HEADER TRANSFERASE 02-JUL-18 6GYX TITLE CRYSTAL STRUCTURE OF DACA FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH TITLE 2 APCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIADENYLATE CYCLASE; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: DAC,CYCLIC-DI-AMP SYNTHASE,C-DI-AMP SYNTHASE; COMPND 5 EC: 2.7.7.85; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: DACA, C7J94_12115; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS C-DI-AMP, DIADENYLATE CYCLASE, APCPP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TOSI,P.S.FREEMONT,A.GRUNDLING REVDAT 3 17-JAN-24 6GYX 1 REMARK REVDAT 2 30-JAN-19 6GYX 1 JRNL REVDAT 1 23-JAN-19 6GYX 0 JRNL AUTH T.TOSI,F.HOSHIGA,C.MILLERSHIP,R.SINGH,C.ELDRID,D.PATIN, JRNL AUTH 2 D.MENGIN-LECREULX,K.THALASSINOS,P.FREEMONT,A.GRUNDLING JRNL TITL INHIBITION OF THE STAPHYLOCOCCUS AUREUS C-DI-AMP CYCLASE JRNL TITL 2 DACA BY DIRECT INTERACTION WITH THE PHOSPHOGLUCOSAMINE JRNL TITL 3 MUTASE GLMM. JRNL REF PLOS PATHOG. V. 15 07537 2019 JRNL REFN ESSN 1553-7374 JRNL PMID 30668586 JRNL DOI 10.1371/JOURNAL.PPAT.1007537 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 10899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 111 THROUGH 215 OR REMARK 3 RESID 217 THROUGH 260)) REMARK 3 SELECTION : (CHAIN B AND (RESID 111 THROUGH 204 OR REMARK 3 RESID 206 THROUGH 215 OR RESID 217 REMARK 3 THROUGH 260)) REMARK 3 ATOM PAIRS NUMBER : 1591 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10930 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 61.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 2.11500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GYW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM MGCL2, 50 MM MES PH 5.8, 0.2M REMARK 280 KCL, 3% PEG8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.04600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.09750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.21200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.09750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.04600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.21200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 95 REMARK 465 SER B 96 REMARK 465 HIS B 97 REMARK 465 MET B 98 REMARK 465 ALA B 99 REMARK 465 SER B 100 REMARK 465 PHE B 101 REMARK 465 LEU B 102 REMARK 465 LYS B 103 REMARK 465 ARG B 104 REMARK 465 TYR B 105 REMARK 465 THR B 106 REMARK 465 SER B 107 REMARK 465 ASN B 108 REMARK 465 THR B 261 REMARK 465 ARG B 262 REMARK 465 PHE B 263 REMARK 465 GLN B 264 REMARK 465 LYS B 265 REMARK 465 LYS B 266 REMARK 465 GLY B 267 REMARK 465 VAL B 268 REMARK 465 LYS B 269 REMARK 465 GLY A 95 REMARK 465 SER A 96 REMARK 465 HIS A 97 REMARK 465 MET A 98 REMARK 465 ALA A 99 REMARK 465 SER A 100 REMARK 465 PHE A 101 REMARK 465 LEU A 102 REMARK 465 LYS A 103 REMARK 465 ARG A 104 REMARK 465 TYR A 105 REMARK 465 THR A 106 REMARK 465 SER A 107 REMARK 465 ASN A 108 REMARK 465 THR A 109 REMARK 465 TYR A 110 REMARK 465 LEU A 205 REMARK 465 THR A 261 REMARK 465 ARG A 262 REMARK 465 PHE A 263 REMARK 465 GLN A 264 REMARK 465 LYS A 265 REMARK 465 LYS A 266 REMARK 465 GLY A 267 REMARK 465 VAL A 268 REMARK 465 LYS A 269 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 112 CB CG CD CE NZ REMARK 480 ASP B 113 CB CG OD1 OD2 REMARK 480 GLU B 115 CG CD OE1 OE2 REMARK 480 LYS B 116 CG CD CE NZ REMARK 480 LYS B 123 CE NZ REMARK 480 LYS B 130 CG CD CE NZ REMARK 480 LYS