HEADER METAL BINDING PROTEIN 19-JUN-18 6GU5 TITLE MOSTO CONTAINING THE CORE POM CLUSTERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDENUM STORAGE PROTEIN SUBUNIT BETA; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: MOSTO SUBUNIT BETA; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MOLYBDENUM STORAGE PROTEIN SUBUNIT ALPHA; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: MO STORAGE PROTEIN SUBUNIT ALPHA,MOSTO SUBUNIT ALPHA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII DJ; SOURCE 3 ORGANISM_TAXID: 322710; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII DJ; SOURCE 6 ORGANISM_TAXID: 322710 KEYWDS MOLYBDENUM STORAGE, POLYOXOMETALATE CLUSTERS, ATP BINDING, METAL KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.ERMLER,J.POPPE,S.BRUENLE REVDAT 3 17-JAN-24 6GU5 1 REMARK REVDAT 2 26-DEC-18 6GU5 1 JRNL REVDAT 1 07-NOV-18 6GU5 0 JRNL AUTH J.POPPE,S.BRUNLE,R.HAIL,K.WIESEMANN,K.SCHNEIDER,U.ERMLER JRNL TITL THE MOLYBDENUM STORAGE PROTEIN: A SOLUBLE ATP JRNL TITL 2 HYDROLYSIS-DEPENDENT MOLYBDATE PUMP. JRNL REF FEBS J. V. 285 4602 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30367742 JRNL DOI 10.1111/FEBS.14684 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 72066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0875 - 5.6240 0.98 2922 143 0.2038 0.1994 REMARK 3 2 5.6240 - 4.4657 0.99 2760 143 0.1605 0.1686 REMARK 3 3 4.4657 - 3.9017 0.99 2713 143 0.1351 0.1522 REMARK 3 4 3.9017 - 3.5452 0.99 2674 169 0.1448 0.1587 REMARK 3 5 3.5452 - 3.2912 0.99 2646 149 0.1499 0.1745 REMARK 3 6 3.2912 - 3.0972 0.98 2663 124 0.1573 0.1783 REMARK 3 7 3.0972 - 2.9422 0.99 2651 131 0.1569 0.1729 REMARK 3 8 2.9422 - 2.8141 0.99 2642 137 0.1629 0.2074 REMARK 3 9 2.8141 - 2.7058 0.99 2648 118 0.1630 0.1802 REMARK 3 10 2.7058 - 2.6125 0.99 2571 162 0.1578 0.1779 REMARK 3 11 2.6125 - 2.5308 0.99 2626 150 0.1566 0.2036 REMARK 3 12 2.5308 - 2.4584 0.99 2616 134 0.1642 0.1682 REMARK 3 13 2.4584 - 2.3937 0.99 2601 141 0.1641 0.2006 REMARK 3 14 2.3937 - 2.3353 0.99 2598 144 0.1591 0.2033 REMARK 3 15 2.3353 - 2.2823 0.98 2579 133 0.1745 0.2062 REMARK 3 16 2.2823 - 2.2337 0.98 2557 147 0.1769 0.1890 REMARK 3 17 2.2337 - 2.1890 0.99 2611 127 0.1773 0.2315 REMARK 3 18 2.1890 - 2.1477 0.99 2578 150 0.1866 0.2363 REMARK 3 19 2.1477 - 2.1093 0.99 2606 131 0.1989 0.2243 REMARK 3 20 2.1093 - 2.0736 0.99 2592 135 0.2107 0.2289 REMARK 3 21 2.0736 - 2.0401 0.99 2618 132 0.2145 0.2518 REMARK 3 22 2.0401 - 2.0088 0.99 2575 164 0.2211 0.2748 REMARK 3 23 2.0088 - 1.9792 0.99 2587 135 0.2391 0.2366 REMARK 3 24 1.9792 - 1.9513 0.99 2588 122 0.2405 0.2496 REMARK 3 25 1.9513 - 1.9250 0.99 2616 136 0.2559 0.3159 REMARK 3 26 1.9250 - 1.9000 0.99 2599 