HEADER ONCOPROTEIN 21-JUN-18 6GVX TITLE CRYSTAL STRUCTURE OF MATERNAL EMBRYONIC LEUCINE ZIPPER KINASE (MELK) TITLE 2 IN COMPLEX WITH DORSOMORPHIN (COMPOUND C) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATERNAL EMBRYONIC LEUCINE ZIPPER KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HMELK,PROTEIN KINASE EG3,PEG3 KINASE,PROTEIN KINASE PK38, COMPND 5 HPK38,TYROSINE-PROTEIN KINASE MELK; COMPND 6 EC: 2.7.11.1,2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MELK, KIAA0175; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DORSOMORPHIN, MELK, INHIBITOR, CANCER, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.GOLIK,K.P.REMBACZ,K.ZRUBEK,M.ROMANOWSKA,J.BUGUSZ,B.WLADYKA,G.DUBIN REVDAT 3 17-JAN-24 6GVX 1 REMARK REVDAT 2 19-JUN-19 6GVX 1 JRNL REVDAT 1 29-MAY-19 6GVX 0 JRNL AUTH K.P.REMBACZ,K.M.ZRUBEK,P.GOLIK,K.MICHALIK,J.BOGUSZ, JRNL AUTH 2 B.WLADYKA,M.ROMANOWSKA,G.DUBIN JRNL TITL CRYSTAL STRUCTURE OF MATERNAL EMBRYONIC LEUCINE ZIPPER JRNL TITL 2 KINASE (MELK) IN COMPLEX WITH DORSOMORPHIN (COMPOUND C). JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 671 1 2019 JRNL REFN ESSN 1096-0384 JRNL PMID 31108049 JRNL DOI 10.1016/J.ABB.2019.05.014 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 36033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6832 - 5.2650 0.99 2701 142 0.1966 0.2079 REMARK 3 2 5.2650 - 4.1797 1.00 2697 112 0.1627 0.2040 REMARK 3 3 4.1797 - 3.6515 0.99 2636 127 0.1725 0.2183 REMARK 3 4 3.6515 - 3.3178 0.98 2620 139 0.2046 0.2408 REMARK 3 5 3.3178 - 3.0800 1.00 2665 133 0.2173 0.2661 REMARK 3 6 3.0800 - 2.8984 1.00 2657 150 0.2247 0.2501 REMARK 3 7 2.8984 - 2.7533 1.00 2616 148 0.2226 0.2701 REMARK 3 8 2.7533 - 2.6335 0.98 2616 140 0.2414 0.2586 REMARK 3 9 2.6335 - 2.5321 1.00 2638 125 0.2390 0.2648 REMARK 3 10 2.5321 - 2.4447 1.00 2634 140 0.2337 0.2900 REMARK 3 11 2.4447 - 2.3683 1.00 2631 154 0.2469 0.2929 REMARK 3 12 2.3683 - 2.3006 1.00 2628 147 0.2564 0.3091 REMARK 3 13 2.3006 - 2.2400 0.94 2517 120 0.3090 0.3220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5086 REMARK 3 ANGLE : 0.569 6906 REMARK 3 CHIRALITY : 0.021 777 REMARK 3 PLANARITY : 0.002 864 REMARK 3 DIHEDRAL : 9.624 1803 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2002 -13.3456 -6.6468 REMARK 3 T TENSOR REMARK 3 T11: 0.4717 T22: 0.9318 REMARK 3 T33: 0.3594 T12: 0.0033 REMARK 3 T13: -0.0096 T23: 0.2702 REMARK 3 L TENSOR REMARK 3 L11: 5.8240 L22: 9.2620 REMARK 3 L33: 7.7439 L12: -3.0685 REMARK 3 L13: -4.1634 L23: 5.5892 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: -0.1310 S13: 0.1065 REMARK 3 S21: -0.5273 S22: 0.4838 S23: 0.2657 REMARK 3 S31: -0.1011 S32: -0.9063 S33: -0.4692 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1937 -15.1760 8.4939 REMARK 3 T TENSOR REMARK 3 T11: 0.3471 T22: 0.3358 REMARK 3 T33: 0.3529 T12: -0.0195 REMARK 3 T13: 0.0615 T23: 0.0707 REMARK 3 L TENSOR REMARK 3 L11: 4.6831 L22: 0.4232 REMARK 3 L33: 7.0715 L12: 0.4229 REMARK 3 L13: 2.4582 L23: -0.8596 REMARK 3 S TENSOR REMARK 3 S11: -0.1199 S12: -0.0012 S13: 0.0812 REMARK 3 S21: -0.0988 S22: 0.2390 S23: 0.0376 REMARK 3 S31: 0.2952 S32: -0.9307 S33: -0.1096 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2023 -21.1211 12.6267 REMARK 3 T TENSOR REMARK 3 T11: 0.4337 T22: 0.2763 REMARK 3 T33: 0.2661 T12: -0.0795 REMARK 3 T13: -0.0412 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 6.0508 L22: 4.6171 REMARK 3 L33: 3.9329 L12: -1.6326 REMARK 3 L13: -0.0703 L23: -0.2669 REMARK 3 S TENSOR REMARK 3 S11: 0.1570 S12: -0.2313 S13: -0.1444 REMARK 3 S21: -0.0983 S22: -0.0623 S23: -0.2569 REMARK 3 S31: 0.7062 S32: -0.4693 S33: -0.0362 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1527 -14.8286 18.3019 REMARK 3 T TENSOR REMARK 3 T11: 0.2602 T22: 0.3702 REMARK 3 T33: 0.2958 T12: 0.0034 REMARK 3 T13: 0.1067 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.0759 L22: 0.8281 REMARK 3 L33: 4.9607 L12: 0.1701 REMARK 3 L13: 1.5853 L23: -1.1462 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: -0.5196 S13: 0.0349 REMARK 3 S21: 0.2549 S22: 0.0973 S23: 0.1270 REMARK 3 S31: 0.1241 S32: -0.8495 S33: -0.0716 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -3 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8534 -11.2402 -1.7892 REMARK 3 T TENSOR REMARK 3 T11: 0.6936 T22: 0.5514 REMARK 3 T33: 0.3478 T12: -0.2240 REMARK 3 T13: -0.1032 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 2.6803 L22: 8.4788 REMARK 3 L33: 8.9877 L12: 0.5193 REMARK 3 L13: -3.3050 L23: -5.9198 REMARK 3 S TENSOR REMARK 3 S11: 0.3507 S12: -0.2342 S13: -0.1884 REMARK 3 S21: 0.5889 S22: -0.3776 S23: 0.2262 REMARK 3 S31: 0.3024 S32: 0.5933 S33: 0.0247 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9798 -11.3507 -14.0954 REMARK 3 T TENSOR REMARK 3 T11: 0.4183 T22: 0.2401 REMARK 3 T33: 0.3930 T12: -0.0924 REMARK 3 T13: 0.0348 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 3.9603 L22: 0.7839 REMARK 3 L33: 5.1389 L12: 0.5081 REMARK 3 L13: 1.1699 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: -0.4417 S13: -0.3029 REMARK 3 S21: 0.1613 S22: -0.2247 S23: 0.0669 REMARK 3 S31: 0.2833 S32: 0.0467 S33: 0.1246 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1608 -9.3714 -26.0427 REMARK 3 T TENSOR REMARK 3 T11: 0.3724 T22: 0.1806 REMARK 3 T33: 0.2649 