HEADER MEMBRANE PROTEIN 27-JUN-18 6GXC TITLE BACTERIAL OLIGOSACCHARYLTRANSFERASE PGLB IN COMPLEX WITH AN INHIBITORY TITLE 2 PEPTIDE AND A REACTIVE LIPID-LINKED OLIGOSACCHARIDE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNDECAPRENYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN COMPND 3 GLYCOTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PROTEIN GLYCOSYLATION B; COMPND 6 EC: 2.4.99.19; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLY-ASP-GLN-DAB-ALA-THR-PPN-GLY; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER LARI (STRAIN RM2100 / D67 / ATCC SOURCE 3 BAA-1060); SOURCE 4 ORGANISM_TAXID: 306263; SOURCE 5 STRAIN: RM2100 / D67 / ATCC BAA-1060; SOURCE 6 GENE: PGLB, CLA_1253; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CAMPYLOBACTER LARI RM2100; SOURCE 11 ORGANISM_TAXID: 306263; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLYCOSYLTRANSFERASE, LIPID-LINKED OLIGOSACCHARIDE, TERNARY COMPLEX, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.NAPIORKOWSKA,K.P.LOCHER,J.BOILEVIN,T.DARBRE,J.-L.REYMOND REVDAT 1 14-NOV-18 6GXC 0 JRNL AUTH M.NAPIORKOWSKA,J.BOILEVIN,T.DARBRE,J.L.REYMOND,K.P.LOCHER JRNL TITL STRUCTURE OF BACTERIAL OLIGOSACCHARYLTRANSFERASE PGLB BOUND JRNL TITL 2 TO A REACTIVE LLO AND AN INHIBITORY PEPTIDE. JRNL REF SCI REP V. 8 16297 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 30389987 JRNL DOI 10.1038/S41598-018-34534-0 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.12 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 22172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0972 - 8.1768 0.99 1670 165 0.2877 0.3395 REMARK 3 2 8.1768 - 6.4985 0.99 1577 157 0.2517 0.2871 REMARK 3 3 6.4985 - 5.6794 1.00 1593 157 0.2403 0.2725 REMARK 3 4 5.6794 - 5.1613 1.00 1565 155 0.2017 0.2540 REMARK 3 5 5.1613 - 4.7919 1.00 1564 156 0.1951 0.2030 REMARK 3 6 4.7919 - 4.5098 1.00 1552 153 0.2007 0.2114 REMARK 3 7 4.5098 - 4.2842 1.00 1555 154 0.2130 0.2422 REMARK 3 8 4.2842 - 4.0978 1.00 1540 152 0.2363 0.2657 REMARK 3 9 4.0978 - 3.9402 1.00 1542 153 0.2607 0.2899 REMARK 3 10 3.9402 - 3.8044 1.00 1537 153 0.2691 0.2629 REMARK 3 11 3.8044 - 3.6855 0.99 1541 152 0.2907 0.3099 REMARK 3 12 3.6855 - 3.5802 0.88 1356 134 0.2936 0.3276 REMARK 3 13 3.5802 - 3.4860 0.67 1018 101 0.2933 0.3109 REMARK 3 14 3.4860 - 3.4010 0.36 564 56 0.2914 0.3084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6090 REMARK 3 ANGLE : 1.157 8252 REMARK 3 CHIRALITY : 0.064 917 REMARK 3 PLANARITY : 0.009 1011 REMARK 3 DIHEDRAL : 15.200 3559 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GXC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24002 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.401 REMARK 200 RESOLUTION RANGE LOW (A) : 41.094 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 33.