129 0.2770 0.2953 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 4116 REMARK 3 ANGLE : 1.688 5790 REMARK 3 CHIRALITY : 0.101 639 REMARK 3 PLANARITY : 0.009 714 REMARK 3 DIHEDRAL : 14.858 2468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 41.3635 19.0449 28.4616 REMARK 3 T TENSOR REMARK 3 T11: 0.1454 T22: 0.1349 REMARK 3 T33: 0.1673 T12: -0.0379 REMARK 3 T13: -0.0174 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.5086 L22: 0.6014 REMARK 3 L33: 1.5912 L12: -0.3292 REMARK 3 L13: -0.4114 L23: 0.5522 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.0720 S13: -0.1083 REMARK 3 S21: -0.0603 S22: -0.0362 S23: 0.1173 REMARK 3 S31: 0.1436 S32: -0.2129 S33: 0.0452 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72069 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4F6T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 1.1 M AMMONIUM REMARK 280 CITRATE, 10% GLYCEROL, PH 4.6, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.25000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.25000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.25000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 117.25000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 117.25000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 117.25000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 115.15000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 57.57500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 99.72283 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 57.57500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 99.72283 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 117.25000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 115.15000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 117.25000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 117.25000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -212.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 115.15000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 57.57500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 99.72283 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 2 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ILE A 8 REMARK 465 LYS A 9 REMARK 465 HIS A 10 REMARK 465 VAL A 11 REMARK 465 ILE A 12 REMARK 465 SER A 13 REMARK 465 PRO A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 GLN A 18 REMARK 465 THR A 19 REMARK 465 LEU A 20 REMARK 465 GLN A 21 REMARK 465 ASP A 22 REMARK 465 ARG A 23 REMARK 465 ASP A 24 REMARK 465 LEU A 25 REMARK 465 THR A 26 REMARK 465 ARG A 27 REMARK 465 PRO A 28 REMARK 465 VAL A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 156 MO5 8M0 A 304 2.16 REMARK 500 O4 PO4 