T12: -0.0746 REMARK 3 T13: -0.0339 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 7.6156 L22: 1.3266 REMARK 3 L33: 5.3816 L12: -0.3846 REMARK 3 L13: 0.5913 L23: -1.0463 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.0211 S13: -0.0274 REMARK 3 S21: -0.0790 S22: 0.0728 S23: -0.0739 REMARK 3 S31: 0.2234 S32: -0.1845 S33: -0.0313 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 149 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3747 -15.9451 -31.3146 REMARK 3 T TENSOR REMARK 3 T11: 0.6450 T22: 0.3953 REMARK 3 T33: 0.3695 T12: -0.2062 REMARK 3 T13: -0.0652 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.3913 L22: 0.7635 REMARK 3 L33: 3.7849 L12: 0.2756 REMARK 3 L13: 1.4407 L23: 0.1157 REMARK 3 S TENSOR REMARK 3 S11: 0.2343 S12: 0.2417 S13: -0.2722 REMARK 3 S21: -0.1989 S22: 0.0095 S23: 0.0730 REMARK 3 S31: 0.9001 S32: -0.5993 S33: -0.1198 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 284 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0022 1.0535 -18.7022 REMARK 3 T TENSOR REMARK 3 T11: 0.4198 T22: 0.6137 REMARK 3 T33: 0.3565 T12: -0.1776 REMARK 3 T13: 0.0137 T23: 0.0781 REMARK 3 L TENSOR REMARK 3 L11: 6.0337 L22: 8.1517 REMARK 3 L33: 3.0891 L12: 1.8342 REMARK 3 L13: 1.6908 L23: -0.2379 REMARK 3 S TENSOR REMARK 3 S11: 0.2774 S12: 0.2201 S13: 0.2183 REMARK 3 S21: -0.0598 S22: -0.5258 S23: -0.5380 REMARK 3 S31: -0.4731 S32: 1.0656 S33: 0.1930 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36063 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 48.672 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4D2V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, PEG 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.03700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 LEU A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 ASP A 162 REMARK 465 TYR A 163 REMARK 465 HIS A 164 REMARK 465 LEU A 165 REMARK 465 GLN A 166 REMARK 465 THR A 167 REMARK 465 CYS A 168 REMARK 465 SER A 184 REMARK 465 TYR A 185 REMARK 465 LEU A 186 REMARK 465 SER A 291 REMARK 465 VAL A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 ARG A 295 REMARK 465 ASN A 296 REMARK 465 ASN A 297 REMARK 465 LEU A 334 REMARK 465 SER A 335 REMARK 465 SER A 336 REMARK 465 PHE A 337 REMARK 465 SER A 338 REMARK 465 CYS A 339 REMARK 465 GLY A 340 REMARK 465 GLY B 21 REMARK 465 PHE B 22 REMARK 465 LEU B 47 REMARK 465 GLY B 48 REMARK 465 LYS B 158 REMARK 465 GLY B 159 REMARK 465 ASN B 160 REMARK 465 LYS B 161 REMARK 465 ASP B 162 REMARK 465 TYR B 163 REMARK 465 HIS B 164 REMARK 465 LEU B 165 REMARK 465 GLN B 166 REMARK 465 THR B 167 REMARK 465 CYS B 168 REMARK 465 CYS