HEADER DNA 11-JUN-18 6GRD TITLE EUKARYOTIC JUNCTION-RESOLVING ENZYME GEN-1 BINDING WITH CESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)- COMPND 7 3'); COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)- COMPND 12 3'); COMPND 13 CHAIN: R; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 GENE: CTHT_0007290; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS 4-WAY HOLIDAY JUNCTION, RESOLVASE, DNA RECOMBINATION, GEN1, H2TH, KEYWDS 2 CESIUM, DNA EXPDTA X-RAY DIFFRACTION AUTHOR D.M.J.LILLEY,Y.LIU,D.J.FREEMAN REVDAT 3 28-NOV-18 6GRD 1 JRNL REVDAT 2 03-OCT-18 6GRD 1 JRNL REVDAT 1 26-SEP-18 6GRD 0 JRNL AUTH Y.LIU,A.D.FREEMAN,A.C.DECLAIS,D.M.J.LILLEY JRNL TITL A MONOVALENT ION IN THE DNA BINDING INTERFACE OF THE JRNL TITL 2 EUKARYOTIC JUNCTION-RESOLVING ENZYME GEN1. JRNL REF NUCLEIC ACIDS RES. V. 46 11089 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30247722 JRNL DOI 10.1093/NAR/GKY863 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.8345 - 6.2539 1.00 2651 143 0.2089 0.2135 REMARK 3 2 6.2539 - 4.9644 1.00 2626 146 0.2312 0.2454 REMARK 3 3 4.9644 - 4.3370 1.00 2687 138 0.2000 0.2200 REMARK 3 4 4.3370 - 3.9405 1.00 2609 136 0.2129 0.2240 REMARK 3 5 3.9405 - 3.6581 1.00 2662 150 0.2355 0.2575 REMARK 3 6 3.6581 - 3.4424 1.00 2637 152 0.2554 0.2662 REMARK 3 7 3.4424 - 3.2700 1.00 2652 134 0.2854 0.3000 REMARK 3 8 3.2700 - 3.1277 1.00 2603 148 0.2933 0.3457 REMARK 3 9 3.1277 - 3.0072 1.00 2714 100 0.3044 0.3728 REMARK 3 10 3.0072 - 2.9035 1.00 2629 150 0.3234 0.4025 REMARK 3 11 2.9035 - 2.8127 1.00 2670 134 0.3512 0.3931 REMARK 3 12 2.8127 - 2.7323 1.00 2637 162 0.3693 0.3680 REMARK 3 13 2.7323 - 2.6604 1.00 2649 148 0.3859 0.4578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3830 REMARK 3 ANGLE : 1.307 5330 REMARK 3 CHIRALITY : 0.068 600 REMARK 3 PLANARITY : 0.007 592 REMARK 3 DIHEDRAL : 26.215 1425 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GRD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19265 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 68.812 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG10000, NACL, MAGNESIUM CHLORIDE, REMARK 280 CESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.33333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.33333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 83 REMARK 465 PRO A 84 REMARK 465 ILE A 85 REMARK 465 PHE A 86 REMARK 465 LYS A 87 REMARK 465 ARG A 88 REMARK 465 ASN A 89 REMARK 465 ARG A 90 REMARK 465 ARG A 91 REMARK 465 SER A 92 REMARK 465 GLY A 93 REMARK 465 THR A 94 REMARK 465 GLY A 95 REMARK 465 ASN A 96 REMARK 465 TYR A 342 REMARK 465 VAL A 343 REMARK 465 SER A 344 REMARK 465 GLY A 345 REMARK 465 