HEADER TRANSFERASE 26-JUN-18 6GX1 TITLE BLOOD GROUP SYNTHASE AAGLYB IN COMPLEX WITH UDP-GALNAC AND TITLE 2 CRYOPROTECTED WITH PEG 3350 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABO BLOOD GROUP (TRANSFERASE A, ALPHA 1-3-N- COMPND 3 ACETYLGALACTOSAMINYLTRANSFERASE TRANSFERASE B, ALPHA 1-3- COMPND 4 GALACTOSYLTRANSFERASE); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BLOOD GROUP SYNTHASE, GLYCOSYLTRANSFERASE, DUAL SPECIFICITY, CIS-AB KEYWDS 2 MUTANT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ROCHA,A.ROYANT REVDAT 2 17-JAN-24 6GX1 1 LINK REVDAT 1 10-JUL-19 6GX1 0 JRNL AUTH J.ROCHA,G.O.BATOT,M.M.PALCIC,C.BRETON,A.ROYANT JRNL TITL BLOOD GROUP SYNTHASE AAGLYB IN COMPLEX WITH UDP-GALNAC AND JRNL TITL 2 CRYOPROTECTED WITH PEG 3350 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2160 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2873 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2343 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.749 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2702 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2527 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3703 ; 1.535 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5817 ; 0.947 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.356 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;33.118 ;22.441 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;12.423 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.134 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3069 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 679 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1248 ; 0.971 ; 1.374 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1247 ; 0.959 ; 1.372 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1595 ; 1.487 ; 2.059 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1596 ; 1.486 ; 2.061 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1454 ; 1.381 ; 1.607 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1454 ; 1.381 ; 1.607 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2109 ; 2.238 ; 2.337 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11591 ; 4.112 ;27.025 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11262 ; 3.819 ;26.441 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GX1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41668 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 42.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3ZGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPS BUFFER, MAGNESIUM SULFATE, REMARK 280 AMMONIUM SULFATE AND PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.90800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.90800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.31750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.19300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.31750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.19300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.90800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.31750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.19300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.90800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.31750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.19300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -39.90800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 