HEADER DNA 11-JUN-18 6GRB TITLE EUKARYOTIC JUNCTION-RESOLVING ENZYME GEN-1 BINDING WITH POTASSIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)- COMPND 7 3'); COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)- COMPND 12 3'); COMPND 13 CHAIN: R; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS SOURCE 3 144.50 / IMI 039719); SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 GENE: CTHT_0007290; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS 4-WAY HOLIDAY JUNCTION, RESOLVASE, DNA RECOMBINATION, GEN1, H2TH, KEYWDS 2 POTASSIUM, DNA EXPDTA X-RAY DIFFRACTION AUTHOR D.M.J.LILLEY,Y.LIU,D.J.FREEMAN REVDAT 4 17-JAN-24 6GRB 1 REMARK REVDAT 3 28-NOV-18 6GRB 1 JRNL REVDAT 2 03-OCT-18 6GRB 1 JRNL REVDAT 1 26-SEP-18 6GRB 0 JRNL AUTH Y.LIU,A.D.FREEMAN,A.C.DECLAIS,D.M.J.LILLEY JRNL TITL A MONOVALENT ION IN THE DNA BINDING INTERFACE OF THE JRNL TITL 2 EUKARYOTIC JUNCTION-RESOLVING ENZYME GEN1. JRNL REF NUCLEIC ACIDS RES. V. 46 11089 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30247722 JRNL DOI 10.1093/NAR/GKY863 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 26393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.2554 - 5.1700 0.99 2628 147 0.2272 0.2577 REMARK 3 2 5.1700 - 4.1037 0.99 2520 139 0.2068 0.2473 REMARK 3 3 4.1037 - 3.5850 0.99 2508 143 0.2310 0.2342 REMARK 3 4 3.5850 - 3.2572 1.00 2543 115 0.2436 0.2711 REMARK 3 5 3.2572 - 3.0238 1.00 2468 144 0.2737 0.2987 REMARK 3 6 3.0238 - 2.8455 1.00 2475 135 0.2994 0.3391 REMARK 3 7 2.8455 - 2.7030 1.00 2504 125 0.3162 0.3379 REMARK 3 8 2.7030 - 2.5853 1.00 2472 141 0.3410 0.3686 REMARK 3 9 2.5853 - 2.4858 1.00 2482 117 0.3501 0.3681 REMARK 3 10 2.4858 - 2.4000 1.00 2458 129 0.3601 0.3781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3713 REMARK 3 ANGLE : 1.100 5177 REMARK 3 CHIRALITY : 0.058 592 REMARK 3 PLANARITY : 0.008 567 REMARK 3 DIHEDRAL : 24.452 1361 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 16.7412 -24.4044 -15.5058 REMARK 3 T TENSOR REMARK 3 T11: 0.5262 T22: 0.3653 REMARK 3 T33: 0.3966 T12: -0.0207 REMARK 3 T13: 0.0349 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.9900 L22: 1.3406 REMARK 3 L33: 1.8029 L12: -0.1064 REMARK 3 L13: 0.3581 L23: 0.5072 REMARK 3 S TENSOR REMARK 3 S11: 0.1199 S12: 0.0042 S13: -0.1252 REMARK 3 S21: 0.1799 S22: -0.0403 S23: -0.2680 REMARK 3 S31: 0.2986 S32: 0.0676 S33: -0.0705 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GRB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26441 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 84.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5CNQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES PH 7.0 20% PEG 10000, REMARK 280 EVAPORATION, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.92033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.84067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.84067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.92033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 84 REMARK 465 ILE A 85 REMARK 465 PHE A 86 REMARK 465 LYS A 87 REMARK 465 ARG A 88 REMARK 465 ASN A 89 REMARK 465 ARG A 90 REMARK 465 ARG A 91 REMARK 465 SER A 92 REMARK 465 GLY A 93 REMARK 465 THR A 94 REMARK 465 GLY