B 169 REMARK 465 LYS B 183 REMARK 465 SER B 184 REMARK 465 TYR B 185 REMARK 465 LEU B 186 REMARK 465 SER B 336 REMARK 465 PHE B 337 REMARK 465 SER B 338 REMARK 465 CYS B 339 REMARK 465 GLY B 340 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -2 CD1 CD2 REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 PHE A 22 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 26 CE NZ REMARK 470 ILE A 31 CG1 CG2 CD1 REMARK 470 LEU A 32 CD1 CD2 REMARK 470 MET A 42 CG SD CE REMARK 470 THR A 46 OG1 CG2 REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 LEU A 51 CG CD1 CD2 REMARK 470 ARG A 53 NE CZ NH1 NH2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LYS A 62 CD CE NZ REMARK 470 ASP A 102 CG OD1 OD2 REMARK 470 ARG A 131 NE CZ NH1 NH2 REMARK 470 LYS A 156 CD CE NZ REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 CYS A 169 SG REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 TYR A 218 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 250 CD CE NZ REMARK 470 LYS A 255 CD CE NZ REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 LYS A 276 CE NZ REMARK 470 ILE A 280 CG1 CG2 CD1 REMARK 470 LEU A 282 CD1 CD2 REMARK 470 ASP A 284 CG OD1 OD2 REMARK 470 VAL A 287 CG1 REMARK 470 ARG A 298 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 299 CG CD OE1 NE2 REMARK 470 ASP A 303 CG OD1 OD2 REMARK 470 SER A 306 OG REMARK 470 LEU A 307 CD1 CD2 REMARK 470 LEU A 321 CD1 CD2 REMARK 470 LYS A 323 CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 ARG A 331 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 2 CD CE NZ REMARK 470 LYS B 9 CE NZ REMARK 470 MET B 42 CG SD CE REMARK 470 ASN B 45 CG OD1 ND2 REMARK 470 THR B 46 OG1 CG2 REMARK 470 SER B 49 OG REMARK 470 ASP B 50 CG OD1 OD2 REMARK 470 LEU B 51 CG CD1 CD2 REMARK 470 ARG B 53 CD NE CZ NH1 NH2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LEU B 76 CG CD1 CD2 REMARK 470 SER B 100 OG REMARK 470 GLN B 101 CG CD OE1 NE2 REMARK 470 ASP B 102 CG OD1 OD2 REMARK 470 ARG B 103 NE CZ NH1 NH2 REMARK 470 GLU B 107 OE1 OE2 REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 ARG B 131 NE CZ NH1 NH2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 LEU B 179 CG CD1 CD2 REMARK 470 GLN B 181 CG CD OE1 NE2 REMARK 470 SER B 188 OG REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 ASP B 211 CG OD1 OD2 REMARK 470 ASP B 212 CG OD1 OD2 REMARK 470 MET B 215 CG SD CE REMARK 470 LEU B 217 CG CD1 CD2 REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 ARG B 223 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 225 CD CE NZ REMARK 470 LYS B 230 CD CE NZ REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 