HEADER DNA BINDING PROTEIN 21-JUN-18 6GVT TITLE HYBRID STRUCTURE OF THE PRN1 HELIX BUNDLE DOMAIN IN COMPLEX WITH DNA TITLE 2 AND 2 ATP MOLECULES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FUNCTIONAL PRN1 PRIMASE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE FIRST STAGE OF THE HYBRID STRUCTURE DETERMINATION COMPND 10 INCLUDES STRUCTURAL DATA FROM THE HELIX BUNDLE DOMAIN QUATERNARY COMPND 11 STRUCTURE SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SULFOLOBUS ISLANDICUS; SOURCE 4 ORGANISM_TAXID: 43080; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SULFOLOBUS ISLANDICUS; SOURCE 7 ORGANISM_TAXID: 43080; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PRN1 PRIMASE, DINUCLEOTIDE FORMATION, QUATERNARY STRUCTURE OF THE KEYWDS 2 HELIX BUNDLE DOMAIN, SYNERGISTIC EFFECT, DNA BINDING PROTEIN EXPDTA SOLUTION NMR; SOLID-STATE NMR NUMMDL 20 AUTHOR J.BOUDET,T.WIEGAND,B.H.MEIER,G.LIPPS,F.H.-T.ALLAIN REVDAT 4 21-AUG-19 6GVT 1 REMARK REVDAT 3 23-JAN-19 6GVT 1 JRNL REVDAT 2 09-JAN-19 6GVT 1 JRNL REVDAT 1 26-DEC-18 6GVT 0 JRNL AUTH J.BOUDET,J.C.DEVILLIER,T.WIEGAND,L.SALMON,B.H.MEIER,G.LIPPS, JRNL AUTH 2 F.H.ALLAIN JRNL TITL A SMALL HELICAL BUNDLE PREPARES PRIMER SYNTHESIS BY BINDING JRNL TITL 2 TWO NUCLEOTIDES THAT ENHANCE SEQUENCE-SPECIFIC RECOGNITION JRNL TITL 3 OF THE DNA TEMPLATE. JRNL REF CELL V. 176 154 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 30595448 JRNL DOI 10.1016/J.CELL.2018.11.031 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010628. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 278; 278 REMARK 210 PH : 7.0; 5.0; 5.0; 7.0 REMARK 210 IONIC STRENGTH : 50 MM NACL 10MM MGCL2; 100 MM REMARK 210 NACL 10MM MGCL2; 100 MM NACL REMARK 210 10MM MGCL2; 50 MM NACL 10MM MGCL2 REMARK 210 PRESSURE : AMBIENT ATM; AMBIENT ATM; REMARK 210 AMBIENT ATM; AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 PRN1 HELIX BUNDLE DOMAIN IN COMPLEX WITH DNA AND ATP, 1.0 MM DNA REMARK 210 (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 MM ADENOSINE-5'- REMARK 210 TRIPHOSPHATE, 10 MM MAGNESIUM, 90% H2O/10% D2O; 0.7 MM [U-100% REMARK 210 13C] PRN1 HELIX BUNDLE DOMAIN IN COMPLEX WITH DNA AND ATP, 0.7 REMARK 210 MM DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 MM ADENOSINE-5' REMARK 210 -TRIPHOSPHATE, 10.0 MM MAGNESIUM, 100% D2O; 1.0 MM [U-99% 15N] REMARK 210 PRN1 HELIX BUNDLE DOMAIN IN COMPLEX WITH DNA AND ATP, 1.0 MM DNA REMARK 210 (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 MM ADENOSINE-5'- REMARK 210 TRIPHOSPHATE, 10.0 MM MAGNESIUM, 90% H2O/10% D2O; 1.0 MM PRN1 REMARK 210 THE HELIX BUNDLE DOMAIN IN COMPLEX WITH DNA AND ATP, 1.0 MM DNA REMARK 210 (5'-D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 MM ADENOSINE-5'- REMARK 210 TRIPHOSPHATE, 10.0 MM MAGNESIUM, 90% H2O/10% D2O; 1.0 MM PRN1 REMARK 210 HELIX BUNDLE DOMAIN IN COMPLEX WITH DNA AND ATP, 1.0 MM DNA (5'- REMARK 210 D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 MM ADENOSINE-5'- REMARK 210 TRIPHOSPHATE, 10.0 MM MAGNESIUM, 90% H2O/10% D2O; 4.0 MM [U-99% REMARK 210 13C; U-99% 15N] FUNCTIONAL-PRN1-PRIMASE, 4.0 MM DNA (5'-D(*CP*TP* REMARK 210 GP*TP*GP*CP*TP*CP*A)-3'), 10.0 MM ADENOSINE-5'-TRIPHOSPHATE, REMARK 210 10.0 MM MAGNESIUM, 90% H2O/10% D2O; 1.0 MM [U-100% 13C] PRN1 REMARK 210 HELIX BUNDLE DOMAIN IN COMPLEX WITH DNA AND ATP, 1.0 MM DNA (5'- REMARK 210 D(*CP*TP*GP*TP*GP*CP*TP*CP*A)-3'), 4.0 MM ADENOSINE-5'- REMARK 210 TRIPHOSPHATE, 10 MM MAGNESIUM, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D C(CO)NH; 3D H(CCO)NH; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H-13C NOESY AROMATIC; 2D 1H-1H REMARK 210 NOESY; 2D 1H-1H TOCSY; 2D 1H-13C HSQC