR GLN THR LEU SEQRES 10 C 231 PHE ARG ARG GLY PRO GLN ALA GLY GLY CYS VAL VAL ASP SEQRES 11 C 231 SER GLU VAL LEU THR GLN GLY ILE PRO TYR GLN ASP TYR SEQRES 12 C 231 PHE TYR THR ALA HIS ARG TYR CYS ILE LEU GLY LEU ALA SEQRES 13 C 231 ARG ASN LYS ALA ARG LEU ARG VAL SER SER GLU ILE ARG SEQRES 14 C 231 TYR ARG LYS GLN PRO TRP SER LEU VAL LYS SER LEU ILE SEQRES 15 C 231 GLU LYS ASN SER TRP SER GLY ILE GLU ASP TYR PHE HIS SEQRES 16 C 231 HIS LEU ASP ARG GLU LEU ALA LYS ALA GLU LYS LEU SER SEQRES 17 C 231 LEU GLU GLU GLY GLY LYS ASP THR ARG GLY LEU LEU SER SEQRES 18 C 231 GLY LEU ARG ARG ARG LYS ARG PRO LEU SER SEQRES 1 D 231 GLY ALA GLY PRO LEU ASP LEU LEU SER ARG GLU GLU LEU SEQRES 2 D 231 LEU THR ASP THR SER ASN SER SER SER SER THR GLY GLU SEQRES 3 D 231 GLU GLY ASP LEU ALA ALA LEU LEU PRO ASP LEU SER GLY SEQRES 4 D 231 ARG LEU LEU ILE ASN SER VAL PHE HIS MET GLY ALA GLU SEQRES 5 D 231 ARG LEU GLN GLN MET LEU PHE SER ASP SER PRO PHE LEU SEQRES 6 D 231 GLN GLY PHE LEU GLN GLN ARG LYS PHE THR ASP VAL THR SEQRES 7 D 231 LEU SER PRO TRP SER SER ASP SER LYS CYS HIS GLN ARG SEQRES 8 D 231 ARG VAL LEU THR TYR THR ILE PRO ILE SER ASN GLN LEU SEQRES 9 D 231 GLY PRO LYS SER ALA SER VAL VAL GLU THR GLN THR LEU SEQRES 10 D 231 PHE ARG ARG GLY PRO GLN ALA GLY GLY CYS VAL VAL ASP SEQRES 11 D 231 SER GLU VAL LEU THR GLN GLY ILE PRO TYR GLN ASP TYR SEQRES 12 D 231 PHE TYR THR ALA HIS ARG TYR CYS ILE LEU GLY LEU ALA SEQRES 13 D 231 ARG ASN LYS ALA ARG LEU ARG VAL SER SER GLU ILE ARG SEQRES 14 D 231 TYR ARG LYS GLN PRO TRP SER LEU VAL LYS SER LEU ILE SEQRES 15 D 231 GLU LYS ASN SER TRP SER GLY ILE GLU ASP TYR PHE HIS SEQRES 16 D 231 HIS LEU ASP ARG GLU LEU ALA LYS ALA GLU LYS LEU SER SEQRES 17 D 231 LEU GLU GLU GLY GLY LYS ASP THR ARG GLY LEU LEU SER SEQRES 18 D 231 GLY LEU ARG ARG ARG LYS ARG PRO LEU SER HET HC3 A 601 29 HET GOL A 602 6 HET HC3 B 601 29 HET GOL B 602 6 HET HC3 C 601 29 HET GOL C 602 6 HET HC3 D 601 29 HET GOL D 602 6 HETNAM HC3 25-HYDROXYCHOLESTEROL HETNAM GOL GLYCEROL HETSYN HC3 (3BETA)-CHOLEST-5-ENE-3,25-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 HC3 4(C27 H46 O2) FORMUL 6 GOL 4(C3 H8 O3) HELIX 1 AA1 GLY A 381 PHE A 390 1 10 HELIX 2 AA2 SER A 393 ARG A 403 1 11 HELIX 3 AA3 TRP A 506 LYS A 534 1 29 HELIX 4 AA4 GLY B 381 PHE B 390 1 10 HELIX 5 AA5 SER B 393 ARG B 403 1 11 HELIX 6 AA6 TRP B 506 GLU B 531 1 26 HELIX 7 AA7 GLY C 381 PHE C 390 1 10 HELIX 8 AA8 SER C 393 ARG C 403 1 11 HELIX 9 AA9 TYR C 471 ASP C 473 5 3 HELIX 10 AB1 TRP C 506 ALA C 533 1 28 HELIX 11 AB2 ALA C 535 LEU C 540 1 6 HELIX 12 AB3 GLY D 381 PHE D 390 1 10 HELIX 13 AB4 SER D 393 ARG D 403 1 11 HELIX 14 AB5 GLY D 452 ALA D 455 5 4 HELIX 15 AB6 TRP D 506 ALA D 535 1 30 SHEET 1 AA1 7 ARG A 371 PHE A 378 0 SHEET 2 AA1 7 LYS A 490 TYR A 501 -1 O ALA A 491 N PHE A 378 SHEET 3 AA1 7 PHE A 475 ALA A 487 -1 N LEU A 486 O LYS A 490 SHEET 4 AA1 7 CYS A 458 GLN A 467 -1 N CYS A 458 O ILE A 483 SHEET 5 AA1 7 SER A 439 PHE A 449 -1 N PHE A 449 O VAL A 459 SHEET 6 AA1 7 GLN A 421 PRO A 430 -1 N ILE A 429 O ALA A 440 SHEET 7 AA1 7 THR A 406 LEU A 410 -1 N THR A 406 O THR A 428 SHEET 1 AA2 7 ARG B 371 PHE B 378 0 SHEET 2 AA2 7 LYS B 490 TYR B 501 -1 O VAL B 495 N LEU B 373 SHEET 3 AA2 7 PHE B 475 ALA B 487 -1 N LEU B 484 O ARG B 492 SHEET 4 AA2 7 VAL B 459 GLN B 467 -1 N SER B 462 O HIS B 479 SHEET 5 AA2 7 SER B 439 PHE B 449 -1 N VAL B 443 O LEU B 465 SHEET 6 AA2 7 HIS B 420 PRO B 430 -1 N ILE B 429 O ALA B 440 SHEET 7 AA2 7 THR B 406 LEU B 410 -1 N THR B 406 O THR B 428 SHEET 1 AA3 7 ARG C 371 PHE C 378 0 SHEET 2 AA3 7 LYS C 490 TYR C 501 -1 O LEU C 493 N SER C 376 SHEET 3 AA3 7 PHE C 475 ALA C 487 -1 N ALA C 478 O GLU C 498 SHEET 4 AA3 7 CYS C 458 GLN C 467 -1 N SER C 462 O HIS C 479 SHEET 5 AA3 7 ALA C 440 PHE C 449 -1 N PHE C 449 O VAL C 459 SHEET 6 AA3 7 ARG C 422 ILE C 429 -1 N LEU C 425 O GLU C 444 SHEET 7 AA3 7 THR C 406 LEU C 410 -1 N THR C 406 O THR C 428 SHEET 1 AA4 7 ARG D 371 PHE D 378 0 SHEET 2 AA4 7 LYS D 490 TYR D 501 -1 O ALA D 491 N PHE D 378 SHEET 3 AA4 7 PHE D 475 ALA D 487 -1 N TYR D 476 O ARG D 500 SHEET 4 AA4 7 GLY D 457 GLN D 467 -1 N SER D 462 O HIS D 479 SHEET 5 AA4 7 ALA D 440 ARG D 450 -1 N PHE D 449 O VAL D 459 SHEET 6 AA4 7 GLN D 421 ILE D 429 -1 N LEU D 425 O GLU D 444 SHEET 7 AA4 7 THR D 406 LEU D 410 -1 N THR D 406 O THR D 428 SHEET 1 AA5 7 ARG D 371 PHE D 378 0 SHEET 2 AA5 7 LYS D 490 TYR D 501 -1 O ALA D 491 N PHE D 378 SHEET 3 AA5 7 PHE D 475 ALA D 487 -1 N TYR D 476 O ARG D 500 SHEET 4 AA5 7 GLY D 457 GLN D 467 -1 N SER D 462 O HIS D 479 SHEET 5 AA5 7 ALA D 440 ARG D 450 -1 N PHE D 449 O VAL D 459 SHEET 6 AA5 7 GLN D 421 ILE D 429 -1 N LEU D 425 O GLU D 444 SHEET 7 AA5 7 SER D 414 SER D 415 -1 N SER D 414 O ARG D 422 SSBOND 1 CYS A 419 CYS D 419 1555 1555 2.03 SSBOND 2 CYS B 419 CYS C 419 1555 1555 2.03 SITE 1 AC1 11 TYR A 427 ILE A 429 ASN A 433 LEU A 435 SITE 2 AC1 11 PRO A 470 THR A 477 HIS A 479 ASN A 516 SITE 3 AC1 11 SER A 517 TYR A 524 GOL A 602 SITE 1 AC2 9 LEU A 389 ARG A 423 LEU A 425 TYR A 427 SITE 2 AC2 9 GLU A 444 GLN A 446 TYR A 481 TYR A 524 SITE 3 AC2 9 HC3 A 601 SITE 1 AC3 10 TYR B 427 ILE B 429 GLU B 444 PRO B 470 SITE 2 AC3 10 THR B 477 HIS B 479 ASN B 516 SER B 517 SITE 3 AC3 10 TYR B 524 GOL B 602 SITE 1 AC4 7 LEU B 389 ARG B 423 GLU B 444 GLN B 446 SITE 2 AC4 7 TYR B 481 TYR B 524 HC3 B 601 SITE 1 AC5 10 TYR C 427 ILE C 429 ILE C 431 VAL C 464 SITE 2 AC5 10 PRO C 470 THR C 477 HIS C 479 SER C 517 SITE 3 AC5 10 TYR C 524 GOL C 602 SITE 1 AC6 8 LEU C 389 PHE C 390 ARG C 423 GLU C 444 SITE 2 AC6 8 GLN C 446 TYR C 481 TYR C 524 HC3 C 601 SITE 1 AC7 10 TYR D 427 ILE D 429 GLU D 444 PRO D 470 SITE 2 AC7 10 THR D 477 HIS D 479 ASN D 516 SER D 517 SITE 3 AC7 10 TYR D 524 GOL D 602 SITE 1 AC8 7 LEU D 389 PHE D 390 ARG D 423 GLN D 446 SITE 2 AC8 7 TYR D 481 TYR D 524 HC3 D 601 CRYST1 52.435 121.012 71.907 90.00 110.84 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019071 0.000000 0.007259 0.00000 SCALE2 0.000000 0.008264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014880 0.00000