A 302 O HOH A 401 2.19 REMARK 500 O LEU B 131 N VAL B 134 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 MO MOO A 305 O4 MOO A 305 3665 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 157 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 48 -64.57 -132.13 REMARK 500 ALA B 78 -75.65 -113.14 REMARK 500 LEU B 131 -82.71 -8.28 REMARK 500 LYS B 153 -129.69 54.81 REMARK 500 ARG B 168 -140.55 -113.04 REMARK 500 LYS B 189 -156.46 -121.82 REMARK 500 ASP B 223 79.53 -117.41 REMARK 500 SER B 224 -99.27 -126.80 REMARK 500 HIS A 156 -134.06 61.33 REMARK 500 ARG A 169 -146.90 -106.63 REMARK 500 HIS A 241 -49.24 -134.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 126 GLY B 127 -127.46 REMARK 500 LEU B 131 SER B 132 -146.83 REMARK 500 GLY A 272 VAL A 273 148.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 593 DISTANCE = 5.85 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 8M0 A 304 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8M0 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8M0 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MOO A 305 DBREF 6GU5 B 2 270 UNP P84253 MOSB_AZOVD 2 270 DBREF 6GU5 A 2 276 UNP P84308 MOSA_AZOVD 2 276 SEQRES 1 B 269 ALA ASN SER THR ALA GLU LEU GLU GLU LEU LEU MET GLN SEQRES 2 B 269 ARG SER LEU THR ASP PRO GLN LEU GLN ALA ALA ALA ALA SEQRES 3 B 269 ALA ALA ALA ASP PHE ARG ILE LEU PRO ASP ALA THR VAL SEQRES 4 B 269 ILE LYS ILE GLY GLY GLN SER VAL ILE ASP ARG GLY ARG SEQRES 5 B 269 ALA ALA VAL TYR PRO LEU VAL ASP GLU ILE VAL ALA ALA SEQRES 6 B 269 ARG LYS ASN HIS LYS LEU LEU ILE GLY THR GLY ALA GLY SEQRES 7 B 269 THR ARG ALA ARG HIS LEU TYR SER ILE ALA ALA GLY LEU SEQRES 8 B 269 GLY LEU PRO ALA GLY VAL LEU ALA GLN LEU GLY SER SER SEQRES 9 B 269 VAL ALA ASP GLN ASN ALA ALA MET LEU GLY GLN LEU LEU SEQRES 10 B 269 ALA LYS HIS GLY ILE PRO VAL VAL GLY GLY ALA GLY LEU SEQRES 11 B 269 SER ALA VAL PRO LEU SER LEU ALA GLU VAL ASN ALA VAL SEQRES 12 B 269 VAL PHE SER GLY MET PRO PRO TYR LYS LEU TRP MET ARG SEQRES 13 B 269 PRO ALA ALA GLU GLY VAL ILE PRO PRO TYR ARG THR ASP SEQRES 14 B 269 ALA GLY CYS PHE LEU LEU ALA GLU GLN PHE GLY CYS LYS SEQRES 15 B 269 GLN MET ILE PHE VAL LYS ASP GLU ASP GLY LEU TYR THR SEQRES 16 B 269 ALA ASN PRO LYS THR SER LYS ASP ALA THR PHE ILE PRO SEQRES 17 B 269 ARG ILE SER VAL ASP GLU MET LYS ALA LYS GLY LEU HIS SEQRES 18 B 269 ASP SER ILE LEU GLU PHE PRO VAL LEU ASP LEU LEU GLN SEQRES 19 B 269 SER ALA GLN HIS VAL ARG GLU VAL GLN VAL VAL ASN GLY SEQRES 20 B 269 LEU VAL PRO GLY ASN LEU THR ARG ALA LEU ALA GLY GLU SEQRES 21 B 269 HIS VAL GLY THR ILE ILE THR ALA SER SEQRES 1 A 275 THR ASP THR THR ASN SER ILE LYS HIS VAL ILE SER PRO SEQRES 2 A 275 LEU ALA ARG GLN THR LEU