LYS B 255 CE NZ REMARK 470 ARG B 295 CG CD NE CZ NH1 NH2 REMARK 470 THR B 300 OG1 CG2 REMARK 470 LEU B 307 CG CD1 CD2 REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 SER B 335 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 14 -134.52 -116.64 REMARK 500 THR A 78 -153.87 -99.87 REMARK 500 ASP A 102 -76.72 57.88 REMARK 500 ASP A 132 42.11 -153.99 REMARK 500 ASP A 150 78.31 58.73 REMARK 500 LEU A 244 45.18 -95.32 REMARK 500 THR A 288 82.08 -63.11 REMARK 500 ASP A 311 -151.91 -98.38 REMARK 500 HIS B 14 -153.74 -122.76 REMARK 500 THR B 19 -168.76 -110.71 REMARK 500 THR B 78 -159.44 -101.33 REMARK 500 ASP B 102 83.84 55.23 REMARK 500 ARG B 103 116.67 66.39 REMARK 500 ASP B 132 38.54 -153.00 REMARK 500 ASP B 150 81.50 57.83 REMARK 500 GLN B 181 86.27 56.96 REMARK 500 LEU B 244 59.11 -93.94 REMARK 500 TYR B 267 -47.39 -131.30 REMARK 500 ASP B 311 -154.99 -96.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TAK A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TAK B 402 DBREF 6GVX A 1 340 UNP Q14680 MELK_HUMAN 1 340 DBREF 6GVX B 1 340 UNP Q14680 MELK_HUMAN 1 340 SEQADV 6GVX PRO A -3 UNP Q14680 EXPRESSION TAG SEQADV 6GVX LEU A -2 UNP Q14680 EXPRESSION TAG SEQADV 6GVX GLY A -1 UNP Q14680 EXPRESSION TAG SEQADV 6GVX SER A 0 UNP Q14680 EXPRESSION TAG SEQADV 6GVX PRO B -3 UNP Q14680 EXPRESSION TAG SEQADV 6GVX LEU B -2 UNP Q14680 EXPRESSION TAG SEQADV 6GVX GLY B -1 UNP Q14680 EXPRESSION TAG SEQADV 6GVX SER B 0 UNP Q14680 EXPRESSION TAG SEQRES 1 A 344 PRO LEU GLY SER MET LYS ASP TYR ASP GLU LEU LEU LYS SEQRES 2 A 344 TYR TYR GLU LEU HIS GLU THR ILE GLY THR GLY GLY PHE SEQRES 3 A 344 ALA LYS VAL LYS LEU ALA CYS HIS ILE LEU THR GLY GLU SEQRES 4 A 344 MET VAL ALA ILE LYS ILE MET ASP LYS ASN THR LEU GLY SEQRES 5 A 344 SER ASP LEU PRO ARG ILE LYS THR GLU ILE GLU ALA LEU SEQRES 6 A 344 LYS ASN LEU ARG HIS GLN HIS ILE CYS GLN LEU TYR HIS SEQRES 7 A 344 VAL LEU GLU THR ALA ASN LYS ILE PHE MET VAL LEU GLU SEQRES 8 A 344 TYR CYS PRO GLY GLY GLU LEU PHE ASP TYR ILE ILE SER SEQRES 9 A 344 GLN ASP ARG LEU SER GLU GLU GLU THR ARG VAL VAL PHE SEQRES 10 A 344 ARG GLN ILE VAL SER ALA VAL ALA TYR VAL HIS SER GLN SEQRES 11 A 344 GLY TYR ALA HIS ARG ASP LEU LYS PRO GLU ASN LEU LEU SEQRES 12 A 344 PHE ASP GLU TYR HIS LYS LEU LYS LEU ILE ASP PHE GLY SEQRES 13 A 344 LEU CYS ALA LYS PRO LYS GLY ASN LYS ASP TYR HIS LEU SEQRES 14 A 344 GLN THR CYS CYS GLY SER LEU ALA TYR ALA ALA PRO GLU SEQRES 15 A 344 LEU ILE GLN GLY LYS SER TYR LEU GLY SER GLU ALA ASP SEQRES 16 A 344 VAL TRP SER MET GLY ILE LEU LEU TYR VAL LEU MET CYS SEQRES 17 A 344 GLY PHE LEU PRO PHE ASP ASP ASP ASN VAL MET ALA LEU SEQRES 