A 95 REMARK 465 ASN A 96 REMARK 465 GLY A 97 REMARK 465 VAL A 98 REMARK 465 GLY A 160 REMARK 465 SER A 161 REMARK 465 LYS A 162 REMARK 465 ALA A 231 REMARK 465 ASP A 232 REMARK 465 LYS A 233 REMARK 465 GLU A 234 REMARK 465 TYR A 342 REMARK 465 VAL A 343 REMARK 465 SER A 344 REMARK 465 GLY A 345 REMARK 465 PRO A 346 REMARK 465 ARG A 347 REMARK 465 ILE A 348 REMARK 465 ASP A 349 REMARK 465 ASP A 350 REMARK 465 PRO A 351 REMARK 465 ASP A 352 REMARK 465 LEU A 353 REMARK 465 LYS A 354 REMARK 465 LYS A 355 REMARK 465 GLN A 401 REMARK 465 VAL A 402 REMARK 465 GLU A 403 REMARK 465 ALA A 404 REMARK 465 PHE A 405 REMARK 465 GLY A 406 REMARK 465 ARG A 407 REMARK 465 SER A 408 REMARK 465 GLY A 409 REMARK 465 LEU A 410 REMARK 465 ALA A 411 REMARK 465 LEU A 412 REMARK 465 ASN A 413 REMARK 465 SER A 414 REMARK 465 ASP A 415 REMARK 465 ASP A 416 REMARK 465 GLU A 417 REMARK 465 PHE A 418 REMARK 465 ASP A 419 REMARK 465 GLU A 420 REMARK 465 ASP A 421 REMARK 465 ILE A 422 REMARK 465 SER A 423 REMARK 465 SER A 424 REMARK 465 SER A 425 REMARK 465 GLN A 426 REMARK 465 LYS A 427 REMARK 465 ALA A 428 REMARK 465 PRO A 429 REMARK 465 LYS A 430 REMARK 465 LYS A 466 REMARK 465 GLY A 467 REMARK 465 ARG A 468 REMARK 465 ALA A 469 REMARK 465 LYS A 470 REMARK 465 GLU A 471 REMARK 465 ASP A 472 REMARK 465 LYS A 473 REMARK 465 THR A 474 REMARK 465 ALA A 475 REMARK 465 ALA A 476 REMARK 465 LYS A 477 REMARK 465 ALA A 478 REMARK 465 LYS A 479 REMARK 465 ARG A 480 REMARK 465 LYS A 481 REMARK 465 THR A 482 REMARK 465 LYS A 483 REMARK 465 ILE A 484 REMARK 465 ILE A 485 REMARK 465 GLN A 486 REMARK 465 SER A 487 REMARK 465 ASN A 488 REMARK 465 MET A 489 REMARK 465 PRO A 490 REMARK 465 ALA A 491 REMARK 465 GLY A 492 REMARK 465 ALA A 493 REMARK 465 LEU A 494 REMARK 465 ASP A 495 REMARK 465 LYS A 496 REMARK 465 TYR A 497 REMARK 465 VAL A 498 REMARK 465 THR A 499 REMARK 465 VAL A 500 REMARK 465 THR A 501 REMARK 465 LYS A 502 REMARK 465 ASN A 503 REMARK 465 ILE A 504 REMARK 465 SER A 505 REMARK 465 ASP A 506 REMARK 465 THR A 507 REMARK 465 THR A 508 REMARK 465 VAL A 509 REMARK 465 LYS A 510 REMARK 465 SER A 511 REMARK 465 LYS A 512 REMARK 465 GLU A 513 REMARK 465 SER A 514 REMARK 465 ALA A 515 REMARK 465 PRO A 516 REMARK 465 ILE A 517 REMARK 465 THR A 518 REMARK 465 ILE A 519 REMARK 465 PRO A 520 REMARK 465 SER A 521 REMARK 465 SER A 522 REMARK 465 PRO A 523 REMARK 465 PRO A 524 REMARK 465 LYS A 525 REMARK 465 PRO A 526 REMARK 465 SER A 527 REMARK 465 SER A 528 REMARK 465 GLN A 529 REMARK 465 PRO A 530 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 PHE A 44 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 47 CG CD OE1 NE2 REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 199 CG OD1 OD2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 GLN A 241 CG CD OE1 NE2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 GLU A 266 CG CD OE1 OE2 REMARK 470 ASN A 267 CG OD1 ND2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 ARG A 275 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 293 CG CD OE1 NE2 REMARK 470 SER A 299 OG REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 ARG A 337 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 LEU A 361 CG CD1 CD2 REMARK 