B 141 CB CG CD CE NZ REMARK 480 GLU B 142 CB CG CD OE1 OE2 REMARK 480 GLN B 146 CB CG CD OE1 NE2 REMARK 480 GLU B 150 CB CG CD OE1 OE2 REMARK 480 ASN B 171 CB CG OD1 ND2 REMARK 480 ASP B 197 CB CG OD1 OD2 REMARK 480 LYS B 200 CB CG CD CE NZ REMARK 480 SER B 202 CB OG REMARK 480 LYS B 203 CB CG CD CE NZ REMARK 480 SER B 204 CB OG REMARK 480 LEU B 205 CB CG CD1 CD2 REMARK 480 ARG B 210 CD NE CZ NH1 NH2 REMARK 480 ASP B 232 CB CG OD1 OD2 REMARK 480 LYS B 240 CD CE NZ REMARK 480 LEU B 241 CG CD1 CD2 REMARK 480 ARG B 243 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU B 248 CB CG CD OE1 OE2 REMARK 480 GLU B 252 CB CG CD OE1 OE2 REMARK 480 GLU B 256 CG CD OE1 OE2 REMARK 480 SER A 111 CB OG REMARK 480 LYS A 112 CB CG CD CE NZ REMARK 480 GLU A 114 CB CG CD OE1 OE2 REMARK 480 GLU A 115 CG CD OE1 OE2 REMARK 480 LYS A 116 CG CD CE NZ REMARK 480 LEU A 117 CB CG CD1 CD2 REMARK 480 LYS A 123 CD CE NZ REMARK 480 LYS A 130 CD CE NZ REMARK 480 ARG A 131 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG A 132 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 141 CB CG CD CE NZ REMARK 480 GLU A 142 CB CG CD OE1 OE2 REMARK 480 GLU A 150 CB CG CD OE1 OE2 REMARK 480 ASP A 156 CB CG OD1 OD2 REMARK 480 ASN A 171 CB CG OD1 ND2 REMARK 480 LYS A 200 CB CG CD CE NZ REMARK 480 ILE A 201 CB CG1 CG2 CD1 REMARK 480 SER A 202 CB OG REMARK 480 LYS A 203 CB CG CD CE NZ REMARK 480 SER A 204 CB OG REMARK 480 ARG A 210 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU A 228 CB CG CD OE1 OE2 REMARK 480 GLU A 229 CB CG CD OE1 OE2 REMARK 480 LYS A 240 CB CG CD CE NZ REMARK 480 GLU A 256 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY B 177 HO2' APC B 301 1.34 REMARK 500 H3A1 APC B 301 MN MN B 302 1.37 REMARK 500 OG SER B 216 H GLY B 239 1.50 REMARK 500 O SER A 157 H ILE A 186 1.55 REMARK 500 O ILE B 118 H SER B 122 1.57 REMARK 500 OG1 THR B 207 O1A APC B 301 1.82 REMARK 500 OG SER A 196 OE1 GLU A 217 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ1 LYS B 200 OD2 ASP B 244 4445 1.29 REMARK 500 HZ1 LYS B 200 CG ASP B 244 4445 1.52 REMARK 500 NZ LYS B 200 OD2 ASP B 244 4445 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 141 -105.12 -94.59 REMARK 500 MET B 155 -54.95 -133.63 REMARK 500 LYS A 141 -103.30 -97.67 REMARK 500 MET A 155 -51.40 -130.45 REMARK 500 PHE A 259 -94.72 -116.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC A 301 DBREF1 6GYX B 99 269 UNP A0A2P7CAT2_STAAU DBREF2 6GYX B A0A2P7CAT2 99 269 DBREF1 6GYX A 99 269 UNP A0A2P7CAT2_STAAU DBREF2 6GYX A A0A2P7CAT2 99 269 SEQADV 6GYX GLY B 95 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYX SER B 96 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYX HIS B 97 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYX MET B 98 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYX ALA B 99 UNP A0A2P7CAT GLY 99 EXPRESSION TAG SEQADV 6GYX GLY A 95 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYX SER A 96 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYX HIS A 97 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYX MET A 98 UNP A0A2P7CAT EXPRESSION TAG SEQADV 6GYX ALA A 99 UNP A0A2P7CAT GLY 99 EXPRESSION TAG SEQRES 1 B 175 GLY SER HIS MET ALA SER PHE LEU LYS ARG TYR THR SER SEQRES 2 B 175 ASN THR TYR SER LYS ASP GLU GLU LYS LEU ILE GLN SER SEQRES 3 B 175 VAL SER LYS ALA VAL GLN TYR MET ALA LYS ARG ARG ILE SEQRES 4 B 175 GLY ALA LEU ILE VAL PHE GLU LYS GLU THR GLY