PRO A 346 REMARK 465 ARG A 347 REMARK 465 ILE A 348 REMARK 465 ASP A 349 REMARK 465 ASP A 350 REMARK 465 PRO A 351 REMARK 465 ASP A 352 REMARK 465 LEU A 353 REMARK 465 LYS A 354 REMARK 465 GLN A 401 REMARK 465 VAL A 402 REMARK 465 GLU A 403 REMARK 465 ALA A 404 REMARK 465 PHE A 405 REMARK 465 GLY A 406 REMARK 465 ARG A 407 REMARK 465 SER A 408 REMARK 465 GLY A 409 REMARK 465 LEU A 410 REMARK 465 ALA A 411 REMARK 465 LEU A 412 REMARK 465 ASN A 413 REMARK 465 SER A 414 REMARK 465 ASP A 415 REMARK 465 ASP A 416 REMARK 465 GLU A 417 REMARK 465 PHE A 418 REMARK 465 ASP A 419 REMARK 465 GLU A 420 REMARK 465 ASP A 421 REMARK 465 ILE A 422 REMARK 465 SER A 423 REMARK 465 SER A 424 REMARK 465 SER A 425 REMARK 465 GLN A 426 REMARK 465 LYS A 427 REMARK 465 ALA A 428 REMARK 465 PRO A 429 REMARK 465 LYS A 430 REMARK 465 LYS A 466 REMARK 465 GLY A 467 REMARK 465 ARG A 468 REMARK 465 ALA A 469 REMARK 465 LYS A 470 REMARK 465 GLU A 471 REMARK 465 ASP A 472 REMARK 465 LYS A 473 REMARK 465 THR A 474 REMARK 465 ALA A 475 REMARK 465 ALA A 476 REMARK 465 LYS A 477 REMARK 465 ALA A 478 REMARK 465 LYS A 479 REMARK 465 ARG A 480 REMARK 465 LYS A 481 REMARK 465 THR A 482 REMARK 465 LYS A 483 REMARK 465 ILE A 484 REMARK 465 ILE A 485 REMARK 465 GLN A 486 REMARK 465 SER A 487 REMARK 465 ASN A 488 REMARK 465 MSE A 489 REMARK 465 PRO A 490 REMARK 465 ALA A 491 REMARK 465 GLY A 492 REMARK 465 ALA A 493 REMARK 465 LEU A 494 REMARK 465 ASP A 495 REMARK 465 LYS A 496 REMARK 465 TYR A 497 REMARK 465 VAL A 498 REMARK 465 THR A 499 REMARK 465 VAL A 500 REMARK 465 THR A 501 REMARK 465 LYS A 502 REMARK 465 ASN A 503 REMARK 465 ILE A 504 REMARK 465 SER A 505 REMARK 465 ASP A 506 REMARK 465 THR A 507 REMARK 465 THR A 508 REMARK 465 VAL A 509 REMARK 465 LYS A 510 REMARK 465 SER A 511 REMARK 465 LYS A 512 REMARK 465 GLU A 513 REMARK 465 SER A 514 REMARK 465 ALA A 515 REMARK 465 PRO A 516 REMARK 465 ILE A 517 REMARK 465 THR A 518 REMARK 465 ILE A 519 REMARK 465 PRO A 520 REMARK 465 SER A 521 REMARK 465 SER A 522 REMARK 465 PRO A 523 REMARK 465 PRO A 524 REMARK 465 LYS A 525 REMARK 465 PRO A 526 REMARK 465 SER A 527 REMARK 465 SER A 528 REMARK 465 GLN A 529 REMARK 465 PRO A 530 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 GLN A 47 CG CD OE1 NE2 REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 GLN A 241 CG CD OE1 NE2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 ARG A 275 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 355 CG CD CE NZ REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 LEU A 361 CG CD1 CD2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 DT H 16 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT H 16 