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX V1.12 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M GLYCINE, PH 9.4, 0.15M MAGNESIUM REMARK 280 ACETATE, AND 30% PEG400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.90500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.94500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.94500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.90500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 604 REMARK 465 LYS A 605 REMARK 465 LYS A 606 REMARK 465 GLN A 607 REMARK 465 ARG A 712 REMARK 465 GLU A 713 REMARK 465 PHE A 714 REMARK 465 HIS A 715 REMARK 465 HIS A 716 REMARK 465 HIS A 717 REMARK 465 HIS A 718 REMARK 465 HIS A 719 REMARK 465 HIS A 720 REMARK 465 HIS A 721 REMARK 465 HIS A 722 REMARK 465 HIS A 723 REMARK 465 HIS A 724 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLY B 10 N CA REMARK 480 GLY B 17 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER A 609 OD1 ASN A 620 1.97 REMARK 500 NH2 ARG A 31 O SER A 139 2.07 REMARK 500 NH1 ARG A 375 O17 FFK A 806 2.14 REMARK 500 O SER A 236 NZ LYS A 243 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 42 ND2 ASN A 586 4557 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 75 10.69 80.47 REMARK 500 TYR A 79 32.74 -75.52 REMARK 500 ASN A 142 -66.65 -28.01 REMARK 500 THR A 148 16.32 -144.12 REMARK 500 TYR A 196 88.51 -155.38 REMARK 500 VAL A 216 -63.96 -103.35 REMARK 500 LYS A 260 -156.92 59.18 REMARK 500 SER A 280 3.71 -64.66 REMARK 500 LEU A 283 -29.77 81.86 REMARK 500 ASN A 302 48.34 73.68 REMARK 500 ASP A 305 -7.95 80.87 REMARK 500 GLU A 319 -37.21 -37.87 REMARK 500 SER A 335 146.38 -172.08 REMARK 500 ASP A 352 -34.43 -136.04 REMARK 500 ARG A 375 -8.41 -49.10 REMARK 500 LYS A 405 98.73 -69.33 REMARK 500 ASP A 465 -38.29 -37.27 REMARK 500 HIS A 485 36.64 -153.28 REMARK 500 ASN A 550 50.33 -103.23 REMARK 500 ASN A 581 4.59 -68.70 REMARK 500 LEU A 593 80.25 58.99 REMARK 500 LEU A 601 -74.59 -84.56 REMARK 500 ASP A 602 -151.91 -127.84 REMARK 500 SER A 609 115.07 50.09 REMARK 500 LEU A 612 156.18 68.51 REMARK 500 ILE A 653 -57.28 -126.47 REMARK 500 ALA A 705 149.24 -175.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 75 ASP A 76 147.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 802 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 73 OE1 REMARK 620 2 ASP A 76 OD2 95.6 REMARK 620 3 ASP A 475 OD1 94.6 152.