470 GLU A 399 CG CD OE1 OE2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 DT H 16 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT H 16 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT H 16 C7 C6 REMARK 470 DT R 0 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT R 0 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT R 0 C7 C6 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 39 N CA C O REMARK 480 MET A 102 N CA C O REMARK 480 MET A 146 N CA C O REMARK 480 MET A 189 N CA C O REMARK 480 MET A 271 N CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG H 29 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT H 30 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC R 10 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA R 15 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 47 4.89 -63.90 REMARK 500 ASP A 141 -169.37 -164.41 REMARK 500 TYR A 200 8.00 -170.38 REMARK 500 ILE A 205 109.94 -56.55 REMARK 500 ARG A 227 44.54 -102.39 REMARK 500 HIS A 259 52.37 -141.03 REMARK 500 LYS A 260 41.70 -79.98 REMARK 500 ALA A 261 -7.80 -153.39 REMARK 500 ASN A 267 48.99 -81.68 REMARK 500 ASN A 270 101.44 -55.61 REMARK 500 SER A 299 -85.59 -85.82 REMARK 500 PHE A 318 -162.76 62.86 REMARK 500 PRO A 435 -7.68 -59.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD2 REMARK 620 2 ASP A 143 OD2 68.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 DBREF 6GRB A 1 530 UNP G0RYN2 G0RYN2_CHATD 1 530 DBREF 6GRB H 16 30 PDB 6GRB 6GRB 16 30 DBREF 6GRB R 0 15 PDB 6GRB 6GRB 0 15 SEQRES 1 A 530 MET GLY ILE LYS GLY ILE TYR LYS GLU ILE GLY SER GLY SEQRES 2 A 530 GLU ARG ILE SER LEU CYS LYS LEU ALA ILE ASP HIS LEU SEQRES 3 A 530 GLU GLN HIS ASN ARG PRO LEU ARG LEU ALA ILE ASP MET SEQRES 4 A 530 ALA ILE TRP GLN PHE GLN ILE GLN ALA ALA ARG GLY GLY SEQRES 5 A 530 SER ASN PRO ALA ILE ARG THR LEU PHE TYR ARG PHE VAL SEQRES 6 A 530 ARG LEU LEU SER LEU GLY ILE HIS PRO ILE PHE VAL PHE SEQRES 7 A 530 ASP GLY PRO ASN LYS PRO ILE PHE LYS ARG ASN ARG ARG SEQRES 8 A 530 SER GLY THR GLY ASN GLY VAL SER THR ALA MET ALA LYS SEQRES 9 A 530 ARG LEU ILE ARG LEU PHE GLY PHE THR ALA HIS ASP ALA SEQRES 10 A 530 PRO GLY GLU ALA GLU ALA GLU CYS ALA TYR LEU GLU GLN SEQRES 11 A 530 GLN GLY ILE VAL ASP ALA VAL LEU SER GLU ASP VAL ASP SEQRES 12 A 530 THR ILE MET PHE GLY SER ARG VAL THR LEU ARG ASP TRP SEQRES 13 A 530 SER SER GLU GLY SER LYS GLY GLY PRO PRO THR HIS VAL SEQRES 14 A 530 THR LEU HIS ASP ALA LYS LYS ILE ALA GLU GLY PRO SER SEQRES 15 A 530 GLY LEU ASP ARG GLU GLY MET VAL LEU VAL ALA LEU MET SEQRES 16 A 530 SER GLY GLY ASP TYR LEU PRO ASP GLY ILE PRO GLY CYS SEQRES 17 A 530 GLY ILE LYS VAL ALA CYS GLN ALA ALA LYS ALA GLY PHE SEQRES 18 A 530 GLY LYS GLU LEU CYS ARG ILE LYS ARG ALA ASP LYS GLU SEQRES 19 A 530 ALA ILE THR GLU TRP LYS GLN ARG LEU LEU HIS GLU LEU SEQRES 20 A 530 ARG THR ASN GLU SER GLY PHE PHE ARG THR LYS HIS LYS SEQRES 21 A 530 ALA LEU GLU ILE PRO GLU ASN PHE PRO ASN MET GLU VAL SEQRES 22 A 530 LEU ARG TYR TYR THR HIS PRO VAL VAL SER SER PRO ALA SEQRES 23 A 530 THR ILE GLU ARG LEU ARG GLN GLU PHE PRO PRO SER SER SEQRES 24 A 530 THR VAL ASP ILE ALA GLY LEU ARG GLU PHE THR ARG GLU SEQRES 25 A 530 THR PHE ASP TRP THR PHE ARG