AROMATIC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D-F1FF2F-NOESY; 2D-F2F-NOESY; 3D-13C-ALIPHATIC- REMARK 210 HFILTEREDHEDITED-NOESY; 3D-13C-AROMATIC-HFILTEREDHEDITED-NOESY; REMARK 210 2D-IMINO-NOESY; 2D-NATURAL-ABUNDANCE-CHSQC; DARR; NCX(R); NCX(W); REMARK 210 CHHP; NHHP; 31P CPMAS; 31P-31P-DARR; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ; 600 MHZ; 850 REMARK 210 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY, MARS, CANDID, REMARK 210 TOPSPIN, CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC A 1 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 1 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DG A 3 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DG A 5 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DC A 6 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DT A 7 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 2 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 2 DG A 3 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 2 DG A 5 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 2 DC A 6 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DT A 7 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 2 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 2 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 3 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 3 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 3 DG A 3 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 3 DG A 5 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 3 DC A 6 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 3 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 3 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 4 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 4 DG A 3 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 DT A 4 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 4 DC A 6 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 4 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 4 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 5 DC A 1 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 5 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 5 DG A 3 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 5 DG A 5 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 5 DC A 6 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 5 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 5 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 6 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 6 DG A 3 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 6 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 6 DG A 5 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 6 DC A 6 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 6 DT A 7 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 6 DC A 8 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 6 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 7 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 7 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 7 DG A 3 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 152 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU B 298 17.35 58.51 REMARK 500 1 THR B 301 -149.62 -149.17 REMARK 500 1 THR B 326 -23.32 -142.09 REMARK 500 1 GLU B 343 -42.00 -140.04 REMARK 500 2 THR B 301 -37.65 -148.55 REMARK 500 2 TYR B 302 -25.08 -162.94 REMARK 500 2 GLU B 343 -38.61 -139.27 REMARK 500 3 GLU B 298 13.40 59.05 REMARK 500 3 THR B 301 -36.87 -151.03 REMARK 500 3 TYR B 302 -22.75 -163.39 REMARK 500 3 THR B 326 -141.70 -143.72 REMARK 500 3 ASP B 327 117.55 64.08 REMARK 500 3 GLU B 343 -34.99 -147.70 REMARK 500 3 ASN