HEADER PROTEIN BINDING 04-JUL-18 6GZJ TITLE COMPLEX BETWEEN THE DYNEIN LIGHT CHAIN DYNLL1/DLC8 AND THE SPECIFIC TITLE 2 DOMAIN OF LARGE MYELIN-ASSOCIATED GLYCOPROTEIN L-MAG COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 1, CYTOPLASMIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 8 KDA DYNEIN LIGHT CHAIN,DLC8,DYNEIN LIGHT CHAIN LC8-TYPE 1, COMPND 5 PROTEIN INHIBITOR OF NEURONAL NITRIC OXIDE SYNTHASE,PIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MYELIN-ASSOCIATED GLYCOPROTEIN; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SIGLEC-4A; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DYNLL1, DLC1, DNCL1, DNCLC1, HDLC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJEXPRESS401; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090 KEYWDS COMPLEX, HETEROTETRAMER, CELL ADHESION, CYTOPLASMIC DOMAIN, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.MYLLYKOSKI,P.KURSULA REVDAT 3 17-JAN-24 6GZJ 1 REMARK REVDAT 2 09-JAN-19 6GZJ 1 JRNL REVDAT 1 10-OCT-18 6GZJ 0 JRNL AUTH M.MYLLYKOSKI,M.A.EICHEL,R.B.JUNG,S.KELM,H.B.WERNER,P.KURSULA JRNL TITL HIGH-AFFINITY HETEROTETRAMER FORMATION BETWEEN THE LARGE JRNL TITL 2 MYELIN-ASSOCIATED GLYCOPROTEIN AND THE DYNEIN LIGHT CHAIN JRNL TITL 3 DYNLL1. JRNL REF J. NEUROCHEM. V. 147 764 2018 JRNL REFN ESSN 1471-4159 JRNL PMID 30261098 JRNL DOI 10.1111/JNC.14598 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2152: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 3 NUMBER OF REFLECTIONS : 7511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.610 REMARK 3 FREE R VALUE TEST SET COUNT : 346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.4912 - 1.9774 0.66 2740 117 0.2449 0.2746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 817 REMARK 3 ANGLE : 1.135 1098 REMARK 3 CHIRALITY : 0.069 118 REMARK 3 PLANARITY : 0.006 138 REMARK 3 DIHEDRAL : 15.206 489 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9152 20.5423 -7.5058 REMARK 3 T TENSOR REMARK 3 T11: 0.8363 T22: 0.2656 REMARK 3 T33: 0.5406 T12: -0.2943 REMARK 3 T13: -0.2222 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 1.4363 L22: 2.6221 REMARK 3 L33: 1.4360 L12: 1.1947 REMARK 3 L13: 0.0024 L23: 0.5337 REMARK 3 S TENSOR REMARK 3 S11: 0.2118 S12: 0.0141 S13: -0.0973 REMARK 3 S21: 0.0592 S22: 0.2061 S23: -0.1245 REMARK 3 S31: -0.4642 S32: 0.2012 S33: 0.4924 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9156 16.3109 0.0164 REMARK 3 T TENSOR REMARK 3 T11: 1.0008 T22: 0.1317 REMARK 3 T33: 0.2905 T12: -0.0812 REMARK 3 T13: 0.0500 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.9969 L22: 4.4070 REMARK 3 L33: 0.5986 L12: -2.0316 REMARK 3 L13: 1.0764 L23: -1.2836 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: -0.2574 S13: 0.2866 REMARK 3 S21: 1.1588 S22: 0.1938 S23: -0.0801 REMARK 3 S31: -0.6520 S32: -0.0446 S33: 0.1947 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4935 10.7480 -5.9090 REMARK 3 T TENSOR REMARK 3 T11: 0.5488 T22: 0.2658 REMARK 3 T33: 0.2295 T12: 0.0586 REMARK 3 T13: 0.1520 T23: 0.0635 REMARK 3 L TENSOR REMARK 3 L11: 3.5002 L22: 0.2281 REMARK 3 L33: 2.5870 L12: 0.8731 REMARK 3 L13: 0.1523 L23: 0.1413 REMARK 3 S TENSOR REMARK 3 S11: 0.1305 S12: -0.4070 S13: 0.1195 REMARK 3 S21: 0.9329 S22: 0.1259 S23: 0.4716 REMARK 3 S31: -0.3356 S32: -0.7326 S33: -0.2141 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6244 16.8067 -13.1359 REMARK 3 T TENSOR REMARK 3 T11: 0.5095 T22: 0.1088 REMARK 3 T33: 0.2387 T12: -0.0375 REMARK 3 T13: 0.0440 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 3.0805 L22: 2.8132 REMARK 3 L33: 3.5524 L12: 0.5924 REMARK 3 L13: 0.0960 L23: -0.2248 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.1596 S13: 0.6655 REMARK 3 S21: 0.8296 S22: 0.3450 S23: -0.0025 REMARK 3 S31: -1.1429 S32: -0.1571 S33: -0.0643 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 606 THROUGH 615 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5923 20.3217 -19.4034 REMARK 3 T TENSOR REMARK 3 T11: 0.5790 T22: 0.4099 REMARK 3 T33: 0.5087 T12: -0.0580 REMARK 3 T13: 0.0376 T23: 0.1589 REMARK 3 L TENSOR REMARK 3 L11: 3.8829 L22: 8.0881 REMARK 3 L33: 8.8912 L12: -4.6589 REMARK 3 L13: -2.7545 L23: 2.1862 