18 A 344 TYR LYS LYS ILE MET ARG GLY LYS TYR ASP VAL PRO LYS SEQRES 19 A 344 TRP LEU SER PRO SER SER ILE LEU LEU LEU GLN GLN MET SEQRES 20 A 344 LEU GLN VAL ASP PRO LYS LYS ARG ILE SER MET LYS ASN SEQRES 21 A 344 LEU LEU ASN HIS PRO TRP ILE MET GLN ASP TYR ASN TYR SEQRES 22 A 344 PRO VAL GLU TRP GLN SER LYS ASN PRO PHE ILE HIS LEU SEQRES 23 A 344 ASP ASP ASP CYS VAL THR GLU LEU SER VAL HIS HIS ARG SEQRES 24 A 344 ASN ASN ARG GLN THR MET GLU ASP LEU ILE SER LEU TRP SEQRES 25 A 344 GLN TYR ASP HIS LEU THR ALA THR TYR LEU LEU LEU LEU SEQRES 26 A 344 ALA LYS LYS ALA ARG GLY LYS PRO VAL ARG LEU ARG LEU SEQRES 27 A 344 SER SER PHE SER CYS GLY SEQRES 1 B 344 PRO LEU GLY SER MET LYS ASP TYR ASP GLU LEU LEU LYS SEQRES 2 B 344 TYR TYR GLU LEU HIS GLU THR ILE GLY THR GLY GLY PHE SEQRES 3 B 344 ALA LYS VAL LYS LEU ALA CYS HIS ILE LEU THR GLY GLU SEQRES 4 B 344 MET VAL ALA ILE LYS ILE MET ASP LYS ASN THR LEU GLY SEQRES 5 B 344 SER ASP LEU PRO ARG ILE LYS THR GLU ILE GLU ALA LEU SEQRES 6 B 344 LYS ASN LEU ARG HIS GLN HIS ILE CYS GLN LEU TYR HIS SEQRES 7 B 344 VAL LEU GLU THR ALA ASN LYS ILE PHE MET VAL LEU GLU SEQRES 8 B 344 TYR CYS PRO GLY GLY GLU LEU PHE ASP TYR ILE ILE SER SEQRES 9 B 344 GLN ASP ARG LEU SER GLU GLU GLU THR ARG VAL VAL PHE SEQRES 10 B 344 ARG GLN ILE VAL SER ALA VAL ALA TYR VAL HIS SER GLN SEQRES 11 B 344 GLY TYR ALA HIS ARG ASP LEU LYS PRO GLU ASN LEU LEU SEQRES 12 B 344 PHE ASP GLU TYR HIS LYS LEU LYS LEU ILE ASP PHE GLY SEQRES 13 B 344 LEU CYS ALA LYS PRO LYS GLY ASN LYS ASP TYR HIS LEU SEQRES 14 B 344 GLN THR CYS CYS GLY SER LEU ALA TYR ALA ALA PRO GLU SEQRES 15 B 344 LEU ILE GLN GLY LYS SER TYR LEU GLY SER GLU ALA ASP SEQRES 16 B 344 VAL TRP SER MET GLY ILE LEU LEU TYR VAL LEU MET CYS SEQRES 17 B 344 GLY PHE LEU PRO PHE ASP ASP ASP ASN VAL MET ALA LEU SEQRES 18 B 344 TYR LYS LYS ILE MET ARG GLY LYS TYR ASP VAL PRO LYS SEQRES 19 B 344 TRP LEU SER PRO SER SER ILE LEU LEU LEU GLN GLN MET SEQRES 20 B 344 LEU GLN VAL ASP PRO LYS LYS ARG ILE SER MET LYS ASN SEQRES 21 B 344 LEU LEU ASN HIS PRO TRP ILE MET GLN ASP TYR ASN TYR SEQRES 22 B 344 PRO VAL GLU TRP GLN SER LYS ASN PRO PHE ILE HIS LEU SEQRES 23 B 344 ASP ASP ASP CYS VAL THR GLU LEU SER VAL HIS HIS ARG SEQRES 24 B 344 ASN ASN ARG GLN THR MET GLU ASP LEU ILE SER LEU TRP SEQRES 25 B 344 GLN TYR ASP HIS LEU THR ALA THR TYR LEU LEU LEU LEU SEQRES 26 B 344 ALA LYS LYS ALA ARG GLY LYS PRO VAL ARG LEU ARG LEU SEQRES 27 B 344 SER SER PHE SER CYS GLY HET EDO A 401 4 HET TAK A 402 30 HET EDO B 401 4 HET TAK B 402 39 HETNAM EDO 1,2-ETHANEDIOL HETNAM TAK 6-[4-(2-PIPERIDIN-1-YLETHOXY)PHENYL]-3-PYRIDIN-4- HETNAM 2 TAK YLPYRAZOLO[1,5-A]PYRIMIDINE