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT H 16 C7 C6 REMARK 470 DT R 0 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT R 0 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT R 0 C7 C6 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MSE A 39 N CA C O REMARK 480 MSE A 102 N CA C O REMARK 480 MSE A 146 N CA C O REMARK 480 MSE A 189 N CA C O REMARK 480 MSE A 195 N CA C O REMARK 480 MSE A 271 N CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 15 OG SER A 157 2.13 REMARK 500 OG1 THR A 257 O3' DT H 27 2.19 REMARK 500 N2 DG H 22 O2 DC R 9 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT H 16 O3' DG H 17 P 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 143 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 LYS A 324 CD - CE - NZ ANGL. DEV. = -13.9 DEGREES REMARK 500 DG H 29 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 54 63.07 60.36 REMARK 500 ASP A 203 -72.42 -82.97 REMARK 500 THR A 257 -162.19 -125.50 REMARK 500 LEU A 262 96.75 -64.77 REMARK 500 HIS A 279 58.48 -140.51 REMARK 500 SER A 299 96.00 -61.85 REMARK 500 PHE A 318 -160.75 57.72 REMARK 500 ALA A 376 39.12 70.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 CS A 601 REMARK 615 MG A 602 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 122 OE2 REMARK 620 2 GLU A 140 OE1 97.8 REMARK 620 3 ASP A 143 OD1 78.4 138.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 601 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 196 O REMARK 620 2 ASP A 203 O 66.7 REMARK 620 3 ILE A 205 O 129.3 90.0 REMARK 620 4 CYS A 208 O 89.5 122.0 64.7 REMARK 620 5 DC R 9 OP1 141.8 132.3 87.4 99.5 REMARK 620 6 DC R 9 OP2 95.3 140.8 125.9 90.7 48.1 REMARK 620 N 1 2 3 4 5 DBREF 6GRD A 1 530 UNP G0RYN2 G0RYN2_CHATD 1 530 DBREF 6GRD H 16 30 PDB 6GRD 6GRD 16 30 DBREF 6GRD R 0 15 PDB 6GRD 6GRD 0 15 SEQRES 1 A 530 MSE GLY ILE LYS GLY ILE TYR LYS GLU ILE GLY SER GLY SEQRES 2 A 530 GLU ARG ILE SER LEU CYS LYS LEU ALA ILE ASP HIS LEU SEQRES 3 A 530 GLU GLN HIS ASN ARG PRO LEU ARG LEU ALA ILE ASP MSE SEQRES 4 A 530 ALA ILE TRP GLN PHE GLN ILE GLN ALA ALA ARG GLY GLY SEQRES 5 A 530 SER ASN PRO ALA ILE ARG THR LEU PHE TYR ARG PHE VAL SEQRES 6 A 530 ARG LEU LEU SER LEU GLY ILE HIS PRO ILE PHE VAL PHE SEQRES 7 A 530 ASP GLY PRO ASN LYS PRO ILE PHE LYS ARG ASN ARG ARG SEQRES 8 A 530 SER GLY THR GLY ASN GLY VAL SER THR ALA MSE ALA LYS SEQRES 9 A 530 ARG LEU ILE ARG LEU PHE GLY PHE THR ALA HIS ASP ALA SEQRES 10 A 530 PRO GLY GLU ALA GLU ALA GLU CYS ALA TYR LEU GLU GLN SEQRES 11 A 530 GLN GLY ILE VAL ASP ALA VAL LEU SER GLU ASP VAL ASP SEQRES 12 A 530 THR ILE MSE PHE GLY SER ARG VAL THR LEU ARG ASP TRP SEQRES 13 A 530 SER SER GLU GLY SER LYS GLY