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FFK A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues PPN B 16 REMARK 800 through GLY B 17 bound to THR B 15 DBREF 6GXC A 1 712 UNP B9KDD4 PGLB_CAMLR 1 712 DBREF 6GXC B 10 17 PDB 6GXC 6GXC 10 17 SEQADV 6GXC GLU A 2 UNP B9KDD4 LYS 2 ENGINEERED MUTATION SEQADV 6GXC ALA A 17 UNP B9KDD4 CYS 17 ENGINEERED MUTATION SEQADV 6GXC ALA A 30 UNP B9KDD4 CYS 30 ENGINEERED MUTATION SEQADV 6GXC THR A 108 UNP B9KDD4 ALA 108 ENGINEERED MUTATION SEQADV 6GXC LEU A 350 UNP B9KDD4 CYS 350 ENGINEERED MUTATION SEQADV 6GXC GLN A 535 UNP B9KDD4 ASN 535 ENGINEERED MUTATION SEQADV 6GXC PRO A 549 UNP B9KDD4 LYS 549 ENGINEERED MUTATION SEQADV 6GXC ASN A 550 UNP B9KDD4 ASP 550 ENGINEERED MUTATION SEQADV 6GXC ILE A 553 UNP B9KDD4 PHE 553 ENGINEERED MUTATION SEQADV 6GXC PRO A 556 UNP B9KDD4 ASN 556 ENGINEERED MUTATION SEQADV 6GXC PRO A 600 UNP B9KDD4 ALA 600 ENGINEERED MUTATION SEQADV 6GXC LEU A 601 UNP B9KDD4 ILE 601 ENGINEERED MUTATION SEQADV 6GXC ASP A 602 UNP B9KDD4 ALA 602 ENGINEERED MUTATION SEQADV 6GXC LYS A 606 UNP B9KDD4 THR 606 ENGINEERED MUTATION SEQADV 6GXC GLN A 607 UNP B9KDD4 THR 607 ENGINEERED MUTATION SEQADV 6GXC ILE A 610 UNP B9KDD4 VAL 610 ENGINEERED MUTATION SEQADV 6GXC THR A 611 UNP B9KDD4 MET 611 ENGINEERED MUTATION SEQADV 6GXC SER A 619 UNP B9KDD4 ILE 619 ENGINEERED MUTATION SEQADV 6GXC TYR A 622 UNP B9KDD4 PHE 622 ENGINEERED MUTATION SEQADV 6GXC SER A 624 UNP B9KDD4 ALA 624 ENGINEERED MUTATION SEQADV 6GXC ILE A 627 UNP B9KDD4 VAL 627 ENGINEERED MUTATION SEQADV 6GXC ASN A 630 UNP B9KDD4 ALA 630 ENGINEERED MUTATION SEQADV 6GXC TYR A 663 UNP B9KDD4 PHE 663 ENGINEERED MUTATION SEQADV 6GXC TYR A 670 UNP B9KDD4 PHE 670 ENGINEERED MUTATION SEQADV 6GXC GLU A 713 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC PHE A 714 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC HIS A 715 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC HIS A 716 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC HIS A 717 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC HIS A 718 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC HIS A 719 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC HIS A 720 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC HIS A 721 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC HIS A 722 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC HIS A 723 UNP B9KDD4 EXPRESSION TAG SEQADV 6GXC HIS A 724 UNP B9KDD4 EXPRESSION TAG SEQRES 1 A 724 MET GLU LEU GLN GLN ASN PHE THR ASP ASN ASN SER ILE SEQRES 2 A 724 LYS TYR THR ALA ILE LEU ILE LEU ILE