B 344 78.97 49.21 REMARK 500 4 GLU B 298 19.13 57.74 REMARK 500 4 THR B 301 -38.69 -149.39 REMARK 500 4 TYR B 302 -25.66 -159.81 REMARK 500 4 THR B 326 -24.88 -140.39 REMARK 500 4 GLU B 343 -47.37 -141.47 REMARK 500 4 ASN B 344 59.79 39.74 REMARK 500 4 LYS B 346 37.57 -145.51 REMARK 500 4 TRP B 347 -23.45 -144.31 REMARK 500 4 ASN B 348 135.95 62.60 REMARK 500 5 CYS B 297 1.99 -69.86 REMARK 500 5 THR B 301 -37.63 -147.51 REMARK 500 5 TYR B 302 -26.97 -161.93 REMARK 500 5 THR B 326 -23.25 -140.29 REMARK 500 5 GLU B 343 -47.24 -143.21 REMARK 500 6 GLU B 298 17.83 58.14 REMARK 500 6 THR B 301 -37.37 -149.91 REMARK 500 6 TYR B 302 -27.39 -160.18 REMARK 500 6 THR B 326 -144.69 -144.65 REMARK 500 6 ASP B 327 120.66 64.46 REMARK 500 6 GLU B 343 -37.97 -139.73 REMARK 500 7 GLU B 298 16.45 59.97 REMARK 500 7 THR B 301 -37.53 -149.49 REMARK 500 7 TYR B 302 -25.32 -166.59 REMARK 500 7 THR B 326 -141.31 -134.21 REMARK 500 7 ASP B 327 125.60 63.79 REMARK 500 7 GLU B 343 -49.24 -135.55 REMARK 500 7 ASN B 344 77.47 49.71 REMARK 500 7 LYS B 346 -30.45 -134.69 REMARK 500 8 CYS B 297 1.86 -69.87 REMARK 500 8 GLU B 298 19.01 58.31 REMARK 500 8 THR B 301 -36.01 -152.14 REMARK 500 8 TYR B 302 -26.63 -160.01 REMARK 500 8 THR B 326 -23.68 -140.02 REMARK 500 8 GLU B 343 -45.63 -142.50 REMARK 500 8 ASN B 344 79.53 41.24 REMARK 500 9 THR B 301 -152.80 -150.39 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 308 OD2 REMARK 620 2 ATP B 401 O2G 104.7 REMARK 620 3 ATP B 401 O2B 104.2 97.3 REMARK 620 4 ATP B 401 O1A 141.1 104.7 96.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 343 OE2 REMARK 620 2 ATP B 402 O1G 95.1 REMARK 620 3 ATP B 402 O1B 138.6 97.6 REMARK 620 4 ATP B 402 O1A 124.1 101.1 91.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34290 RELATED DB: BMRB DBREF 6GVT A 1 9 PDB 6GVT 6GVT 1 9 DBREF 6GVT B 256 370 UNP Q54324 Q54324_SULIS 256 370 SEQRES 1 A 9 DC DT DG DT DG DC DT DC DA SEQRES 1 B 115 THR VAL VAL GLU PHE GLU GLU LEU ARG LYS GLU LEU VAL SEQRES 2 B 115 LYS ARG ASP SER GLY LYS PRO VAL GLU LYS ILE LYS GLU SEQRES 3 B 115 GLU ILE CYS THR LYS SER PRO PRO LYS LEU ILE LYS GLU SEQRES 4 B 115 ILE ILE CYS GLU ASN LYS THR TYR ALA ASP VAL ASN ILE SEQRES 5 B 115 ASP ARG SER ARG GLY ASP TRP HIS VAL ILE LEU TYR LEU SEQRES 6 B 115 MET LYS HIS GLY VAL THR ASP PRO ASP LYS ILE LEU GLU SEQRES 7 B 115 LEU LEU PRO ARG ASP SER LYS ALA LYS GLU ASN GLU LYS SEQRES 8 B 115 TRP ASN THR GLN LYS TYR PHE VAL ILE THR LEU SER LYS SEQRES 9 B 115 ALA TRP SER VAL VAL LYS LYS TYR LEU GLU ALA HET ATP B 401 43 HET ATP B 402 43 HET MG B 403 1 HET MG B 404 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 MG 2(MG 2+) HELIX 1 AA1 THR B 256 LYS B 269 1 14 HELIX 2 AA2 PRO B 275 CYS B 284 1 10 HELIX 3 AA3 PRO B 289 CYS B 297 1 9 HELIX 4 AA4 ASP B 308 HIS B 323 1 16 HELIX 5 AA5 ASP B 327 LEU B 334 1 8 HELIX 6 AA6 SER B 339 GLU B 343 5 5 HELIX 7 AA7 ASN B 348 LEU B 368 1 21 SSBOND 1 CYS B 284 CYS B 297 1555 1555 2.03 LINK OD2 ASP B 308 MG MG B 403 1555 1555 1.84 LINK OE2 GLU B 343 MG MG B 404 1555 1555 1.85 LINK O2G ATP B 401 MG MG B 403 1555 1555 1.82 LINK O2B ATP B 401 MG MG B 403 1555 1555 1.86 LINK O1A ATP B 401 MG MG B 403 1555 1555 1.84 LINK O1G ATP B 402 MG MG B 404 1555 1555 1.80 LINK O1B ATP B 402 MG MG B 404 1555 1555 1.91 LINK O1A ATP B 402 MG MG B 404 1555 1555 1.84 SITE 1 AC1 7 DG A 3 ASN B 306 ILE B 307 ASP B 308 SITE 2 AC1 7 ARG B 309 SER B 310 MG B 403 SITE 1 AC2 11 DG A 3 ARG B 309 SER B 339 LYS B 340 SITE 2 AC2 11 LYS B 342 GLU B 343 ASN B 344 GLU B 345 SITE 3 AC2 11 LYS B 346 TRP B 347 MG B 404 SITE 1 AC3 2 ASP B 308 ATP B 401 SITE 1 AC4 3 GLU B 343 GLU B 345 ATP B 402 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1