516 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 57 REMARK 465 ALA A 58 REMARK 465 ILE A 59 REMARK 465 GLY A 60 REMARK 465 LYS A 346 REMARK 465 ASN A 347 REMARK 465 HIS A 348 REMARK 465 GLN A 349 REMARK 465 ALA A 350 REMARK 465 VAL A 351 REMARK 465 ARG A 352 REMARK 465 ASN A 353 REMARK 465 PRO A 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 124 -128.08 53.92 REMARK 500 ARG A 198 -86.33 -107.36 REMARK 500 THR A 226 167.56 179.77 REMARK 500 THR A 245 46.15 -88.99 REMARK 500 PHE A 269 100.33 -161.64 REMARK 500 HIS A 301 -130.45 60.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 822 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 211 OD2 REMARK 620 2 ASP A 213 OD1 110.9 REMARK 620 3 UDP A 403 O1A 90.5 78.9 REMARK 620 4 UDP A 403 O3B 125.0 121.7 85.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 213 OD1 REMARK 620 2 ASP A 213 OD2 67.2 REMARK 620 3 HOH A 501 O 157.0 97.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 213 OD2 REMARK 620 2 UD2 A 402 O1A 99.3 REMARK 620 3 UD2 A 402 O1B 170.9 89.8 REMARK 620 4 HOH A 501 O 83.1 177.6 87.8 REMARK 620 5 HOH A 503 O 88.9 95.9 90.9 84.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD2 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZGF RELATED DB: PDB REMARK 900 RELATED ID: 3ZGG RELATED DB: PDB REMARK 900 RELATED ID: 5M79 RELATED DB: PDB REMARK 900 RELATED ID: 5M7A RELATED DB: PDB REMARK 900 RELATED ID: 5M7B RELATED DB: PDB REMARK 900 RELATED ID: 5M7C RELATED DB: PDB REMARK 900 RELATED ID: 5M7D RELATED DB: PDB DBREF 6GX1 A 64 354 UNP F0X360 F0X360_HUMAN 54 344 SEQADV 6GX1 MET A 57 UNP F0X360 INITIATING METHIONINE SEQADV 6GX1 ALA A 58 UNP F0X360 EXPRESSION TAG SEQADV 6GX1 ILE A 59 UNP F0X360 EXPRESSION TAG SEQADV 6GX1 GLY A 60 UNP F0X360 EXPRESSION TAG SEQADV 6GX1 GLU A 61 UNP F0X360 EXPRESSION TAG SEQADV 6GX1 PHE A 62 UNP F0X360 EXPRESSION TAG SEQADV 6GX1 MET A 63 UNP F0X360 EXPRESSION TAG SEQADV 6GX1 GLY A 266 UNP F0X360 LEU 256 ENGINEERED MUTATION SEQRES 1 A 298 MET ALA ILE GLY GLU PHE MET VAL SER LEU PRO ARG MET SEQRES 2 A 298 VAL TYR PRO GLN PRO LYS VAL LEU THR PRO CYS ARG LYS SEQRES 3 A 298 ASP VAL LEU VAL VAL THR PRO TRP LEU ALA PRO ILE VAL SEQRES 4 A 298 TRP GLU GLY THR PHE ASN ILE ASP ILE LEU ASN GLU GLN SEQRES 5 A 298 PHE ARG LEU GLN ASN THR THR ILE GLY LEU THR VAL PHE SEQRES 6 A 298 ALA ILE LYS LYS TYR VAL ALA PHE LEU LYS LEU PHE LEU SEQRES 7 A 298 GLU THR ALA GLU LYS HIS PHE MET VAL GLY HIS ARG VAL SEQRES 8 A 298 HIS TYR TYR VAL PHE THR ASP GLN PRO ALA ALA VAL PRO SEQRES 9 A 298 ARG VAL THR LEU GLY THR GLY ARG GLN LEU SER VAL LEU SEQRES 10 A 298 GLU VAL ARG ALA TYR LYS ARG TRP GLN ASP VAL SER MET SEQRES 11 A 298 ARG ARG MET GLU MET ILE SER ASP PHE CYS GLU ARG ARG SEQRES 12 A 298 PHE LEU SER GLU VAL ASP TYR LEU VAL CYS VAL ASP VAL SEQRES 13 A 298 ASP MET GLU PHE ARG ASP HIS VAL GLY VAL GLU ILE LEU SEQRES 14 A 298 THR PRO LEU PHE GLY THR LEU HIS PRO GLY PHE TYR GLY SEQRES 15 A 298 SER SER ARG GLU ALA PHE THR TYR GLU ARG ARG PRO GLN SEQRES 16 A 298 SER GLN ALA TYR ILE PRO LYS ASP GLU GLY ASP PHE TYR SEQRES 17 A 298 TYR GLY GLY ALA PHE PHE GLY GLY SER VAL GLN GLU VAL SEQRES 18 A 298 GLN ARG LEU THR ARG ALA CYS HIS GLN ALA MET MET VAL SEQRES 19 A 298 ASP GLN ALA ASN GLY ILE GLU ALA VAL TRP HIS ASP GLU SEQRES 20 A 298 SER HIS LEU ASN LYS TYR LEU LEU ARG HIS LYS PRO THR SEQRES 21 A 298 LYS VAL LEU SER PRO GLU