ALA PHE ALA PHE SEQRES 3 A 724 SER VAL LEU ALA ARG LEU TYR TRP VAL ALA TRP ALA SER SEQRES 4 A 724 GLU PHE TYR GLU PHE PHE PHE ASN ASP GLN LEU MET ILE SEQRES 5 A 724 THR THR ASN ASP GLY TYR ALA PHE ALA GLU GLY ALA ARG SEQRES 6 A 724 ASP MET ILE ALA GLY PHE HIS GLN PRO ASN ASP LEU SER SEQRES 7 A 724 TYR PHE GLY SER SER LEU SER THR LEU THR TYR TRP LEU SEQRES 8 A 724 TYR SER ILE LEU PRO PHE SER PHE GLU SER ILE ILE LEU SEQRES 9 A 724 TYR MET SER THR PHE PHE ALA SER LEU ILE VAL VAL PRO SEQRES 10 A 724 ILE ILE LEU ILE ALA ARG GLU TYR LYS LEU THR THR TYR SEQRES 11 A 724 GLY PHE ILE ALA ALA LEU LEU GLY SER ILE ALA ASN SER SEQRES 12 A 724 TYR TYR ASN ARG THR MET SER GLY TYR TYR ASP THR ASP SEQRES 13 A 724 MET LEU VAL LEU VAL LEU PRO MET LEU ILE LEU LEU THR SEQRES 14 A 724 PHE ILE ARG LEU THR ILE ASN LYS ASP ILE PHE THR LEU SEQRES 15 A 724 LEU LEU SER PRO VAL PHE ILE MET ILE TYR LEU TRP TRP SEQRES 16 A 724 TYR PRO SER SER TYR SER LEU ASN PHE ALA MET ILE GLY SEQRES 17 A 724 LEU PHE GLY LEU TYR THR LEU VAL PHE HIS ARG LYS GLU SEQRES 18 A 724 LYS ILE PHE TYR LEU THR ILE ALA LEU MET ILE ILE ALA SEQRES 19 A 724 LEU SER MET LEU ALA TRP GLN TYR LYS LEU ALA LEU ILE SEQRES 20 A 724 VAL LEU LEU PHE ALA ILE PHE ALA PHE LYS GLU GLU LYS SEQRES 21 A 724 ILE ASN PHE TYR MET ILE TRP ALA LEU ILE PHE ILE SER SEQRES 22 A 724 ILE LEU ILE LEU HIS LEU SER GLY GLY LEU ASP PRO VAL SEQRES 23 A 724 LEU TYR GLN LEU LYS PHE TYR VAL PHE LYS ALA SER ASP SEQRES 24 A 724 VAL GLN ASN LEU LYS ASP ALA ALA PHE MET TYR PHE ASN SEQRES 25 A 724 VAL ASN GLU THR ILE MET GLU VAL ASN THR ILE ASP PRO SEQRES 26 A 724 GLU VAL PHE MET GLN ARG ILE SER SER SER VAL LEU VAL SEQRES 27 A 724 PHE ILE LEU SER PHE ILE GLY PHE ILE LEU LEU LEU LYS SEQRES 28 A 724 ASP HIS LYS SER MET LEU LEU ALA LEU PRO MET LEU ALA SEQRES 29 A 724 LEU GLY PHE MET ALA LEU ARG ALA GLY LEU ARG PHE THR SEQRES 30 A 724 ILE TYR ALA VAL PRO VAL MET ALA LEU GLY PHE GLY TYR SEQRES 31 A 724 PHE LEU TYR ALA PHE PHE ASN PHE LEU GLU LYS LYS GLN SEQRES 32 A 724 ILE LYS LEU SER LEU ARG ASN LYS ASN ILE LEU LEU ILE SEQRES 33 A 724 LEU ILE ALA PHE PHE SER ILE SER PRO ALA LEU MET HIS SEQRES 34 A 724 ILE TYR TYR TYR LYS SER SER THR VAL PHE THR SER TYR SEQRES 35 A 724 GLU ALA SER ILE LEU ASN ASP LEU LYS ASN LYS ALA GLN SEQRES 36 A 724 ARG GLU ASP TYR VAL VAL ALA TRP TRP ASP TYR GLY TYR SEQRES 37 A 724 PRO ILE ARG TYR TYR SER ASP VAL LYS THR LEU ILE ASP SEQRES 38 A 724 GLY GLY LYS HIS LEU GLY LYS ASP ASN PHE PHE SER SER SEQRES 39 A 724 PHE VAL LEU SER LYS GLU GLN ILE PRO ALA ALA ASN MET SEQRES 40 A 724 ALA ARG LEU SER VAL GLU TYR THR GLU LYS SER