GLY PRO PRO THR HIS VAL SEQRES 14 A 530 THR LEU HIS ASP ALA LYS LYS ILE ALA GLU GLY PRO SER SEQRES 15 A 530 GLY LEU ASP ARG GLU GLY MSE VAL LEU VAL ALA LEU MSE SEQRES 16 A 530 SER GLY GLY ASP TYR LEU PRO ASP GLY ILE PRO GLY CYS SEQRES 17 A 530 GLY ILE LYS VAL ALA CYS GLN ALA ALA LYS ALA GLY PHE SEQRES 18 A 530 GLY LYS GLU LEU CYS ARG ILE LYS ARG ALA ASP LYS GLU SEQRES 19 A 530 ALA ILE THR GLU TRP LYS GLN ARG LEU LEU HIS GLU LEU SEQRES 20 A 530 ARG THR ASN GLU SER GLY PHE PHE ARG THR LYS HIS LYS SEQRES 21 A 530 ALA LEU GLU ILE PRO GLU ASN PHE PRO ASN MSE GLU VAL SEQRES 22 A 530 LEU ARG TYR TYR THR HIS PRO VAL VAL SER SER PRO ALA SEQRES 23 A 530 THR ILE GLU ARG LEU ARG GLN GLU PHE PRO PRO SER SER SEQRES 24 A 530 THR VAL ASP ILE ALA GLY LEU ARG GLU PHE THR ARG GLU SEQRES 25 A 530 THR PHE ASP TRP THR PHE ARG PRO GLY ALA ILE LYS LEU SEQRES 26 A 530 ILE LYS VAL LEU ALA PRO GLY LEU LEU VAL GLN ARG CYS SEQRES 27 A 530 LEU ASP ARG TYR VAL SER GLY PRO ARG ILE ASP ASP PRO SEQRES 28 A 530 ASP LEU LYS LYS LYS GLU GLU SER THR LEU VAL LYS GLY SEQRES 29 A 530 ILE SER MSE ARG ARG GLU HIS PHE SER THR ASP ALA THR SEQRES 30 A 530 PRO GLU LEU ARG VAL SER PHE ILE PRO ALA GLU LEU VAL SEQRES 31 A 530 GLY LEU ASP PRO GLY GLN GLU PRO GLU VAL GLN VAL GLU SEQRES 32 A 530 ALA PHE GLY ARG SER GLY LEU ALA LEU ASN SER ASP ASP SEQRES 33 A 530 GLU PHE ASP GLU ASP ILE SER SER SER GLN LYS ALA PRO SEQRES 34 A 530 LYS LYS PRO PHE ASP PRO TRP GLN PRO ASP LEU ALA TRP SEQRES 35 A 530 VAL PRO GLU THR ILE LEU LYS LEU GLY VAL PRO VAL THR SEQRES 36 A 530 VAL GLU ASP TRP GLU GLU GLY GLN ARG SER LYS GLY ARG SEQRES 37 A 530 ALA LYS GLU ASP LYS THR ALA ALA LYS ALA LYS ARG LYS SEQRES 38 A 530 THR LYS ILE ILE GLN SER ASN MSE PRO ALA GLY ALA LEU SEQRES 39 A 530 ASP LYS TYR VAL THR VAL THR LYS ASN ILE SER ASP THR SEQRES 40 A 530 THR VAL LYS SER LYS GLU SER ALA PRO ILE THR ILE PRO SEQRES 41 A 530 SER SER PRO PRO LYS PRO SER SER GLN PRO SEQRES 1 H 15 DT DG DA DG DC DG DG DT DG DG DT DT DG SEQRES 2 H 15 DG DT SEQRES 1 R 16 DT DA DC DC DC DA DC DC DA DC DC DG DC SEQRES 2 R 16 DT DC DA MODRES 6GRD MSE A 39 MET MODIFIED RESIDUE MODRES 6GRD MSE A 102 MET MODIFIED RESIDUE MODRES 6GRD MSE A 146 MET MODIFIED RESIDUE MODRES 6GRD MSE A 189 MET MODIFIED RESIDUE MODRES 6GRD MSE A 195 MET MODIFIED RESIDUE MODRES 6GRD MSE A 271 MET MODIFIED RESIDUE MODRES 6GRD MSE A 367 MET MODIFIED RESIDUE HET MSE A 39 8 HET MSE A 102 8 HET MSE A 146 8 HET MSE A 189 8 HET MSE A 195 8 HET MSE A 271 8 HET MSE A 367 8 HET CS A 601 1 HET MG A 602 1 HETNAM MSE SELENOMETHIONINE HETNAM CS CESIUM ION HETNAM MG MAGNESIUM ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 4 CS CS 1+ FORMUL 5 MG MG 2+ HELIX 1 