TYR LEU TRP ASP GLN GLN LEU SEQRES 22 A 298 LEU GLY TRP PRO ALA VAL LEU ARG LYS LEU ARG PHE THR SEQRES 23 A 298 ALA VAL PRO LYS ASN HIS GLN ALA VAL ARG ASN PRO HET MN A 401 3 HET UD2 A 402 39 HET UDP A 403 25 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET PEG A 407 7 HETNAM MN MANGANESE (II) ION HETNAM UD2 URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN UD2 (2R,3R,4R,5R,6R)-3-(ACETYLAMINO)-4,5-DIHYDROXY-6- HETSYN 2 UD2 (HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,4R, HETSYN 3 UD2 5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4- HETSYN 4 UD2 DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETSYN 5 UD2 DIPHOSPHATE FORMUL 2 MN MN 2+ FORMUL 3 UD2 C17 H27 N3 O17 P2 FORMUL 4 UDP C9 H14 N2 O12 P2 FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 PEG C4 H10 O3 FORMUL 9 HOH *322(H2 O) HELIX 1 AA1 ASN A 101 GLN A 112 1 12 HELIX 2 AA2 ILE A 123 ALA A 128 5 6 HELIX 3 AA3 PHE A 129 PHE A 141 1 13 HELIX 4 AA4 ARG A 180 ARG A 198 1 19 HELIX 5 AA5 ARG A 198 VAL A 204 1 7 HELIX 6 AA6 GLY A 221 LEU A 225 5 5 HELIX 7 AA7 SER A 240 PHE A 244 5 5 HELIX 8 AA8 VAL A 274 ASN A 294 1 21 HELIX 9 AA9 TRP A 300 HIS A 313 1 14 HELIX 10 AB1 PRO A 321 LEU A 324 5 4 HELIX 11 AB2 ASP A 326 GLY A 331 1 6 SHEET 1 AA1 8 ILE A 94 VAL A 95 0 SHEET 2 AA1 8 LYS A 317 LEU A 319 1 O VAL A 318 N VAL A 95 SHEET 3 AA1 8 LEU A 228 THR A 231 1 N GLY A 230 O LEU A 319 SHEET 4 AA1 8 PHE A 269 SER A 273 -1 O GLY A 271 N PHE A 229 SHEET 5 AA1 8 TYR A 206 VAL A 210 -1 N CYS A 209 O PHE A 270 SHEET 6 AA1 8 THR A 115 PHE A 121 1 N GLY A 117 O TYR A 206 SHEET 7 AA1 8 ARG A 146 THR A 153 1 O ARG A 146 N ILE A 116 SHEET 8 AA1 8 ARG A 168 GLU A 174 1 O GLN A 169 N TYR A 149 SHEET 1 AA2 2 MET A 214 PHE A 216 0 SHEET 2 AA2 2 PHE A 341 ALA A 343 -1 O THR A 342 N GLU A 215 LINK OD2 ASP A 211 MN B MN A 401 1555 1555 2.42 LINK OD1 ASP A 213 MN B MN A 401 1555 1555 2.44 LINK OD1 ASP A 213 MN C MN A 401 1555 1555 2.14 LINK OD2 ASP A 213 MN C MN A 401 1555 1555 1.78 LINK OD2 ASP A 213 MN A MN A 401 1555 1555 2.28 LINK MN A MN A 401 O1AAUD2 A 402 1555 1555 1.99 LINK MN A MN A 401 O1BAUD2 A 402 1555 1555 2.06 LINK MN B MN A 401 O1ABUDP A 403 1555 1555 2.07 LINK MN B MN A 401 O3BBUDP A 403 1555 1555 2.05 LINK MN A MN A 401 O HOH A 501 1555 1555 1.94 LINK MN C MN A 401 O HOH A 501 1555 1555 1.96 LINK MN A MN A 401 O HOH A 503 1555 1555 2.26 SITE 1 AC1 8 ASP A 211 ASP A 213 UD2 A 402 UDP A 403 SITE 2 AC1 8 HOH A 501 HOH A 503 HOH A 690 HOH A 753 SITE 1 AC2 22 PHE A 121 ALA A 122 ILE A 123 LYS A 124 SITE 2 AC2 22 TYR A 126 TRP A 181 VAL A 184 ARG A 188 SITE 3 AC2 22 ASP A 211 VAL A 212 ASP A 213 TRP A 300 SITE 4 AC2 22 MN A 401 UDP A 403 HOH A 501 HOH A 503 SITE 5 AC2 22 HOH A 509 HOH A 518 HOH A 541 HOH A 579 SITE 6 AC2 22 HOH A 601 HOH A 602 SITE 1 AC3 16 PHE A 121 ILE A 123 TYR A 126 VAL A 184 SITE 2 AC3 16 ARG A 188 ASP A 211 VAL A 212 ASP A 213 SITE 3 AC3 16 MN A 401 UD2 A 402 HOH A 501 HOH A 503 SITE 4 AC3 16 HOH A 541 HOH A 602 HOH A 690 HOH A 734 SITE 1 AC4 6 ARG A 110 ARG A 146 THR A 166 GLY A 167 SITE 2 AC4 6 HOH A 554 HOH A 649 SITE 1 AC5 4 ARG A 176 TYR A 178 LYS A 179 HOH A 502 SITE 1 AC6 5 ARG A 198 ARG A 199 GLN A 253 HOH A 578 SITE 2 AC6 5 HOH A 701 SITE 1 AC7 8 HIS A 140 HIS A 219 HOH A 539 HOH A 567 SITE 2 AC7 8 HOH A 663 HOH A 762 HOH A 764 HOH A 767 CRYST1 52.635 148.386 79.816 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012529 0.00000