PHE LYS SEQRES 41 A 724 GLU ASN TYR PRO ASP VAL LEU LYS ALA MET VAL LYS ASP SEQRES 42 A 724 TYR GLN LYS THR SER ALA LYS ASP PHE LEU GLU SER LEU SEQRES 43 A 724 ASN ASP PRO ASN PHE LYS ILE ASP THR PRO LYS THR ARG SEQRES 44 A 724 ASP VAL TYR ILE TYR MET PRO TYR ARG MET LEU ARG ILE SEQRES 45 A 724 MET PRO VAL VAL ALA GLN PHE ALA ASN THR ASN PRO ASP SEQRES 46 A 724 ASN GLY GLU GLN GLU LYS SER LEU PHE PHE SER GLN ALA SEQRES 47 A 724 ASN PRO LEU ASP GLN ASP LYS LYS GLN GLY SER ILE THR SEQRES 48 A 724 LEU ASP ASN GLY VAL GLU ILE SER ASN ASP TYR ARG SER SEQRES 49 A 724 LEU LYS ILE GLU GLY ASN SER ILE PRO LEU LYS ALA PHE SEQRES 50 A 724 VAL ASP ILE GLU SER ILE THR ASN GLY LYS PHE TYR TYR SEQRES 51 A 724 ASN GLU ILE ASP SER LYS ALA GLN ILE TYR LEU LEU TYR SEQRES 52 A 724 LEU ARG GLU TYR LYS SER TYR VAL ILE LEU ASP GLU SER SEQRES 53 A 724 LEU TYR ASN SER SER TYR ILE GLN MET PHE LEU LEU ASN SEQRES 54 A 724 GLN TYR ASP GLN ASP LEU PHE GLU GLN ILE THR ASN ASP SEQRES 55 A 724 THR ARG ALA LYS ILE TYR ARG LEU LYS ARG GLU PHE HIS SEQRES 56 A 724 HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 8 GLY ASP GLN DAB ALA THR PPN GLY HET DAB B 13 7 HET PPN B 16 14 HET MN A 801 1 HET MN A 802 1 HET NA A 803 1 HET MES A 804 12 HET PEG A 805 7 HET FFK A 806 43 HETNAM DAB 2,4-DIAMINOBUTYRIC ACID HETNAM PPN PARA-NITROPHENYLALANINE HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM FFK [(2~{R},3~{R},4~{R},5~{S},6~{R})-3-ACETAMIDO-6- HETNAM 2 FFK (HYDROXYMETHYL)-4,5-BIS(OXIDANYL)OXAN-2-YL] [OXIDANYL- HETNAM 3 FFK [(2~{Z},6~{Z},10~{Z})-3,7,11,15-TETRAMETHYLHEXADECA-2, HETNAM 4 FFK 6,10,14-TETRAENOXY]PHOSPHORYL] HYDROGEN PHOSPHATE FORMUL 2 DAB C4 H10 N2 O2 FORMUL 2 PPN C9 H10 N2 O4 FORMUL 3 MN 2(MN 2+) FORMUL 5 NA NA 1+ FORMUL 6 MES C6 H13 N O4 S FORMUL 7 PEG C4 H10 O3 FORMUL 8 FFK C28 H49 N O12 P2 HELIX 1 AA1 SER A 12 ARG A 31 1 20 HELIX 2 AA2 LEU A 32 SER A 39 1 8 HELIX 3 AA3 GLU A 40 GLU A 43 5 4 HELIX 4 AA4 ASN A 55 GLY A 70 1 16 HELIX 5 AA5 SER A 82 LEU A 95 1 14 HELIX 6 AA6 SER A 98 ALA A 111 1 14 HELIX 7 AA7 ILE A 114 TYR A 125 1 12 HELIX 8 AA8 LEU A 127 ALA A 141 1 15 HELIX 9 AA9 ALA A 141 ARG A 147 1 7 HELIX 10 AB1 ASP A 154 VAL A 159 5 6 HELIX 11 AB2 LEU A 160 LYS A 177 1 18 HELIX 12 AB3 PHE A 180 TYR A 196 1 17 HELIX 13 AB4 SER A 199 HIS A 218 1 20 HELIX 14 AB5 GLU A 221 SER A 236 1 16 HELIX 15 AB6 ALA A 239 LYS A 257 1 19 HELIX 16 AB7 ASN A 262 SER A 280 1 19 HELIX 17 AB8 LEU A 283 VAL A 294 1 12 HELIX 18 AB9 ASN A 312 ASN A 321 5 10 HELIX 19 AC1 ASP A 324 SER A 334 1 11 HELIX 20 AC2 SER A 335 LYS A 351 1 17 HELIX 21 AC3 HIS A 353 LEU A 358 5 6 HELIX 22 