AA1 ILE A 6 GLY A 11 1 6 HELIX 2 AA2 LEU A 18 ASN A 30 1 13 HELIX 3 AA3 ALA A 40 TRP A 42 5 3 HELIX 4 AA4 ASN A 54 LEU A 70 1 17 HELIX 5 AA5 SER A 99 PHE A 110 1 12 HELIX 6 AA6 GLU A 120 GLN A 130 1 11 HELIX 7 AA7 VAL A 142 PHE A 147 1 6 HELIX 8 AA8 ALA A 174 GLY A 180 1 7 HELIX 9 AA9 ASP A 185 GLY A 197 1 13 HELIX 10 AB1 GLY A 209 ALA A 219 1 11 HELIX 11 AB2 GLY A 220 ARG A 227 1 8 HELIX 12 AB3 LYS A 233 ASN A 250 1 18 HELIX 13 AB4 ASN A 270 HIS A 279 1 10 HELIX 14 AB5 SER A 284 PHE A 295 1 12 HELIX 15 AB6 ASP A 302 PHE A 314 1 13 HELIX 16 AB7 THR A 317 ARG A 341 1 25 HELIX 17 AB8 LYS A 356 LEU A 361 5 6 HELIX 18 AB9 HIS A 371 ASP A 375 5 5 HELIX 19 AC1 ILE A 385 GLY A 391 1 7 HELIX 20 AC2 ASP A 393 GLU A 397 5 5 HELIX 21 AC3 GLU A 445 VAL A 452 1 8 HELIX 22 AC4 VAL A 452 SER A 465 1 14 SHEET 1 AA1 7 GLU A 14 SER A 17 0 SHEET 2 AA1 7 HIS A 168 ASP A 173 -1 O VAL A 169 N ILE A 16 SHEET 3 AA1 7 VAL A 151 SER A 157 -1 N ARG A 154 O THR A 170 SHEET 4 AA1 7 ALA A 136 SER A 139 1 N VAL A 137 O LEU A 153 SHEET 5 AA1 7 ARG A 34 ASP A 38 1 N ALA A 36 O LEU A 138 SHEET 6 AA1 7 HIS A 73 PHE A 78 1 O ILE A 75 N ILE A 37 SHEET 7 AA1 7 THR A 113 ASP A 116 1 O HIS A 115 N PHE A 76 SHEET 1 AA2 3 GLY A 364 ARG A 369 0 SHEET 2 AA2 3 GLU A 379 PHE A 384 -1 O SER A 383 N GLY A 364 SHEET 3 AA2 3 ASP A 439 PRO A 444 -1 O ASP A 439 N PHE A 384 LINK C ASP A 38 N MSE A 39 1555 1555 1.31 LINK C MSE A 39 N ALA A 40 1555 1555 1.32 LINK C ALA A 101 N MSE A 102 1555 1555 1.32 LINK C MSE A 102 N ALA A 103 1555 1555 1.33 LINK OE2 GLU A 122 MG MG A 602 1555 1555 2.70 LINK OE1 GLU A 140 MG MG A 602 1555 1555 2.65 LINK OD1 ASP A 143 MG MG A 602 1555 1555 2.22 LINK C ILE A 145 N MSE A 146 1555 1555 1.32 LINK C MSE A 146 N PHE A 147 1555 1555 1.32 LINK C GLY A 188 N MSE A 189 1555 1555 1.32 LINK C MSE A 189 N VAL A 190 1555 1555 1.32 LINK C LEU A 194 N MSE A 195 1555 1555 1.32 LINK C MSE A 195 N SER A 196 1555 1555 1.32 LINK O SER A 196 CS CS A 601 1555 1555 3.38 LINK O ASP A 203 CS CS A 601 1555 1555 2.98 LINK O ILE A 205 CS CS A 601 1555 1555 3.44 LINK O CYS A 208 CS CS A 601 1555 1555 3.06 LINK C ASN A 270 N MSE A 271 1555 1555 1.33 LINK C MSE A 271 N GLU A 272 1555 1555 1.32 LINK C SER A 366 N MSE A 367 1555 1555 1.34 LINK C MSE A 367 N ARG A 368 1555 1555 1.34 LINK OP1 DC R 9 CS CS A 601 1555 1555 3.21 LINK OP2 DC R 9 CS CS A 601 1555 1555 3.22 CISPEP 1 GLY A 2 ILE A 3 0 -3.81 CISPEP 2 PHE A 268 PRO A 269 0 -5.32 CISPEP 3 PHE A 295 PRO A 296 0 3.43 CRYST1 97.390 97.390 119.000 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010268 0.005928 0.000000 0.00000 SCALE2 0.000000 0.011856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008403 0.00000