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: 0.5672 S13: 1.5362 REMARK 3 S21: 0.0875 S22: 0.0615 S23: -0.7314 REMARK 3 S31: -1.6960 S32: -0.2047 S33: -0.1208 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT WAS CARRIED OUT WITH A SET REMARK 3 OF DATA THAT HAS BEEN ANISOTROPICALLY TRUNCATED, DUE TO THE REMARK 3 STRONG ANISOTROPY OF THE CRYSTALS. HYDROGEN ATOMS WERE ADDED TO REMARK 3 THEIR RIDING POSITIONS. REMARK 4 REMARK 4 6GZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07175 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7535 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.977 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.8 REMARK 200 DATA REDUNDANCY : 17.60 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 9.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 0.2 M LITHIUM REMARK 280 SULFATE, AND 25% (W/V) PEG 3350, PH 5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.15333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.30667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.23000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 170.38333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.07667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.15333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 136.30667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 170.38333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 102.23000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.07667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER B 573 REMARK 465 GLU B 574 REMARK 465 LYS B 575 REMARK 465 ARG B 576 REMARK 465 LEU B 577 REMARK 465 GLY B 578 REMARK 465 SER B 579 REMARK 465 GLU B 580 REMARK 465 ARG B 581 REMARK 465 ARG B 582 REMARK 465 LEU B 583 REMARK 465 LEU B 584 REMARK 465 GLY B 585 REMARK 465 LEU B 586 REMARK 465 ARG B 587 REMARK 465 GLY B 588 REMARK 465 GLU B 589 REMARK 465 SER B 590 REMARK 465 PRO B 591 REMARK 465 GLU B 592 REMARK 465 LEU B 593 REMARK 465 ASP B 594 REMARK 465 LEU B 595 REMARK 465 SER B 596 REMARK 465 TYR B 597 REMARK 465 SER B 598 REMARK 465 HIS B 599 REMARK 465 SER B 600 REMARK 465 ASP B 601 REMARK 465 LEU B 602 REMARK 465 GLY B 603 REMARK 465 LYS B 604 REMARK 465 ARG B 605 REMARK 465 GLU B 616 REMARK 465 LEU B 617 REMARK 465 ALA B 618 REMARK 465 GLU B 619 REMARK 465 TYR B 620 REMARK 465 ALA B 621 REMARK 465 GLU B 622 REMARK 465 ILE B 623 REMARK 465 ARG B 624 REMARK 465 VAL B 625 REMARK 465 LYS B 626 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 144.37 74.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 101 DBREF 6GZJ A 1 89 UNP P63167 DYL1_HUMAN 1 89 DBREF 6GZJ B 573 626 UNP P20917 MAG_MOUSE 573 626 SEQADV 6GZJ SER A 0 UNP P63167 EXPRESSION TAG SEQRES 1 A 90 SER MET CYS ASP ARG LYS ALA VAL ILE LYS ASN ALA ASP SEQRES 2 A 90 MET SER GLU GLU MET GLN GLN ASP SER VAL GLU CYS ALA SEQRES 3 A 90 THR GLN ALA LEU GLU LYS TYR ASN ILE GLU LYS ASP ILE SEQRES 4 A 90 ALA ALA HIS ILE LYS LYS GLU PHE ASP LYS LYS TYR ASN SEQRES 5 A 90 PRO THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SER SEQRES 6 A 90 TYR VAL THR HIS GLU THR LYS HIS PHE ILE TYR PHE TYR SEQRES 7 A 90 LEU GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY SEQRES 1 B 54 SER GLU LYS ARG LEU GLY SER GLU ARG ARG LEU LEU GLY SEQRES 2 B 54 LEU ARG GLY GLU SER PRO GLU LEU ASP LEU SER TYR SER SEQRES 3 B 54 HIS SER ASP LEU GLY LYS ARG PRO THR LYS ASP SER TYR SEQRES 4 B 54 THR LEU THR GLU GLU LEU ALA GLU TYR ALA GLU ILE ARG SEQRES 5 B 54 VAL LYS HET CL A 101 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- FORMUL 4 HOH *15(H2 O) HELIX 1 AA1 SER A 14 TYR A 32 1 19 HELIX 2 AA2 ILE A 34 ASN A 51 1 18 SHEET 1 AA1 4 ALA A 6 MET A 13 0 SHEET 2 AA1 4 HIS A 72 LEU A 78 -1 O PHE A 73 N ASP A 12 SHEET 3 AA1 4 VAL A 81 LYS A 87 -1 O VAL A 81 N LEU A 78 SHEET 4 AA1 4 TRP A 54 GLY A 59 -1 N ILE A 57 O LEU A 84 SHEET 1 AA2 2 GLY A 63 GLU A 69 0 SHEET 2 AA2 2 THR B 607 LEU B 613 -1 O LYS B 608 N HIS A 68 CISPEP 1 PRO A 52 THR A 53 0 -0.25 SITE 1 AC1 1 GLU A 35 CRYST1 44.050 44.050 204.460 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022701 0.013107 0.000000 0.00000 SCALE2 0.000000 0.026213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004891 0.00000