PRO GLY ALA ILE LYS LEU SEQRES 26 A 530 ILE LYS VAL LEU ALA PRO GLY LEU LEU VAL GLN ARG CYS SEQRES 27 A 530 LEU ASP ARG TYR VAL SER GLY PRO ARG ILE ASP ASP PRO SEQRES 28 A 530 ASP LEU LYS LYS LYS GLU GLU SER THR LEU VAL LYS GLY SEQRES 29 A 530 ILE SER MET ARG ARG GLU HIS PHE SER THR ASP ALA THR SEQRES 30 A 530 PRO GLU LEU ARG VAL SER PHE ILE PRO ALA GLU LEU VAL SEQRES 31 A 530 GLY LEU ASP PRO GLY GLN GLU PRO GLU VAL GLN VAL GLU SEQRES 32 A 530 ALA PHE GLY ARG SER GLY LEU ALA LEU ASN SER ASP ASP SEQRES 33 A 530 GLU PHE ASP GLU ASP ILE SER SER SER GLN LYS ALA PRO SEQRES 34 A 530 LYS LYS PRO PHE ASP PRO TRP GLN PRO ASP LEU ALA TRP SEQRES 35 A 530 VAL PRO GLU THR ILE LEU LYS LEU GLY VAL PRO VAL THR SEQRES 36 A 530 VAL GLU ASP TRP GLU GLU GLY GLN ARG SER LYS GLY ARG SEQRES 37 A 530 ALA LYS GLU ASP LYS THR ALA ALA LYS ALA LYS ARG LYS SEQRES 38 A 530 THR LYS ILE ILE GLN SER ASN MET PRO ALA GLY ALA LEU SEQRES 39 A 530 ASP LYS TYR VAL THR VAL THR LYS ASN ILE SER ASP THR SEQRES 40 A 530 THR VAL LYS SER LYS GLU SER ALA PRO ILE THR ILE PRO SEQRES 41 A 530 SER SER PRO PRO LYS PRO SER SER GLN PRO SEQRES 1 H 15 DT DG DA DG DC DG DG DT DG DG DT DT DG SEQRES 2 H 15 DG DT SEQRES 1 R 16 DT DA DC DC DC DA DC DC DA DC DC DG DC SEQRES 2 R 16 DT DC DA HET MG A 601 1 HET MG A 602 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *8(H2 O) HELIX 1 AA1 GLY A 5 GLY A 11 1 7 HELIX 2 AA2 LEU A 18 ASN A 30 1 13 HELIX 3 AA3 ILE A 41 GLN A 47 1 7 HELIX 4 AA4 ASN A 54 GLY A 71 1 18 HELIX 5 AA5 THR A 100 PHE A 110 1 11 HELIX 6 AA6 GLU A 120 GLN A 131 1 12 HELIX 7 AA7 VAL A 142 PHE A 147 1 6 HELIX 8 AA8 ALA A 174 GLU A 179 1 6 HELIX 9 AA9 ASP A 185 GLY A 197 1 13 HELIX 10 AB1 GLY A 209 ALA A 219 1 11 HELIX 11 AB2 GLY A 220 ARG A 227 1 8 HELIX 12 AB3 ILE A 236 ASN A 250 1 15 HELIX 13 AB4 ASN A 270 HIS A 279 1 10 HELIX 14 AB5 SER A 284 PHE A 295 1 12 HELIX 15 AB6 ASP A 302 PHE A 314 1 13 HELIX 16 AB7 THR A 317 ARG A 341 1 25 HELIX 17 AB8 LYS A 356 LEU A 361 5 6 HELIX 18 AB9 PHE A 372 ASP A 375 5 4 HELIX 19 AC1 ILE A 385 GLY A 391 1 7 HELIX 20 AC2 ASP A 393 GLU A 397 5 5 HELIX 21 AC3 GLU A 445 VAL A 452 1 8 HELIX 22 AC4 VAL A 452 SER A 465 1 14 SHEET 1 AA1 7 GLU A 14 SER A 17 0 SHEET 2 AA1 7 HIS A 168 ASP A 173 -1 O LEU A 171 N GLU A 14 SHEET 3 AA1 7 VAL A 151 SER A 157 -1 N THR A 152 O HIS A 172 SHEET 4 AA1 7 ALA A 136 LEU A 138 1 N VAL A 137 O LEU A 153 SHEET 5 AA1 7 ARG A 34 ASP A 38 1 N ALA A 36 O LEU A 138 SHEET 6 AA1 7 HIS A 73 PHE A 78 1 O ILE A 75 N LEU A 35 SHEET 7 AA1 7 THR A 113 ASP A 116 1 O HIS A 115 N PHE A 78 SHEET 1 AA2 3 GLY A 364 GLU A 370 0 SHEET 2 AA2 3 PRO A 378 PHE A 384 -1 O SER A 383 N GLY A 364 SHEET 3 AA2 3 ASP A 439 PRO A 444 -1 O ASP A 439 N PHE A 384 LINK OD2 ASP A 141 MG MG A 601 1555 1555 2.74 LINK OD2 ASP A 143 MG MG A 601 1555 1555 1.94 CISPEP 1 GLY A 2 ILE A 3 0 -5.34 CISPEP 2 PHE A 268 PRO A 269 0 -3.03 CISPEP 3 PHE A 295 PRO A 296 0 2.90 SITE 1 AC1 4 ASP A 141 ASP A 143 MG A 602 DG H 17 SITE 1 AC2 4 GLU A 122 ASP A 141 ASP A 143 MG A 601 CRYST1 97.960 97.960 119.761 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010208 0.005894 0.000000 0.00000 SCALE2 0.000000 0.011787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008350 0.00000