LEU GLN SEQRES 5 B 175 ASP TYR ILE GLU THR GLY ILE ALA MET ASP SER ASN ILE SEQRES 6 B 175 SER GLN GLU LEU LEU ILE ASN VAL PHE ILE PRO ASN THR SEQRES 7 B 175 PRO LEU HIS ASP GLY ALA MET ILE ILE GLN GLY THR LYS SEQRES 8 B 175 ILE ALA ALA ALA ALA SER TYR LEU PRO LEU SER ASP SER SEQRES 9 B 175 PRO LYS ILE SER LYS SER LEU GLY THR ARG HIS ARG ALA SEQRES 10 B 175 ALA VAL GLY ILE SER GLU VAL SER ASP ALA PHE THR VAL SEQRES 11 B 175 ILE VAL SER GLU GLU THR GLY ASP ILE SER VAL THR PHE SEQRES 12 B 175 ASP GLY LYS LEU ARG ARG ASP ILE SER ASN GLU ILE PHE SEQRES 13 B 175 GLU GLU LEU LEU ALA GLU HIS TRP PHE GLY THR ARG PHE SEQRES 14 B 175 GLN LYS LYS GLY VAL LYS SEQRES 1 A 175 GLY SER HIS MET ALA SER PHE LEU LYS ARG TYR THR SER SEQRES 2 A 175 ASN THR TYR SER LYS ASP GLU GLU LYS LEU ILE GLN SER SEQRES 3 A 175 VAL SER LYS ALA VAL GLN TYR MET ALA LYS ARG ARG ILE SEQRES 4 A 175 GLY ALA LEU ILE VAL PHE GLU LYS GLU THR GLY LEU GLN SEQRES 5 A 175 ASP TYR ILE GLU THR GLY ILE ALA MET ASP SER ASN ILE SEQRES 6 A 175 SER GLN GLU LEU LEU ILE ASN VAL PHE ILE PRO ASN THR SEQRES 7 A 175 PRO LEU HIS ASP GLY ALA MET ILE ILE GLN GLY THR LYS SEQRES 8 A 175 ILE ALA ALA ALA ALA SER TYR LEU PRO LEU SER ASP SER SEQRES 9 A 175 PRO LYS ILE SER LYS SER LEU GLY THR ARG HIS ARG ALA SEQRES 10 A 175 ALA VAL GLY ILE SER GLU VAL SER ASP ALA PHE THR VAL SEQRES 11 A 175 ILE VAL SER GLU GLU THR GLY ASP ILE SER VAL THR PHE SEQRES 12 A 175 ASP GLY LYS LEU ARG ARG ASP ILE SER ASN GLU ILE PHE SEQRES 13 A 175 GLU GLU LEU LEU ALA GLU HIS TRP PHE GLY THR ARG PHE SEQRES 14 A 175 GLN LYS LYS GLY VAL LYS HET APC B 301 45 HET MN B 302 1 HET APC A 301 45 HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM MN MANGANESE (II) ION HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 3 APC 2(C11 H18 N5 O12 P3) FORMUL 4 MN MN 2+ HELIX 1 AA1 SER B 111 ARG B 132 1 22 HELIX 2 AA2 LEU B 145 GLU B 150 1 6 HELIX 3 AA3 SER B 160 ILE B 169 1 10 HELIX 4 AA4 GLY B 206 SER B 219 1 14 HELIX 5 AA5 SER B 246 GLY B 260 1 15 HELIX 6 AA6 LYS A 112 ARG A 131 1 20 HELIX 7 AA7 LEU A 145 GLU A 150 1 6 HELIX 8 AA8 SER A 160 PHE A 168 1 9 HELIX 9 AA9 THR A 172 ASP A 176 5 5 HELIX 10 AB1 THR A 207 SER A 219 1 13 HELIX 11 AB2 SER A 246 PHE A 259 1 14 SHEET 1 AA1 7 ILE B 153 ASN B 158 0 SHEET 2 AA1 7 LYS B 185 SER B 191 -1 O ILE B 186 N SER B 157 SHEET 3 AA1 7 ALA B 178 GLN B 182 -1 N ALA B 178 O SER B 191 SHEET 4 AA1 7 ALA B 135 PHE B 139 1 N VAL B 138 O MET B 179 SHEET 5 AA1 7 PHE B 222 VAL B 226 -1 O PHE B 222 N PHE B 139 SHEET 6 AA1 7 ILE B 233 PHE B 237 -1 O SER B 234 N ILE B 225 SHEET 7 AA1 7 LYS B 240 ARG B 242 -1 O ARG B 242 N VAL B 235 SHEET 1 AA2 7 ILE A 153 ASN A 158 0 SHEET 2 AA2 7 LYS A 185 SER A 191 -1 O ILE A 186 N SER A 157 SHEET 3 AA2 7 ALA A 178 GLN A 182 -1 N ALA A 178 O SER A 191 SHEET 4 AA2 7 ALA A 135 PHE A 139 1 N VAL A 138 O MET A 179 SHEET 5 AA2 7 PHE A 222 VAL A 226 -1 O PHE A 222 N PHE A 139 SHEET 6 AA2 7 ILE A 233 PHE A 237 -1 O SER A 234 N ILE A 225 SHEET 7 AA2 7 LYS A 240 ARG A 242 -1 O ARG A 242 N VAL A 235 SITE 1 AC1 7 ASP B 176 GLY B 177 TYR B 192 LEU B 193 SITE 2 AC1 7 THR B 207 ARG B 208 MN B 302 SITE 1 AC2 1 APC B 301 SITE 1 AC3 9 HIS A 175 ASP A 176 GLY A 177 TYR A 192 SITE 2 AC3 9 LEU A 193 GLY A 206 THR A 207 ARG A 208 SITE 3 AC3 9 ALA A 211 CRYST1 44.092 80.424 96.195 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022680 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010396 0.00000