GLN ASP ARG ASP LEU THR ARG SEQRES 3 A 275 PRO VAL ALA GLY LYS ARG PRO ILE ARG LEU LEU PRO TRP SEQRES 4 A 275 LEU GLN VAL VAL LYS ILE GLY GLY ARG VAL MET ASP ARG SEQRES 5 A 275 GLY ALA ASP ALA ILE LEU PRO LEU VAL GLU GLU LEU ARG SEQRES 6 A 275 LYS LEU LEU PRO GLU HIS ARG LEU LEU ILE LEU THR GLY SEQRES 7 A 275 ALA GLY VAL ARG ALA ARG HIS VAL PHE SER VAL GLY LEU SEQRES 8 A 275 ASP LEU GLY LEU PRO VAL GLY SER LEU ALA PRO LEU ALA SEQRES 9 A 275 ALA SER GLU ALA GLY GLN ASN GLY HIS ILE LEU ALA ALA SEQRES 10 A 275 MET LEU ALA SER GLU GLY VAL SER TYR VAL GLU HIS PRO SEQRES 11 A 275 THR VAL ALA ASP GLN LEU ALA ILE HIS LEU SER ALA THR SEQRES 12 A 275 ARG ALA VAL VAL GLY SER ALA PHE PRO PRO TYR HIS HIS SEQRES 13 A 275 HIS GLU PHE PRO GLY SER ARG ILE PRO PRO HIS ARG ALA SEQRES 14 A 275 ASP THR GLY ALA PHE LEU LEU ALA ASP ALA PHE GLY ALA SEQRES 15 A 275 ALA GLY LEU THR ILE VAL GLU ASN VAL ASP GLY ILE TYR SEQRES 16 A 275 THR ALA ASP PRO ASN GLY PRO ASP ARG GLY GLN ALA ARG SEQRES 17 A 275 PHE LEU PRO GLU THR SER ALA THR ASP LEU ALA LYS SER SEQRES 18 A 275 GLU GLY PRO LEU PRO VAL ASP ARG ALA LEU LEU ASP VAL SEQRES 19 A 275 MET ALA THR ALA ARG HIS ILE GLU ARG VAL GLN VAL VAL SEQRES 20 A 275 ASN GLY LEU VAL PRO GLY ARG LEU THR ALA ALA LEU ARG SEQRES 21 A 275 GLY GLU HIS VAL GLY THR LEU ILE ARG THR GLY VAL ARG SEQRES 22 A 275 PRO ALA HET ATP B 301 31 HET 8M0 A 301 36 HET PO4 A 302 5 HET ATP A 303 31 HET 8M0 A 304 34 HET MOO A 305 5 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM 8M0 BIS(MU4-OXO)-TETRAKIS(MU3-OXO)-HEXAKIS(MU2-OXO)- HETNAM 2 8M0 HEXADECAOXO-OCTAMOLYBDENUM (VI) HETNAM PO4 PHOSPHATE ION HETNAM MOO MOLYBDATE ION HETSYN 8M0 OCTAMOLYBDATE [MO(VI)8O28]8- HETSYN MOO MOLYBDATE FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 8M0 2(MO8 O28 8-) FORMUL 5 PO4 O4 P 3- FORMUL 8 MOO MO O4 2- FORMUL 9 HOH *376(H2 O) HELIX 1 AA1 SER B 4 ARG B 15 1 12 HELIX 2 AA2 ASP B 19 ALA B 28 1 10 HELIX 3 AA3 VAL B 48 ARG B 51 5 4 HELIX 4 AA4 GLY B 52 ARG B 67 1 16 HELIX 5 AA5 GLY B 79 LEU B 92 1 14 HELIX 6 AA6 PRO B 95 ALA B 119 1 25 HELIX 7 AA7 LYS B 120 GLY B 122 5 3 HELIX 8 AA8 ALA B 129 LEU B 131 5 3 HELIX 9 AA9 SER B 132 ASN B 142 1 11 HELIX 10 AB1 TYR B 152 MET B 156 5 5 HELIX 11 AB2 ARG B 168 GLY B 181 1 14 HELIX 12 AB3 VAL B 213 LYS B 219 1 7 HELIX 13 AB4 GLU B 227 ALA B 237 1 11 HELIX 14 AB5 GLY B 252 ALA B 259 1 8 HELIX 15 AB6 GLY A 47 ASP A 52 1 6 HELIX 16 AB7 GLY A 54 LEU A 69 1 16 HELIX 17 AB8 GLY A 81 LEU A 94 1 14 HELIX 18 AB9 PRO A 97 ALA A 121 1 25 HELIX 19 AC1 SER A 122 GLY A 124 5 3 HELIX 20 AC2 GLU A 129 THR A 144 1 16 HELIX 21 AC3 TYR A 155 GLU A 159 5 5 HELIX 22 AC4 ARG A 169 GLY A 182 1 14 HELIX 23 AC5 ASP A 204 ALA A 208 5 5 HELIX 24 AC6 ALA A 