AC4 ALA A 359 MET A 368 1 10 HELIX 23 AC5 MET A 368 GLY A 373 1 6 HELIX 24 AC6 LEU A 374 TYR A 379 5 6 HELIX 25 AC7 ALA A 380 LYS A 402 1 23 HELIX 26 AC8 SER A 407 TYR A 433 1 27 HELIX 27 AC9 THR A 440 ALA A 454 1 15 HELIX 28 AD1 TRP A 463 ASP A 465 5 3 HELIX 29 AD2 TYR A 466 ASP A 475 1 10 HELIX 30 AD3 LEU A 486 LYS A 499 1 14 HELIX 31 AD4 GLU A 500 ASN A 522 1 23 HELIX 32 AD5 ASP A 525 LYS A 532 1 8 HELIX 33 AD6 SER A 538 LEU A 546 1 9 HELIX 34 AD7 ARG A 568 ARG A 571 5 4 HELIX 35 AD8 ILE A 572 ASN A 581 1 10 HELIX 36 AD9 ASP A 674 ASN A 679 1 6 HELIX 37 AE1 SER A 680 PHE A 686 1 7 SHEET 1 AA1 2 PHE A 45 PHE A 46 0 SHEET 2 AA1 2 GLN A 49 LEU A 50 -1 O GLN A 49 N PHE A 46 SHEET 1 AA2 5 LYS A 477 THR A 478 0 SHEET 2 AA2 5 TYR A 459 VAL A 461 1 N VAL A 460 O LYS A 477 SHEET 3 AA2 5 VAL A 561 PRO A 566 1 O TYR A 562 N VAL A 461 SHEET 4 AA2 5 ALA A 705 LEU A 710 -1 O LYS A 706 N MET A 565 SHEET 5 AA2 5 PHE A 696 ASP A 702 -1 N ILE A 699 O ILE A 707 SHEET 1 AA3 6 PHE A 595 ALA A 598 0 SHEET 2 AA3 6 SER A 669 LEU A 673 -1 O TYR A 670 N ALA A 598 SHEET 3 AA3 6 ILE A 659 LEU A 664 -1 N LEU A 664 O SER A 669 SHEET 4 AA3 6 ASN A 630 SER A 642 1 N VAL A 638 O LEU A 661 SHEET 5 AA3 6 SER A 624 ILE A 627 -1 N LEU A 625 O ILE A 632 SHEET 6 AA3 6 GLU A 617 ILE A 618 -1 N GLU A 617 O LYS A 626 SHEET 1 AA4 5 PHE A 595 ALA A 598 0 SHEET 2 AA4 5 SER A 669 LEU A 673 -1 O TYR A 670 N ALA A 598 SHEET 3 AA4 5 ILE A 659 LEU A 664 -1 N LEU A 664 O SER A 669 SHEET 4 AA4 5 ASN A 630 SER A 642 1 N VAL A 638 O LEU A 661 SHEET 5 AA4 5 LYS A 647 GLU A 652 -1 O TYR A 649 N ASP A 639 LINK OE1 GLN A 73 MN MN A 802 1555 1555 2.43 LINK OD2 ASP A 76 MN MN A 802 1555 1555 2.19 LINK OD1 ASP A 154 MN MN A 801 1555 1555 2.12 LINK OD1 ASP A 475 MN MN A 802 1555 1555 2.59 LINK C GLN B 12 N DAB B 13 1555 1555 1.33 LINK C DAB B 13 N ALA B 14 1555 1555 1.33 LINK C THR B 15 N PPN B 16 1555 1555 1.33 LINK C PPN B 16 N GLY B 17 1555 1555 1.33 SITE 1 AC1 3 ASP A 56 ASP A 154 GLU A 319 SITE 1 AC2 3 GLN A 73 ASP A 76 ASP A 475 SITE 1 AC3 1 GLU A 43 SITE 1 AC4 4 MET A 190 MET A 237 ALA A 239 TRP A 240 SITE 1 AC5 1 TYR A 89 SITE 1 AC6 17 ASP A 56 ALA A 59 TYR A 79 TYR A 196 SITE 2 AC6 17 SER A 198 SER A 201 VAL A 286 GLN A 289 SITE 3 AC6 17 TYR A 293 ALA A 364 MET A 368 ARG A 375 SITE 4 AC6 17 PHE A 376 TYR A 379 TYR A 468 GLY A 483 SITE 5 AC6 17 DAB B 13 SITE 1 AC7 6 GLU A 315 THR A 316 ILE A 317 MET A 318 SITE 2 AC7 6 ASN A 321 THR B 15 CRYST1 83.810 116.540 173.890 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011932 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005751 0.00000