HETSYN EDO ETHYLENE GLYCOL HETSYN TAK DORSOMORPHIN FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 TAK 2(C24 H25 N5 O) FORMUL 7 HOH *133(H2 O) HELIX 1 AA1 MET A 1 ASP A 5 5 5 HELIX 2 AA2 GLU A 6 LYS A 9 5 4 HELIX 3 AA3 LEU A 51 LEU A 64 1 14 HELIX 4 AA4 LEU A 94 GLN A 101 1 8 HELIX 5 AA5 SER A 105 GLN A 126 1 22 HELIX 6 AA6 SER A 171 ALA A 175 5 5 HELIX 7 AA7 ALA A 176 GLY A 182 1 7 HELIX 8 AA8 SER A 188 GLY A 205 1 18 HELIX 9 AA9 ASN A 213 GLY A 224 1 12 HELIX 10 AB1 SER A 233 LEU A 244 1 12 HELIX 11 AB2 SER A 253 ASN A 259 1 7 HELIX 12 AB3 HIS A 260 GLN A 265 1 6 HELIX 13 AB4 ASP A 283 THR A 288 1 6 HELIX 14 AB5 GLN A 299 SER A 306 1 8 HELIX 15 AB6 ASP A 311 GLY A 327 1 17 HELIX 16 AB7 MET B 1 ASP B 5 5 5 HELIX 17 AB8 GLU B 6 LYS B 9 5 4 HELIX 18 AB9 ASP B 50 LEU B 64 1 15 HELIX 19 AC1 LEU B 94 ASP B 102 1 9 HELIX 20 AC2 SER B 105 GLN B 126 1 22 HELIX 21 AC3 LYS B 134 GLU B 136 5 3 HELIX 22 AC4 SER B 171 ALA B 175 5 5 HELIX 23 AC5 SER B 188 GLY B 205 1 18 HELIX 24 AC6 ASN B 213 GLY B 224 1 12 HELIX 25 AC7 SER B 233 LEU B 244 1 12 HELIX 26 AC8 SER B 253 ASN B 259 1 7 HELIX 27 AC9 HIS B 260 GLN B 265 1 6 HELIX 28 AD1 ASP B 283 HIS B 294 1 12 HELIX 29 AD2 ASN B 297 SER B 306 1 10 HELIX 30 AD3 ASP B 311 ARG B 326 1 16 SHEET 1 AA1 5 TYR A 11 GLY A 18 0 SHEET 2 AA1 5 LYS A 24 HIS A 30 -1 O LEU A 27 N HIS A 14 SHEET 3 AA1 5 MET A 36 ASP A 43 -1 O ILE A 41 N LYS A 24 SHEET 4 AA1 5 LYS A 81 GLU A 87 -1 O LEU A 86 N ALA A 38 SHEET 5 AA1 5 LEU A 72 GLU A 77 -1 N LEU A 76 O PHE A 83 SHEET 1 AA2 3 GLY A 92 GLU A 93 0 SHEET 2 AA2 3 LEU A 138 PHE A 140 -1 O PHE A 140 N GLY A 92 SHEET 3 AA2 3 LEU A 146 LEU A 148 -1 O LYS A 147 N LEU A 139 SHEET 1 AA3 5 TYR B 11 GLY B 18 0 SHEET 2 AA3 5 LYS B 24 HIS B 30 -1 O LEU B 27 N HIS B 14 SHEET 3 AA3 5 MET B 36 ASP B 43 -1 O ILE B 41 N LYS B 24 SHEET 4 AA3 5 LYS B 81 GLU B 87 -1 O LEU B 86 N ALA B 38 SHEET 5 AA3 5 LEU B 72 GLU B 77 -1 N LEU B 76 O PHE B 83 SHEET 1 AA4 3 GLY B 92 GLU B 93 0 SHEET 2 AA4 3 LEU B 138 PHE B 140 -1 O PHE B 140 N GLY B 92 SHEET 3 AA4 3 LEU B 146 LEU B 148 -1 O LYS B 147 N LEU B 139 SITE 1 AC1 2 ALA A 121 MET A 254 SITE 1 AC2 10 ALA A 38 LYS A 40 LEU A 86 GLU A 87 SITE 2 AC2 10 TYR A 88 CYS A 89 PRO A 90 GLY A 91 SITE 3 AC2 10 LEU A 139 GLU B 15 SITE 1 AC3 2 GLU B 289 ARG B 331 SITE 1 AC4 9 GLU A 15 ALA B 38 LEU B 86 GLU B 87 SITE 2 AC4 9 TYR B 88 CYS B 89 PRO B 90 GLY B 91 SITE 3 AC4 9 LEU B 139 CRYST1 65.475 80.074 77.975 90.00 110.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015273 0.000000 0.005736 0.00000 SCALE2 0.000000 0.012488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013699 0.00000