216 SER A 222 1 7 HELIX 25 AC7 ASP A 229 THR A 238 1 10 HELIX 26 AC8 GLY A 254 ARG A 261 1 8 SHEET 1 AA1 7 ALA B 143 SER B 147 0 SHEET 2 AA1 7 LYS B 71 THR B 76 1 N ILE B 74 O VAL B 144 SHEET 3 AA1 7 ALA B 38 ILE B 43 1 N ILE B 43 O GLY B 75 SHEET 4 AA1 7 GLN B 184 LYS B 189 1 O VAL B 188 N LYS B 42 SHEET 5 AA1 7 GLU B 242 ASN B 247 1 O GLN B 244 N PHE B 187 SHEET 6 AA1 7 THR B 265 THR B 268 -1 O THR B 265 N VAL B 245 SHEET 7 AA1 7 ARG B 210 SER B 212 1 N ILE B 211 O THR B 268 SHEET 1 AA2 2 LEU B 194 TYR B 195 0 SHEET 2 AA2 2 PHE B 207 ILE B 208 -1 O ILE B 208 N LEU B 194 SHEET 1 AA3 7 ALA A 146 SER A 150 0 SHEET 2 AA3 7 ARG A 73 THR A 78 1 N ILE A 76 O VAL A 147 SHEET 3 AA3 7 LEU A 41 ILE A 46 1 N VAL A 44 O LEU A 77 SHEET 4 AA3 7 GLY A 185 GLU A 190 1 O VAL A 189 N LYS A 45 SHEET 5 AA3 7 ARG A 244 ASN A 249 1 O VAL A 248 N GLU A 190 SHEET 6 AA3 7 THR A 267 ARG A 270 -1 O THR A 267 N VAL A 247 SHEET 7 AA3 7 GLU A 213 SER A 215 1 N THR A 214 O LEU A 268 SHEET 1 AA4 2 ILE A 195 TYR A 196 0 SHEET 2 AA4 2 PHE A 210 LEU A 211 -1 O LEU A 211 N ILE A 195 LINK N HIS A 130 O12 8M0 A 304 1555 1555 1.38 SITE 1 AC1 25 LYS B 42 GLY B 44 GLY B 45 GLN B 46 SITE 2 AC1 25 SER B 47 GLY B 77 ALA B 78 GLY B 79 SITE 3 AC1 25 THR B 169 LYS B 189 ASP B 190 GLY B 193 SITE 4 AC1 25 TYR B 195 ALA B 197 ASN B 198 PRO B 199 SITE 5 AC1 25 LYS B 200 SER B 224 ILE B 225 HOH B 401 SITE 6 AC1 25 HOH B 404 HOH B 473 HOH B 506 HOH B 508 SITE 7 AC1 25 HOH B 509 SITE 1 AC2 18 TYR A 155 HIS A 156 HIS A 157 HIS A 158 SITE 2 AC2 18 8M0 A 304 HOH A 499 HOH A 519 GLY B 127 SITE 3 AC2 18 GLY B 130 LEU B 131 PHE B 146 SER B 147 SITE 4 AC2 18 MET B 149 PRO B 151 LEU B 176 PHE B 180 SITE 5 AC2 18 HOH B 436 HOH B 475 SITE 1 AC3 5 PHE A 160 HOH A 401 HOH A 515 HOH A 545 SITE 2 AC3 5 ARG B 157 SITE 1 AC4 29 LYS A 45 GLY A 47 GLY A 48 ARG A 49 SITE 2 AC4 29 GLY A 79 ALA A 80 GLY A 81 ARG A 85 SITE 3 AC4 29 GLU A 190 ASN A 191 GLY A 194 TYR A 196 SITE 4 AC4 29 ALA A 198 ASP A 199 PRO A 200 ASN A 201 SITE 5 AC4 29 PRO A 225 LEU A 226 PRO A 227 HOH A 403 SITE 6 AC4 29 HOH A 414 HOH A 415 HOH A 429 HOH A 459 SITE 7 AC4 29 HOH A 497 HOH A 501 HOH A 507 HOH A 536 SITE 8 AC4 29 HOH B 433 SITE 1 AC5 17 ALA A 106 SER A 107 GLY A 110 GLN A 111 SITE 2 AC5 17 HIS A 114 TYR A 127 GLU A 129 HIS A 130 SITE 3 AC5 17 PRO A 131 SER A 150 PRO A 153 PRO A 154 SITE 4 AC5 17 HIS A 156 8M0 A 301 HOH A 405 HOH A 449 SITE 5 AC5 17 HOH A 492 SITE 1 AC6 5 GLN A 136 ILE A 139 HIS A 140 HOH A 402 SITE 2 AC6 5 HOH A 406 CRYST1 115.150 115.150 234.500 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008684 0.005014 0.000000 0.00000 SCALE2 0.000000 0.010028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004264 0.00000